BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476793
Length=1906
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76380.2 | Symbols: | DNA-binding bromodomain-containing pr... 2575 0.0
AT1G20670.1 | Symbols: | DNA-binding bromodomain-containing pr... 603 3e-171
> AT1G76380.2 | Symbols: | DNA-binding bromodomain-containing
protein | chr1:28651154-28654577 REVERSE LENGTH=2046
Length=2046
Score = 2575 bits (1394), Expect = 0.0
Identities = 1751/1914 (91%), Gaps = 62/1914 (3%)
Strand=Plus/Plus
Query 8 agagaga-gagaggagagagagaatgggagagGTAGCTGATAATAATAATACATTGATGA 66
||||||| |||| |||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 19 AGAGAGACAAGAGAAGAGAGAGAATGGGTGAGGTAGCTG---ATAATAATACATTGATGA 75
Query 67 AGAAGAAGAAGAAAGGTAGGCCTTCTCTACTTGACCTCCAGAAGCGAGCTCTCAAACAGC 126
||| |||||||||||||||||| || || ||||||||||| |||||||||||||||||||
Sbjct 76 AGAGGAAGAAGAAAGGTAGGCCATCACTTCTTGACCTCCAAAAGCGAGCTCTCAAACAGC 135
Query 127 AACAATTGCTCCAGAGAAGAAAGCCCGATGAAG--AA-GAAGAAGAGCTTAGATCCGGTT 183
|||||||||| ||||||||||| ||| |||||| || |||||||||||||||||| |||
Sbjct 136 AACAATTGCTTCAGAGAAGAAATCCCAATGAAGAAAACGAAGAAGAGCTTAGATCCAGTT 195
Query 184 TCAGAAACCCTAATTCCGGCGCCCGATCAAATCGCC-GA--AATTCGAATTCTGACGACG 240
|||||||||||||| | || |||||||||||||| || ||||| |||||||| ||||
Sbjct 196 CCAGAAACCCTAATTTCAGCAACCGATCAAATCGCCGGAGGAATTCAAATTCTGAAGACG 255
Query 241 ACGATGATGAGCGGAGAGACAAAAAGCATCGGCTTTTGCACGGATTGAATTCACACGACC 300
|||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 256 ACGACGATGAGAGGAGAGACAAAAAGCATCGGCTTTTACACGGATTGAATTCACACGAGG 315
Query 301 GTCGTGATTCTTCTAATTCCAAATCTGTCGGCGGCGATTTGGACTCCGATGCTA-TCAGA 359
||||||||||||||||||||||||||| |||||||||||||||||||||||| | || |
Sbjct 316 GTCGTGATTCTTCTAATTCCAAATCTGGCGGCGGCGATTTGGACTCCGATGC-ACGCA-A 373
Query 360 -CGCCGGAAAATTGACGGATCTGACGATACGGGAGAAAAGGCTTCGAAAGCGACAGACAT 418
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 374 CCGCCGGAAAATTGACGGATCTGACAATACGGGAGAAAAGGCTTCGAAAGCGACAGACAT 433
Query 419 TCTTC--C-AAGAGGGTCACTTGTGGAGTCTACACCTTTGCCAGACAAAAAGTTGCTCTT 475
||||| | |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 434 TCTTCTTCAAAGAGGGTCACTTGTGGAGTCTACACCTTTGCCAGACAAAAAGTTGTTGTT 493
Query 476 GTTCATCCTTGATAGAGTTCAAAAGAAGGATACATATGGAGTGTACTCTGACCCTGCTGA 535
||||| |||||||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 494 CTTCATTCTTGATAGAGTTCAAAAGAAGGATACTTATGGAGTGTACTCTGATCCAGCTGA 553
Query 536 TCCAGAGGAGCTTCCTGATTATTATGATATTATCAAGAATCCCATGGATTTCAGCACATT 595
||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||
Sbjct 554 TCCAGAGGAGCTTCCTGATTATTATGAGATTATCAAGAATCCGATGGATTTCACCACATT 613
Query 596 GCGGAAGAAATTAGAATCCGGGGCATACACTACCTTAGAACAATTTGAGGCAAGTCTTCA 655
|||||||||||||||||||||||||||||| ||||||||||||||| | || ||
Sbjct 614 GCGGAAGAAATTAGAATCCGGGGCATACACCACCTTAGAACAATTT---G--AG----CA 664
Query 656 AGACGTATTTTTAATATGCACGAATGCGATGGAATACAATTCAGCAGATACAGTATACTT 715
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 665 AGACGTATTTTTAATATGTACGAATGCGATGGAGTACAATTCAGCAGATACAGTATACTA 724
Query 716 CAGACAGGCACGAGCCATGCTTGAGTTGGCTAAAAAGGACTTTGGAAATTTGAGACAAGA 775
| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 725 CCGACAGGCAAGAGCTATGCTTGAGTTGGCGAAAAAGGACTTTGGAAATTTGAGACAAGA 784
Query 776 AAGTGATGGAGAAGAACCAGTGTCACTTTCACAACAGCCTAAAGTAGTCAAAAGAGGCCG 835
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 785 AAGTGATGGAGAAGAACCAGTGTCACTGTCACAACAGCCGAAAGTAGTCAAAAGAGGCCG 844
Query 836 TCCTCCAGGCTCAGGCCTTAAGAAACAGCTTGAGCAATCTTTGATTGATCGCACGACTTC 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TCCTCCAGGCTCAGGCCTTAAGAAACAGCTTGAGCAATCTTTGATTGATCGCACGACTTC 904
Query 896 TGATATATCAGCTGATGCAGCAGCACTCACTTATGCTGGAGATAGCTCTAGATTATCCGG 955
|||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 905 TGATATTTCTGCTGATGCAGCAGCATTCACTTATGCTGGAGATAGCTCTAGATTATCCGG 964
Query 956 TTCTTACAATCTAAGAAAAAATCCTCCTTCTTATGGATTCCGTCAAGCAGAAACTTCGGT 1015
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 965 TTCTTACAATCTAAGAAAAAATCCTCCTTCATATGGATTCCGTCATGCAGAAACTTCGGT 1024
Query 1016 TAGAATCAACCATAGTAGCGAGAACCAAAGTGGCTTGATGATAGATTGGGAGAAGGAGTT 1075
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1025 TAGAATCAACCATAATAGCGAGAACCAAAGTGGCTTGTTGATAGATTGGGAGAAGGAGTT 1084
Query 1076 TCCACCTTCTGTTGTGAAGGCTGTCAATAAATACGGGATGAAAAATGTCGACGAGAACAG 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 TCCACCTTCTGTTGTGAAGGCTGTCAATAAATACGGGATGAAAAATGTCGACGAGAACAG 1144
Query 1136 GCGAGATACCTACAACCAGAACTCTACTTCCTTGCAAGAATCTACGATTTTTACAATGCT 1195
||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| ||||
Sbjct 1145 GCGAGATACCTACAACCAGAACTCTGCTTCCTTGCAAGATTCTTCGATTTTTACACTGCT 1204
Query 1196 TGAAGATGATTTAAAACAGTTAACTCCAGTTGGTTTGAAAACTGAATATGGGTATGCTAA 1255
||| ||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1205 TGATGATAATTTAAAACAATTAACTCCAGTTGGACTGAAAGCTGAATATGGGTATGCTAG 1264
Query 1256 GAGTCTAGCGCGATATGCAGCAAATCTTGGTCCTGTTGCTTGGAGATTTGCCAATGCAAG 1315
||||||||| || |||||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 1265 GAGTCTAGCACGGTATGCAGCAAATATTGGTCCTGTTGCTTGGACATTTGCCAATGTAAG 1324
Query 1316 GATTGAAAAATTGTTACCAACTGGAACCGAATTTGGTCCCGGGTGGGTTGGAGAGAACCC 1375
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GATTGAAAAACTGTTACCAACTGGAACCGAATTTGGTCCCGGGTGGGTTGGAGAGAACCC 1384
Query 1376 AGAAGCGCCTCCTGAGAATCCTCCTCAACAGCAAAACGTAATGTCGGGAAAGCAGAAGTG 1435
| |||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1385 ---------T---GAGAATCCTCCTCAACAGCAAAACTTAATGTCGGGAAAGCAAAAGTG 1432
Query 1436 TTCGAATGACTTTGCGTCTGATGATCATCACCAGTCAAGCAGAATCATGTCTCCGA-CAA 1494
||||||||||| ||| |||||||||||||| |||||||| |||||||||||||| | |||
Sbjct 1433 TTCGAATGACTATGCATCTGATGATCATCATCAGTCAAGTAGAATCATGTCTCC-ATCAA 1491
Query 1495 CCTCTGTCTCAAGCTCCATCATAGGAAACAGACATTCTTCCCATGAAAGCAAAGAGTCTG 1554
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1492 CCTCTGTCTCAAGCTCCATCATAGGAAACATACATTCTTCCCATGAAAGCAAAGAGTCTG 1551
Query 1555 TGCCAACTGCTCACGTATTGAATCAAGAAACCGAGAGCAATGGTCTAGTCCGTGCTTCCA 1614
| | | | |||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1552 TTC-A---G-----GTATTGAATCAAGAAACCGAGATAAATGGTCTAGTCCGTGGTTCCA 1602
Query 1615 GCGGATTTAACCA-ACCACAAAACCAGATGCTGGAAACAGCTGTTTCGCAACAAGGCTTG 1673
||||||||||||| | || ||||||||||||||||||||||| ||||| ||||||
Sbjct 1603 GCGGATTTAACCATAA-ACCAAACCAGATGCTGGAAACAGCTGGCTCGCAGCAAGGC--- 1658
Query 1674 TTTCCGAACATAAAACAGGAATTTCAGCAGTTGCCACCGGATCTGAATGCTAGGCTTGTC 1733
|||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||
Sbjct 1659 ------AACATAAAACAGGAATTTCAGCGGTTGCCACCAGATCTCAATGCTAGGCTT-TC 1711
Query 1734 -TCACCAAACTCACCGGGCTCGAACCACCAGGCAGGTTCATCGCAGCATCCGGATTTAGC 1792
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1712 CTCACCAAACTCACCAGGCTCTAACCACCAGGCAGGTTCATCGCAGCATCCGGATTTGGC 1771
Query 1793 ATTACAACTCTAAGTACTTTCTACTAAAATTGAAAGCTTTACCGATATAGGAGGGAGAAG 1852
||||||||||||||| || ||||||| ||||||||| ||||||||||| ||||||||||
Sbjct 1772 GTTACAACTCTAAGTAATTCCTACTAATATTGAAAGCCTTACCGATATATGAGGGAGAAG 1831
Query 1853 AAGAGGCAGAGGCATGTGATTCTTGGTACAAGGTTGAATATATAGGGAAAGTCT 1906
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1832 AAGAGGCAAAGGCATGTGATTCTTGCTACAAGGTTGAATATATAGGGAAAGTCT 1885
> AT1G20670.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr1:7164190-7168021 REVERSE LENGTH=2394
Length=2394
Score = 603 bits (326), Expect = 3e-171
Identities = 932/1206 (77%), Gaps = 116/1206 (10%)
Strand=Plus/Plus
Query 385 ATACGGGAGAAAAGGCTTCGAAAGCGACAGACATTCTTCCAAGAGGGTCACTTGTGGAGT 444
||||||||||||||||||||||||||||||||||||||| ||| || || | |||||||
Sbjct 534 ATACGGGAGAAAAGGCTTCGAAAGCGACAGACATTCTTC-AAG-GG-TCTCCCGTGGAGT 590
Query 445 CT------AC-AC-C-TTTGCCAGACAAAAAGTTGCT-CTTGTTCATCCTTGATAGAGTT 494
|| || || | ||||||||||||||||||| | || |||||||| |||||| ||
Sbjct 591 CTGGTCCCACTACTCCTTTGCCAGACAAAAAGTTGTTACTC-TTCATCCTCGATAGACTT 649
Query 495 CAAAAGAAGGATACATATGGAGTGTACTCTGACCCTGCTGATCCAGAGGAGCTTCCTGAT 554
|||||||||||||| |||||||| ||||||||||| | |||||| |||||||||||||||
Sbjct 650 CAAAAGAAGGATACTTATGGAGTTTACTCTGACCCGGTTGATCCTGAGGAGCTTCCTGAT 709
Query 555 TATTATGATATTATCAAGAATCCCATGGATTTCAGCACATTGCGGAAGAAATTAGAATCC 614
|||| ||| ||||| |||||||| |||||||| |||||||||||||| |||||||| ||
Sbjct 710 TATTTTGAGATTATTAAGAATCCAATGGATTTTAGCACATTGCGGAACAAATTAGACTCT 769
Query 615 GGGGCATACACTACCTTAGAACAATTTGAGGCAAGTCTTCAAGACGTATTTTTAATATGC 674
|| ||||| | || ||||||||||||||| | | | || || |||||||||||
Sbjct 770 GGAGCATATTCCACTTTAGAACAATTTGAG--A-G-----A-GATGTGTTTTTAATATGT 820
Query 675 ACGAATGCGATGGAATACAATTCAGCAGATACAGTATACT-TCAGACAGGCACGAGCCAT 733
|| ||||| |||||||||||||||||||| || ||||| | || |||||||||| || ||
Sbjct 821 ACAAATGCAATGGAATACAATTCAGCAGACACTGTATATTATC-GACAGGCACGGGCTAT 879
Query 734 GCTTGAGTTGGCTAAAAAGGACTTTG-GAAATTTGAGACAAGAAAGTGATGGA-GAAGAA 791
| |||||||| |||||||| |||| ||| ||| || ||||| ||||||| | ||||||
Sbjct 880 ACAAGAGTTGGCAAAAAAGGATTTTGAGAA-TTTAAGGCAAGACAGTGATG-ATGAAGAA 937
Query 792 CCAGT--GTCA-CTTTCA-CAACAGC--CTA--AA--GTAGTCAA-AAGAGGCCGTCCTC 840
||| | || | || ||||||| | | || || | ||| ||||||||||||
Sbjct 938 CCACAAAGCCAACAA-CAGCAACAGCAGCAACCAAAAGTTG-CAAGAAGAGGCCGTCC-- 993
Query 841 CAGGCTCAGGCCTTAAGAAACAGCTTGAGCAATCTT-TGATTGATCGCAC-GACTTCTGA 898
| | || |||||||| | ||| | ||||| | ||||| ||||| | |||||||
Sbjct 994 --G-C-CA------AAGAAACATCCTGAACCATCTTCT-ATTGACCGCACTG-CTTCTGA 1041
Query 899 TATATCAGCTGATGCAGCAGCACTCACTTATGCTGGAGATAGCTCTAG-A--TTATCCGG 955
|| ||||||||||| | ||| || ||||||||||||||| | || || ||
Sbjct 1042 AATTTCAGCTGATGCT-C-----TCA-TTC--CTGGAGATAGCTCTAACAAGTTTTCTGG 1092
Query 956 TTCTTACAATCTAAGAAAAAATCCTCCTTCTTATGGATTCCGTCAAGCAGAAACTTCGGT 1015
| |||||||| ||||||| ||||||||| || |||||| ||||||||| | || ||
Sbjct 1093 TGCTTACAATTTAAGAAAGGCTCCTCCTTCATACAAATTCCGCCAAGCAGAATCATCAGT 1152
Query 1016 TAGAATCAACCATAGTAGCGAGAACCAA-AGTGGCTTGAT-GATAGATTGGGAGAAG-GA 1072
||||||||| |||| || || |||| | ||||| ||| | | |||| ||||||| | ||
Sbjct 1153 TAGAATCAATCATAACAGTGA-AACCCAGAGTGG-TTGGTCGGTAGACTGGGAGA-GCGA 1209
Query 1073 GTTTCCACCTTCTGTTGTGAAGGCTGTCAATAAATACGGGATGAAA-A----A-TGTCGA 1126
|||||| |||| ||||||||||| || || || || ||||||||| | | ||||||
Sbjct 1210 ATTTCCATCTTCGGTTGTGAAGGCGGTTAACAAGTATGGGATGAAACATTTCAATGTCGA 1269
Query 1127 CGAGAACAGGCGAGATACCTACAACCAGAACTCTACTTCCTTGC-AAGAATC-TACGATT 1184
|| ||||| || |||||||||||||| ||| ||||| | | ||||| | | || ||
Sbjct 1270 TGATAACAGACGCGATACCTACAACCACCTCTCGACTTC-TACCCAAGAACCAT-CGGTT 1327
Query 1185 TTTACAATGCTTGAAGATGATTTAAAACAGTTAACTCCAGTTGGTTTGAAAACTGAA-TA 1243
|| |||| ||||||||| || ||||||||||| | ||||||||| |||| | || | ||
Sbjct 1328 TTGACAACGCTTGAAGACGAGTTAAAACAGTTGATTCCAGTTGGGCTGAACA-TGGAGTA 1386
Query 1244 TGGGTATGCTAAGAGTCTAGCGCGATATGCAGCAAATCTTGGTCCTGTTGCTTGGAGATT 1303
|| || || ||||||||||| |||||||| |||||||||||||||||||| |||| | |
Sbjct 1387 CGGTTACGCGAAGAGTCTAGCACGATATGCTGCAAATCTTGGTCCTGTTGCCTGGAAAAT 1446
Query 1304 TGCCAATGCAAGGATTGAAA--A-ATTGT-TA-CCAACTGGAACCGAATTTGGTCCCGGG 1358
||| | | | |||| ||| | | ||| | || |||||| | ||||||||| ||
Sbjct 1447 TGC-A-T-CGAGGA--GAATCGAGACTGTATTGCCCTCTGGAATCAAATTTGGTCAAGGT 1501
Query 1359 TGGGTTGGAGAGAACCCAGAAGCG-CCTCCTGAGAATCCTCCTCA-ACAGCAAAACGTA- 1415
||||||||||||||||||| || | ||| ||| || | |||| | | |||||| ||
Sbjct 1502 TGGGTTGGAGAGAACCCAGCAG-GACCTGAAGAGGATGATTCTCAGAAA-CAAAACATAT 1559
Query 1416 -A-TGTCG--GG-AAAGCAGAAGTGTTCGAATGACTTTGCGTCTGATGATCATCACCAGT 1470
| ||||| || ||| || |||||||| |||||||| ||||||||||||||| | |
Sbjct 1560 TAATGTCGTCGGGAAAACAAAAGTGTTCTAATGACTTAGCGTCTGATGATCATT-C---T 1615
Query 1471 CAAGCAGAATCATGTCTCCGACAACCTCTGTCTCAAGCTCCAT-CATAGGAAACAGACAT 1529
|| ||||||| ||||||| || | || || ||||| | | | ||||||||||||||||
Sbjct 1616 -AA-CAGAATCCTGTCTCCAACCGCTTCAGTTTCAAG-TGCTTTCATAGGAAACAGACAT 1672
Query 1530 TCTTCC 1535
|||||
Sbjct 1673 GCTTCC 1678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94377024600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5