BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476787
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76340.1 | Symbols: GONST3 | golgi nucleotide sugar transpor... 2098 0.0
> AT1G76340.1 | Symbols: GONST3 | golgi nucleotide sugar transporter
3 | chr1:28634955-28636716 REVERSE LENGTH=1575
Length=1575
Score = 2098 bits (1136), Expect = 0.0
Identities = 1299/1379 (94%), Gaps = 6/1379 (0%)
Strand=Plus/Plus
Query 1 CTTTCTTCTCTGGTTTCATTTGATATGTCGACGAACGATGAGGAAAATGGAACTTTAATC 60
||||| ||| || |||||||||| ||||||||||| |||||||||||||||||| |||||
Sbjct 200 CTTTCGTCTGTGCTTTCATTTGAAATGTCGACGAATGATGAGGAAAATGGAACTGTAATC 259
Query 61 GAGGTTAAGAATGTTCCAGAACCAAGCCCAGAGACTTGGTATAGTGTTTTTCTTCGTCAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GAGGTTAAGAATGTTCCAGAACCAAGCCCAGAGACTTGGTATAGTGTTTTTCTTCGTCAA 319
Query 121 GCTTCGGTCTATGGTGTAGCTGCAGGGTACTGTCTCTCAGCTTCTCTGCTCTCAATCATC 180
||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 320 GCTTCTGTCTATGGTGTAGCTGCTGGTTACTGTCTCTCAGCTTCTCTTCTCTCAATCATC 379
Query 181 AACAAATGGGCAATCATGAAGTTTCCTTACCCCGGTGCACTAACCGCGATGCAGTACTTT 240
||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 380 AACAAATGGGCAATCATGAAGTTTCCTTACCCCGGCGCATTGACCGCGATGCAGTACTTT 439
Query 241 ACAAGCGCAGCTGGTGTTTTGCTCTGTGCTCAGATGCAGCTAATCGAGCATGATTCGCTT 300
||||| ||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||
Sbjct 440 ACAAGTGCAGCTGGTGTCTTGCTTTGTGCTCAGATGAAGCTAATTGAGCATGATTCGCTT 499
Query 301 AATCTCTTGACAATGTGGCGGTTTCTTCCCGCAGCTATGATATTCTACTTGTCTTTGTTC 360
||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 500 AATCTATTGACCATGTGGCGGTTTCTTCCCGCAGCTATGATATTCTACTTGTCTCTGTTT 559
Query 361 ACTAACAGTGAGCTTCTCCTCCACGCCAATGTCGATACTTTCATCGTGTTTAGGTCTGCT 420
|| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 560 ACCAACAGTGAGCTTCTCCTCCACGCCAATGTCGATACTTTCATCGTGTTTCGCTCTGCT 619
Query 421 GTTCCCATTTTTGTTGCGATTGGGGAAACGCTCTACTTGCACCAACCATGGCCGTCTGTT 480
||||| ||||| ||||| |||||||||||||| | |||||| || |||||||| ||||||
Sbjct 620 GTTCCGATTTTCGTTGCCATTGGGGAAACGCTTTTCTTGCATCAGCCATGGCCATCTGTT 679
Query 481 AAAACGTGGGGATCGTTGGCTACTATATTTGGGGGAAGTTTGCTTTACGTTTTCACAGAT 540
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 680 AAAACGTGGGGATCTTTGGCTACTATATTTGGTGGAAGTTTGCTTTACGTTTTCACGGAT 739
Query 541 TACCAGTTTACAATCGCAGCGTATAGCTGGGCTCTTGCGTATCTGGTGAGTATGACTATA 600
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 740 TATCAGTTTACAATCGCAGCTTATAGCTGGGCTCTTGCGTATCTGGTGAGTATGACTATA 799
Query 601 GACTTTGTTTACATCAAGCATGTGGTTATGACCATTGGCTTGAACACATGGGGTCTTGTT 660
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 800 GACTTTGTTTACATCAAGCATGTGGTTATGACGATTGGCTTGAACACTTGGGGACTTGTT 859
Query 661 CTCTACAATAACCTTGAGGCGCTGCTTTTATTTCCACTTGAGCTGCTTATAATGGGAGAG 720
|||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||
Sbjct 860 CTCTACAATAACCTTGAGGCTCTGCTTTTGTTTCCCCTTGAGCTGCTTATAATGGGAGAG 919
Query 721 TTAAAGAAGATAAAGCATGAAATCACTGATGAGACTGATTGGTACTCGTTGCAAGTGGTT 780
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 920 TTAAAGAAGATAAAGCATGAAATCACTGACGAGACTGATTGGTACTCGTTGCAAGTGGTT 979
Query 781 TTACCTGTGGGTTTATCGTGTCTTTTCGGCTTGGCTATCTCTTTCTTCGGGTTCTCATGT 840
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 980 TTACCCGTGGGTTTATCGTGTCTTTTTGGCTTGGCTATCTCTTTCTTCGGGTTCTCATGT 1039
Query 841 CG-CAGGGCCATTTCTGCAACGGGTTTCACTGTTCTTGGGATTGTGAACAAGCTATTGAC 899
|| | ||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||
Sbjct 1040 CGTC-GGGCCATTTCTGCAACGGGGTTCACCGTTCTTGGAATTGTGAACAAGCTGTTGAC 1098
Query 900 AGTTGTGATCAATTTGGTTGTGTGGGATAAACATTCAACGTTTGTTGGAACCTTGGGGCT 959
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 AGTGGTGATCAATTTGATGGTGTGGGATAAACATTCAACGTTTGTTGGAACCTTGGGGCT 1158
Query 960 CTTGATTTGTATGTTTGGTGGAGTCATGTATCAGCAGTCTACCATGAAGAAACCAAATGC 1019
|||| |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 1159 CTTGGTTTGTATGTTTGGTGGAGTCATGTATCAACAGTCTACCATCAAGAAACCGAATGC 1218
Query 1020 -AGCACAAGAAGCTAAACCGCAAGAGCAAGACGAGGAACAAGAGAAACTTCTAGAAATGC 1078
| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1219 TA-CACAAGAAGCTAAACCGCAAGAGCAAGACGAGGAACAAGAGAAACTTCTTGAAATGC 1277
Query 1079 AGGAGAACAAGGAGAGTAACAGCATCAATATAAAGGAAACTCTGAAATCAGAAGAGAAAC 1138
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1278 AGGAGAACAAGGAGAGTAACAGCGTCGATATAAAGGAAACTCTGAAATCAGAAGAGAAAC 1337
Query 1139 TATGATCATAGTGGTTGGAGCTTGCAGTGGCTGGATTTTCTTCGGTACTGATATGATTTA 1198
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 1338 TATGATCATAGTGGTTGGAGCTTACAGTGGCTGGAGTTTCTTCGGTACTGATACGATTTA 1397
Query 1199 GTTTTCAAGTAAAGAACTACATTGTACTTAGTGGTTATGCAATTCTTTTGTAACTAGAGG 1258
|||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1398 GTTTCCAAGTATAGAACTACATTGTACTTAGTGGTTATGAAATTCTTTTGTATTTAGAGG 1457
Query 1259 TAAGAGTACTGCGTTCCTGATCCAGTAGTTGAATAATATCGATTTCTTGTTTACATTTTG 1318
|||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1458 TAAGAGTACTTCGTTCCTGATCCAGTAGTTGAACAATATCGATTTCTTCTTTACATTTTG 1517
Query 1319 ATGTGTTTGGAT-TTATTTCTTGTACCCGATTCAGATTTATATGCGAGTAAAGAATTCT 1376
|||||||||||| || ||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1518 ATGTGTTTGGATATT-TTTCTTGTACCCGATTCAGATTTATATGCGAATGAAGAATTCT 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67770735750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5