BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476778
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76260.1 | Symbols: DWA2 | DWD (DDB1-binding WD40 protein) h... 2146 0.0
AT1G20540.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1166 0.0
> AT1G76260.1 | Symbols: DWA2 | DWD (DDB1-binding WD40 protein)
hypersensitive to ABA 2 | chr1:28610265-28613263 FORWARD LENGTH=1416
Length=1416
Score = 2146 bits (1162), Expect = 0.0
Identities = 1343/1428 (94%), Gaps = 22/1428 (2%)
Strand=Plus/Plus
Query 1 ATCTTCTCGAAACCCAGCAAAATCAGAGAGCGGCAAATCGTTGAAGAGAGATCTTCTTCT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTCACGAAACCCAGCAAAATCAGAGAGCGGCAAATCGTTGAAGAGAGATCTTCTTCT 60
Query 61 TCCTGAATCCGTAACGTTGGCTGAGGCGTGAGAACACAATGCAAGGTGGATCATCGGGTA 120
|||||||||||||||||| ||| |||||| ||| || ||||||||| |||||||||||||
Sbjct 61 TCCTGAATCCGTAACGTTAGCTCAGGCGTAAGAGCATAATGCAAGGAGGATCATCGGGTA 120
Query 121 TTGGATATGGTTTGAAGTATCAGGCCAGATGTATATCGGATGTGAAAGCAGATAGAGATC 180
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TTGGTTATGGTTTGAAGTATCAGGCCAGATGTATATCGGATGTTAAAGCAGATAGAGATC 180
Query 181 ACACCAGCTTCCTCACTGGAACCCTAAGCCTGAAAGAAGAAAACGAGGTTCATTTGCTTC 240
|||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 181 ACACTAGCTTCCTCACTGGAACCCTAAGCTTGAAAGAAGAAAATGAGGTTCATTTGCTTC 240
Query 241 GTTTGTCATCTGGTGGATCTGAGCTGTTATGTGAGGGTTTGTTCTCGCATCCTAATGAAA 300
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 GTTTGTCTTCTGGTGGATCTGAGCTGTTATGTGAGGGATTGTTCTCGCATCCTAATGAAA 300
Query 301 TTTGGGACCTTGCTTCTTGCCCTTTTGATCAACGCATTTTCTCTACTGTCTTCTCCACTG 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTGGGACCTTGCTTCTTCCCCTTTTGATCAACGCATTTTCTCTACTGTCTTCTCCACTG 360
Query 361 GCGAGTCATTTGGAGCAGCAATATGGCAGATTCCTGAGCCATATGGTCAATCGAATTCTT 420
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCGACTCATATGGAGCAGCAATATGGCAGATTCCTGAGCCATATGGTCAATCGAATTCTT 420
Query 421 CAACATTGGAATGTGTTGCTTCCCTTGATGCACATGTTGGTAAGATTAATTGCGTTCTTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAACATTGGAATGTGTTGCTTCCCTTGATGCACATGTTGGTAAGATTAATTGCGTTCTTT 480
Query 481 GGTGTCCCTCTGGAAATTCTGACAAGTTAATCAGCATGGACGAACAAAACCTTGTCTTGT 540
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 481 GGTGTCCCTCTGGAAATTCTGACAAGTTAATCAGCATGGATGAACAAAATCTTGTCTTCT 540
Query 541 GGAGTTTAGACTCTTCAAAGAAAAGTGCTGAGGTTTTATCTAAGGAGTCGGCTGGTATGC 600
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 541 GGAGTTTAGACTCTTCAAAGAAAAGTGCGGAGGTTTTATCTAAGGAGTCAGCTGGTATGC 600
Query 601 GCCATTCTTTATCTGGTGGAGCATGGAATCCACATGATGTGAATTCTGTTGCAGCAACTT 660
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTCATTCTTTATCTGGTGGAGCATGGAATCCACATGATGTGAATTCTGTTGCAGCAACTT 660
Query 661 CTGAATCATCTATCCAGTTTTGGGATTTACGTACTATGAAGAAGGCTAATTCAATTGAAC 720
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 661 CTGAATCATCTATCCAGTTTTGGGACTTACGTACTATGAAGAAGAATAATTCAATTGAAC 720
Query 721 GTGCCCATGTACGTAATGTTGACTACAATCTCAAGAGAGAACATATACTCGTTTCTGCAG 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 GTGCCCATGTACGTAATGTTGACTACAATCTCAAGAGAGAACATATACTCGTTTCTGCGG 780
Query 781 ATGATGAATCTGGTATACATCTCTGGGATCTTCGGAAGACCAATGTT-CCTGTGCAAGAG 839
|||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 781 ATGATGAATCTGGTATACATCTCTGGGATCTTCGGAAGACAAA-GTTTCCTGTGCAAGAG 839
Query 840 CTCCCTGGTCATACACATTGGACATGGGCTGTCAGGTGTAACCCTGAGTATGAAGAGCTA 899
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CTCCCTGGTCATACACACTGGACATGGGCTGTCAGGTGTAACCCTGAGTATGAAGAGCTA 899
Query 900 ATTCTGAGCGTTGGAACAGACTCAGCTGTCAACTTGTGGTTTGCATCAGCATCTAGTGAA 959
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 ATTCTGAGCGTTGGAACAGACTCAGCTGTCAACTTGTGGTTTGCTTCAGCATCTAGTGAG 959
Query 960 AATAAAACCGCAGGAAGCCCGGTGGAAGCATCACGTCAGCGTGTGAACCCATTGCTAAAT 1019
||||||| ||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 960 CATAAAACATCAGAAAGCCCGGTGGAAGCATCACGTCAGCGTGTGAACCCGTTACTAAAC 1019
Query 1020 TCTTATACTGACTACGAAGACAGTGTCTACGGCCTTGCTTGGAGCTCGCGTGAGCCTTGG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TCTTATACTGACTACGAAGACAGTGTCTACGGCCTTGCTTGGAGCTCGCGTGAGCCTTGG 1079
Query 1080 ATTTTTGCATCATTGTCATATGACGGGAGGGTTGTGATTGAATCCGTCAAGCCTTTCCTA 1139
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1080 ATTTTTGCATCATTGTCATATGACGGTAGGGTTGTGATCGAATCCGTCAAGCCTTTCCTG 1139
Query 1140 CCAAGAAGATAGGTTCATGCGCCCAATCGAAGAAGTCTTCAAAGGAAAAGCTGCATTGTC 1199
|||||||||||||| | || | | ||||||| |||||||| |||||||||||| |
Sbjct 1140 CCAAGAAGATAGGTCC---CG---A-TGGAAGAAGGCTTCAAAGAAAAAGCTGCATT--C 1190
Query 1200 ATATGCTCTCATTTTACACAAATTTTGAACGTTTTGATAATAATCACAACACCAAAACTA 1259
||||||| |||||| | |||||||||||| ||||| ||||||||||||||| ||||||||
Sbjct 1191 ATATGCTATCATTTAAGACAAATTTTGAATGTTTTTATAATAATCACAACATCAAAACTA 1250
Query 1260 TTCTTCTACAATTGTTGAACTTTTGCTCGTGTCTTTGTTTATCACACTATCTTTCTCAGC 1319
|||||||||| || || ||||||| |||||||||||||| ||| | ||||| ||||||
Sbjct 1251 TTCTTCTACAGTTCTTCAACTTTTACTCGTGTCTTTGTTCATCTC--TATCT--CTCAGC 1306
Query 1320 ACAAGTCACAAAGATGTAAAAACAAACCTCGTGAAAATACTC----ACAAAGTCAATGAA 1375
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1307 ACAAGGCACAAAGATGTAAAACCAAACCTCGTGAAAATACTTTGGTACAAAGTCAATGAA 1366
Query 1376 CCTGCT---ATAATTCAGTTTATAATAAAGAAAATATCCGGATCAAGT 1420
|||||| |||||||||||||| |||||||||||| ||||||||||
Sbjct 1367 CCTGCTGCTATAATTCAGTTTATTGTAAAGAAAATATTCGGATCAAGT 1414
> AT1G20540.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:7112611-7115362 FORWARD LENGTH=1268
Length=1268
Score = 1166 bits (631), Expect = 0.0
Identities = 928/1070 (87%), Gaps = 25/1070 (2%)
Strand=Plus/Plus
Query 96 ACAATGCAAGGTGGATCATCGGGTATTGGATATGGTTTGAAGTATCAGGCCAGATGTATA 155
||||||||||| |||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 39 ACAATGCAAGGAGGATCATCGGGTATTGGATACGGTTTGAAGTATCAGTCTAGATGTATA 98
Query 156 TCGGATGTGAAAGCAGATA-GAGATCACACCAGCTTCCTCACTGGAACCCTAAGCCTGAA 214
|||||||||||||| |||| | ||| |||| ||||| ||||||||||| || || | ||
Sbjct 99 TCGGATGTGAAAGCCGATACG-GATTACACAAGCTTTCTCACTGGAACTCTTAGTTTAAA 157
Query 215 AGAAGAAAACGAGGTTCAT-TTGCTTCGTTTGTCATCTGGTGGATCTGAGCTGT-TATGT 272
||||||||| ||||||||| || ||||||||||||||||||||||||||||| | |||||
Sbjct 158 AGAAGAAAATGAGGTTCATCTT-CTTCGTTTGTCATCTGGTGGATCTGAGCT-TATATGT 215
Query 273 GAGGGTTTGTTCTCGCATCCTAATGAAATTTGGGACCTTGCTTCTTGCCCTTTTGATCAA 332
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 216 GAGGGTTTGTTCTCTCATCCTAATGAGATTTGGGACCTTGCTTCTTGCCCTTTTGATCAA 275
Query 333 CGCATTTTCTCTACTGTCTTCTCCACTGGCGAGTCATTTGGAGCAGCAATATGGCAGATT 392
||||||||||| || |||||||||||||| || || ||||||||||| |||||||| |||
Sbjct 276 CGCATTTTCTCCACCGTCTTCTCCACTGGTGAATCGTTTGGAGCAGCGATATGGCAAATT 335
Query 393 CCTGAGCCATATGGTCAA-TCGAATTCTTCAACA-TTGGAATGTGTTGCTTCCCTTGATG 450
|||||| |||||||||| | ||||||| || || ||||| |||||||||| |||||||
Sbjct 336 CCTGAGTTATATGGTCAACT-GAATTCTCCA-CAATTGGAGCGTGTTGCTTCTCTTGATG 393
Query 451 CACATGTTGGTAAGATTAATTGCGTTCTTTGGTGTCCCTCTGGAA-ATTCTGACAAGTTA 509
| |||||||||||||||||||| ||||||||||| || ||||||| || ||||||||||
Sbjct 394 CTCATGTTGGTAAGATTAATTGTGTTCTTTGGTGGCCTTCTGGAAGATG-TGACAAGTTA 452
Query 510 ATCAGCATGGACGAACAAAACCTTGTCTTGTGGAGTTTAGACTCTTCAAAGAAAAGT--G 567
|||||||| || |||||||| || |||||||||| ||||||| ||| || ||| || |
Sbjct 453 ATCAGCATTGATGAACAAAATATTTTCTTGTGGAGCTTAGACTGTTCGAA-AAA-GTCTG 510
Query 568 CTGAGGTTTTATCTAAGGAGTCGGCTGGTATGC-GCCATTCTTTATCTGGTGGAGCATGG 626
|||||||| |||||||||| || ||||| ||| || |||||||||||||||||||||||
Sbjct 511 CTGAGGTTCTATCTAAGGATTCAGCTGGGATGTTGC-ATTCTTTATCTGGTGGAGCATGG 569
Query 627 AATCCACATGATGTGAATTCTGTTGCAGCAACTTCTGAATCATCTATCCAGTTTTGGGAT 686
||||||||||||| ||| ||||||||||||| |||||||||| | ||||| |||||
Sbjct 570 GATCCACATGATGTAAATGCTGTTGCAGCAACGGGTGAATCATCTGTTCAGTTCTGGGAC 629
Query 687 TTACGTACTATGAAGAAGGCTAATTCAATTGAACGTGCCCATGTACGTAATGTTGACTAC 746
|| |||||||||||||||| ||| |||||||||| ||| |||||||| |||||| |||
Sbjct 630 TTGCGTACTATGAAGAAGGTTAACTCAATTGAACATGCTCATGTACGCGGTGTTGATTAC 689
Query 747 AATCTCAAGAGAGAACATATACTCGTTTCTGCAGATGATGAATCTGGTATACATCTCTGG 806
|||| |||||||||||||||||| || ||||||| ||||||||||| |||||| |||||
Sbjct 690 AATCCCAAGAGAGAACATATACTTGTAACTGCAGAGGATGAATCTGGCATACATGTCTGG 749
Query 807 GATCTTCGGAAGACCAATGTTCCTGTGCAAGAGCTCCCTGGTCATACACATTGGACATGG 866
||||| |||||| |||| |||||||| |||||||| |||||||||||||||||||| |||
Sbjct 750 GATCTCCGGAAGGCCAAGGTTCCTGTCCAAGAGCTTCCTGGTCATACACATTGGACTTGG 809
Query 867 GCTGTCAGGTGTAACCCTGAGTATGAAG-AGCTAATTCTGAGCGTTGGAACAGACTCAGC 925
|||||||||||||||||||||||||| | | || |||||||||| ||||||||| || |
Sbjct 810 GCTGTCAGGTGTAACCCTGAGTATGATGGA-CTGATTCTGAGCGCTGGAACAGATTCGGT 868
Query 926 TGTCAACTTGTGGTTTGCATCAGCATC-T--AGTGAAAATAAAACCGCAGGAAGCCCGGT 982
||||||| |||||| ||| |||||| | | ||||| | |||||| ||| ||| || ||
Sbjct 869 TGTCAACCTGTGGTATGCTTCAGCAACATCCAGTGATGACAAAACCTCAGAAAGTCCTGT 928
Query 983 GGAAGC-ATCACGTCAGCGTGTGAACCCATTGCTAAATTCTTATACTGACTACGAAGACA 1041
|||| | | |||| |||||||||||||| ||||| || || || |||||||| |||||||
Sbjct 929 GGAATCCA-CACGACAGCGTGTGAACCCGTTGCTCAACTCATACACTGACTATGAAGACA 987
Query 1042 GTGTCTACGGCCTTGCTTGGAGCTCGCGTGAGCCTTGGATTTTTGCATCATTGTCATATG 1101
||||||| |||||||||||||| || |||||||||||| ||||||||||||| |||||||
Sbjct 988 GTGTCTATGGCCTTGCTTGGAGTTCACGTGAGCCTTGGGTTTTTGCATCATTATCATATG 1047
Query 1102 ACGGGAGGGTTGTGATTGAATCCGTCAAGCCTTTCCTACCAAGAAGATAG 1151
|||| || || | || |||||||||||||||||||| ||||||| ||||
Sbjct 1048 ACGGAAGAGTCATCATCGAATCCGTCAAGCCTTTCCTTCCAAGAATATAG 1097
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69979559730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5