BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476789
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76360.1 | Symbols: | Protein kinase superfamily protein | ... 1358 0.0
> AT1G76360.1 | Symbols: | Protein kinase superfamily protein
| chr1:28643038-28646712 REVERSE LENGTH=1888
Length=1888
Score = 1358 bits (735), Expect = 0.0
Identities = 835/883 (95%), Gaps = 7/883 (1%)
Strand=Plus/Plus
Query 861 AGTGTGAAGTGAGATTCCTAGGGAAGTTTCATCATCCAAATTTGGTGAAGCTCTTGGGTT 920
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 AGTGTGAAGTGAGATTCTTAGGGAAGTTTCATCATCCAAATTTGGTGAAGCTCTTGGGTT 932
Query 921 ATTGCTGGGAAGAGAATCAGTTCCTCTTGGTCTATGAGTATTTGCCTAAAGGAAGCCTTG 980
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 933 ATTGCTGGGAAGAGAACCAGTTCCTTTTGGTCTATGAGTATTTGCCTAAAGGAAGCCTTG 992
Query 981 AAAATCACCTCTTTTCAAAAGGAGCAGAGGCATTGCCATGGGACACACGTTTGAAGATAG 1040
||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 993 AAAATCACCTCTTCTCAAAAGGAGCAGAGGCATTACCTTGGGATACACGTTTGAAGATAG 1052
Query 1041 CCATTGAAGCAGCTCAAGGACTTACCTTTTTGCATAACTCCGAAAAGAGTGTTATCTACA 1100
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1053 CCATTGAAGCAGCTCAAGGACTTACCTTTTTGCATAACTCCGAGAAGAGTGTTATCTATA 1112
Query 1101 GAGACTTCAAGGCTTCCAATATTCTTCTTGATTCCACCTTCCACGCCAAGCTTTCAGACT 1160
|||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1113 GAGACTTCAAAGCTTCCAATATTCTTCTCGATTCCAACTTCCACGCCAAGCTTTCAGACT 1172
Query 1161 TTGGACTAGCCAAAAATGGCCCCATTAATGGATTCTCACACGTGACCACACGTGTCATGG 1220
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 TCGGACTAGCTAAAAATGGGCCCATTAATGGATTCTCACACGTGACCACACGTGTCATGG 1232
Query 1221 GCACACAAGGCTATGCAGCTCCCGAGTACATGGCTACAGGTCATCTATATGTGAGGAGTG 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 GCACACAAGGCTATGCAGCTCCCGAGTACATGGCTACAGGTCATCTATATGTGAGGAGTG 1292
Query 1281 ATGTTTACGGGTTTGGAGTGGTACTCTTAGAGCTCTTAACCGGTTTAAGAGCATTAGACC 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 ATGTTTACGGGTTTGGAGTGGTACTCTTAGAGCTCTTAACCGGTTTAAGAGCATTAGACC 1352
Query 1341 CAAACCGACCATCTGCGCAACAGAATCTTGTGGAATGGGCTAAACCGGTGCTGAACCAGA 1400
|||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 1353 CAAACCGACCATCTGCGCAACAAAATCTTGTGGAATGGGCTAAACCGGGGTTGAACCAGA 1412
Query 1401 AGAAGAAGGTACAGAAAATGATGGACCCACGGCTCGAGCACAAATATCCACTTTTGGCAG 1460
|||||||||| |||||||||||||| |||||||||||||| || |||||||||||||| |
Sbjct 1413 AGAAGAAGGTTCAGAAAATGATGGATCCACGGCTCGAGCAGAAGTATCCACTTTTGGCGG 1472
Query 1461 TGGTCAAAACCGCCGAGCTTATTCTTCGGTGTCTCGAGGCTGACCCAAAAAACCGACCAC 1520
|| ||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 1473 TGACCAAAACCGCGGAGCTCATTCTTCGGTGTCTGGAGGCTGACCCGAAAAACCGACCGC 1532
Query 1521 CAATGGATGATGTGCTTAGAGAATTAGAAGTTGTAAGGACTATCAGAGACCAACCCAAAG 1580
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1533 CAATGGATGATGTGCTTAGAGAATTAGAAGTCGTAAGGACTATCAGAGACCAACCCCAAG 1592
Query 1581 AAGAGAGACGTAAAAGGAGCAGTGGTTCTGATCATGATAATAACCGGGTTCGTGGAAATG 1640
||||||| |||||||||||||||||| | || |||| ||||||||||||||||||||
Sbjct 1593 AAGAGAGGCGTAAAAGGAGCAGTGGT-C----CA-GATACTAACCGGGTTCGTGGAAATG 1646
Query 1641 ATTCACCGTATGGCCGTAGAACCGGTAGAACCGGATAGTCAAAGAGTTCTTTTGGATCAG 1700
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1647 ATTCACCATATGGCCGTAGAACCGGTCGAACCGGATAGTCAAAGAGTTCTTTTGGATCAG 1706
Query 1701 TCATATATGTAT-ACACACTATATACAGACGAACCACCTTTAA 1742
||||| | ||| ||||| ||||||||||||||| ||||||||
Sbjct 1707 TCATACGTATATTACACAGTATATACAGACGAACAACCTTTAA 1749
Score = 955 bits (517), Expect = 0.0
Identities = 739/837 (88%), Gaps = 52/837 (6%)
Strand=Plus/Plus
Query 1 AATCTTTCAATTaaaatccccaaaggagaaagatagaaaaagaaaaagggagagttggag 60
||||||||||||||||||||| || || | ||||| | ||||||||| ||||||||
Sbjct 70 AATCTTTCAATTAAAATCCCC-----AG-AA-A-AGAAAGA-AAAAAGGGACAGTTGGAG 120
Query 61 -aaaagTTTCTCTCTAAATCTTATGATCGTAAAGGGTGAAGCAAAGATTACTCAAAACAG 119
||||| ||||||| |||||||||||||| ||||||||| ||||||||||| |||||||
Sbjct 121 AAAAAGATTCTCTC--AATCTTATGATCGTTAAGGGTGAAACAAAGATTACTAAAAACAG 178
Query 120 AGG-AAAACAGAG----G-------AA-AGTCAAGAGCTGGTTTTATCTTAATGGGGAAC 166
||| ||||||||| | || |||||||||||||||| ||||||||||| |||
Sbjct 179 AGGAAAAACAGAGTAAAGATTACTCAAGAGTCAAGAGCTGGTTTGATCTTAATGGGAAAC 238
Query 167 TTCTGTCCTGGCTCTGGATCTTCCACTGTTCAACATGAACAGAGCCCTGCCTCCACCAAA 226
||||||||||||||||||||||||||||| ||| || || |||| ||||||||||
Sbjct 239 ATCTGTCCTGGCTCTGGATCTTCCACTGTT-AAC---CAC-GA-ACCTGTCTCCACCAAA 292
Query 227 CCCCTCCCAGTGAGACGTGTCCACAACCCAGAGAATAAAAAGTTTCCACCGGCGCTTGTA 286
|||||||||||||||||||| || | ||||||||||||||||||||| ||| |||| ||
Sbjct 293 CCCCTCCCAGTGAGACGTGTGCAGACCCCAGAGAATAAAAAGTTTCCTCCGCCGCTGGTG 352
Query 287 GCGATGCCGGCGTTAAATCCCAAGTTTCCGGC-GCCGGAAACAGGACATAAAAC-GAGAC 344
||||||||||||||| |||||| |||||| | |||||||||||||||| |||| |||||
Sbjct 353 GCGATGCCGGCGTTACATCCCACGTTTCC-ACTGCCGGAAACAGGACAT-AAACTGAGAC 410
Query 345 CTGCCGCTACCCCACCTCGGGAAAAACCGCAAC--A-GAGGACGAGATCCGTCGCTACCC 401
| ||||||||||| ||||| ||||||||||||| | || |||||||||||||| | ||
Sbjct 411 CCGCCGCTACCCCGCCTCGTGAAAAACCGCAACATAGGACGACGAGATCCGTCGAGAACC 470
Query 402 CACCTCGTGAAAAACCGCAGGAGAAGACAAGATCCGTCGAAAACCCACCTCGGGAAAAAC 461
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 471 CACCTCGTGAAAAACCGCAGGAGAAGACAAGATCCGTCGAGAACCCGCCTCGTGAAAAAC 530
Query 462 CGCAGGAGAAGACGAGATCCGTCGAAAACCCACCTCGAGAAGAACCGCAGGAGAAGACGA 521
|||||||||| || |||||||| | ||| | || | ||| |||||||||||||
Sbjct 531 CGCAGGAGAAAACAAGATCCGTTG-AAA--C-CC-C-------ACCTCAGGAGAAGACGA 578
Query 522 GATCCGTCGATAATCCGCCATTAAAGCCGGTAGAAAAACTGGGTTTAGGAAGAAAAGCAG 581
|| |||||||||||||||| | |||||||||||||||| ||||||||||||| |||||||
Sbjct 579 GACCCGTCGATAATCCGCCGTCAAAGCCGGTAGAAAAATTGGGTTTAGGAAGGAAAGCAG 638
Query 582 TGCCACCGAGCGGGAAGATAGTGACACCAAATCTAAAGATGTTTACATTAGTGGAGCTTA 641
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 639 TGCCACCGAGTGGGAAGATAGTGACACCTAATCTAAAGATGTTTACATTAGTGGAGCTTA 698
Query 642 AGACGGCTACAAAGAA-TTTCCGACCAGAGTCTGTGATCGGAGAAGGTGGATTCGGACAG 700
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 699 AGACGGCTACAAAGAACTTT-CGACCAGAATCTGTGATCGGAGAAGGTGGATTCGGACAG 757
Query 701 GTTTTTAAAGGATGGGTGGATGAGAAAACATTAGCTCCGTCGAGAGCTGGCGTCGGAATA 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 GTTTTTAAAGGATGGGTGGATGAGAAAACATTAGCTCCGTCGAGAGCTGGCGTCGGAATA 817
Query 761 CCAGTCGCCGTTAAGAAATCAAATCCTGATAGTGAGCAAGGCTTACATGAATGGCAG 817
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 818 CCAGTCGCCGTCAAGAAATCAAACCCTGATAGTGAGCAAGGCTTACATGAATGGCAG 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90411181545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5