BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476794
Length=2858
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76390.1 | Symbols: | ARM repeat superfamily protein | chr1... 4303 0.0
AT1G20780.1 | Symbols: PUB44, ATPUB44, SAUL1 | senescence-assoc... 1735 0.0
AT1G76400.1 | Symbols: | Ribophorin I | chr1:28658554-28661710... 237 5e-61
> AT1G76390.1 | Symbols: | ARM repeat superfamily protein | chr1:28655399-28658711
FORWARD LENGTH=2856
Length=2856
Score = 4303 bits (2330), Expect = 0.0
Identities = 2690/2864 (94%), Gaps = 23/2864 (1%)
Strand=Plus/Plus
Query 10 CCTCCGGTCTCAAATTCAGG--CAAAAATATCTCTTTCGGATTCATACTTGA-GACA-AG 65
||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||| |
Sbjct 1 CCTCCGGTCTC-GATTCAGGCACAAAAATATCTCTGGCGGATTCATACTTGACTACACCG 59
Query 66 A-G-T-AGAAACACCGATGTTGTGTTCGATTTAACACGTTTTCTATTCAAAGATTTGGAA 122
| | | | ||| ||| ||| ||||||| || |||||||| ||||||| ||| |||
Sbjct 60 ATGTTGTGTTACATGGAT-TTG-ACTCGATTTCACCCGTTTTCTTTTCAAAGGTTTTGAA 117
Query 123 TTTAATCAGAGATCGTTCTCAATCTCTCAAGCTAGAAGAAGACGAAGCTAAGGTTCTTTG 182
||||| ||||||||||||||||| ||||||||||| |||||| |||||||| | |||||
Sbjct 118 TTTAACCAGAGATCGTTCTCAATTTCTCAAGCTAGCAGAAGAAGAAGCTAAAGACCTTTG 177
Query 183 TTCTTGGCTT--GCTCAGTTTCCTCAGGGCTTCTTGTGTTTTGAACT---GAATCAATTC 237
||||||| || | ||| ||| |||||||||||| ||||||||||| ||||||||||
Sbjct 178 TTCTTGG-TTAAG-ACAGCTTCTTCAGGGCTTCTTTTGTTTTGAACTGAAGAATCAATTC 235
Query 238 ATCATATGGCCGGAAGTGGAAGTTGGGATGGAAGCCAATCAGAAAATAGCTCACAATTCG 297
|||| ||||| ||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 236 ATCAGATGGCTGGAAGTGGAAGTTGGGATGGAAGCCAATCGGATAACAGCTCACAATTCG 295
Query 298 AGCCAGGGATTGATAATATATACGAAGCTTTTATCTGTCCATTGACTAAGCAAGTTATGC 357
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 296 AGCCAGGGATTGATAACATATACGAAGCTTTTATCTGTCCATTGACAAAGCAAGTTATGC 355
Query 358 ATAATCCTGTGACTTTAGAGAATGGTCAGACATTTGAGCGTGATGCTATTGAGAAATGGT 417
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 356 ATAATCCTGTCACTTTAGAGAATGGTCAGACATTTGAGCGTGAAGCTATTGAGAAATGGT 415
Query 418 TCCAAGAATGTCGCGAAAACTGTCAACCTCTATCTTGTCCTATAACTTCCAAGCAGCTGA 477
| ||||||||||| |||||| |||||||||||||||||||||||||||| ||| || |||
Sbjct 416 TTCAAGAATGTCGTGAAAACGGTCAACCTCTATCTTGTCCTATAACTTCTAAGGAGTTGA 475
Query 478 GTATCACTGATCTAAGCCCGAGTATAGCTTTACGTAACACTATTGAAGAGTGGAGAGCTA 537
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 476 GTATCACTGATCTAAGTCCAAGTATAGCTTTACGTAACACTATTGAAGAGTGGAGAGCAA 535
Query 538 GGAATGATGCTTTGAAGCTTGATATTGCTCGTCAGTCACTTTATTTGGGAAATGCTGAGA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GGAATGATGCTTTGAAGCTTGATATTGCTCGTCAGTCACTTTATTTGGGAAATGCTGAGA 595
Query 598 CTAATATTTTGCTAGCTTTGAAGAATGTCCGAGAGATTTGCAGGAACATACGTAAACTTA 657
||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||| |||
Sbjct 596 CTAATATTTTGCTGGCTTTGAAGAATGTCAGAGAGATTTGTAGGAATATACGTAAAATTA 655
Query 658 GGCAACGTGTGCGCAATCCTCAGCTTGTTCGGTTGATTACCGACATGCTAAAAAGTAGTA 717
||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 656 GGCAACGTGTGTGCAATCCTCAGCTTGTTCGGTTGATTACCGATATGCTAAAGAGTAGTA 715
Query 718 GTCATGAAGTGCGGTATAAGGCTCTACAAACTCTTCAAGTAGTCGTTGAAGGAGATGAAG 777
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 GTCATGAAGTGCGGTGTAAGGCTCTACAAACTCTTCAAGTAGTCGTTGAAGGAGATGAAG 775
Query 778 AGAGCAAGGCAATAGTAGCTGAAGGAGACACCGTGCGTACTATAGTTAAGTTCTTGTCCC 837
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 776 AGAGCAAGGCAATAGTAGCTGAAGGAGACACTGTGCGTACTATAGTTAAGTTCTTGTCTC 835
Query 838 AAGAGCCATCAAAGGGGAGGGAGGCAGCTGTTTCCGTGATGTTCGAGCTCTCCAAATCCG 897
|||||||||||||||||||||| ||||||||||||||| |||| |||||||| ||||| |
Sbjct 836 AAGAGCCATCAAAGGGGAGGGAAGCAGCTGTTTCCGTGTTGTTTGAGCTCTCTAAATCTG 895
Query 898 AAGCATTATGCGAGAAGATTGGATCAATCCGTGGAGCAATCATCTTATTGGTTGGTCTGA 957
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 896 AAGCATTATGCGAGAAGATTGGATCAATCCATGGAGCAATCATCTTATTGGTTGGTCTGA 955
Query 958 CAAGCAGCAAATCAGAGAATGTTTCAACTGTTGAGAAAGCTGATCAAACTTTGACAAACT 1017
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 956 CAAGCAGCAAATCAGAGAATGTTTCAACTGTTGAGAAAGCTGATAAAACTTTGACAAATT 1015
Query 1018 TGGAGAGATCAGAGGAAAATGTTCGACAGATGGCTACCAATGGTAGACTGCAGCCTCTGC 1077
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1016 TGGAGAGGTCAGAGGAAAATGTTCGACAGATGGCTATCAATGGTAGACTGCAGCCTCTTC 1075
Query 1078 TTGCTAAACTTCTTGAAGGTTCACCTGAAACAAAAGTCTCCATGGCTTTCTATCTTGGGG 1137
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1076 TTGCTAAACTTCTTGAAGGTTCACCGGAAACAAAAGTTTCCATGGCTTTCTATCTTGGGG 1135
Query 1138 TTCTTGCCTTGAATAACGATGTGAAAGTTATTGTGGCTCAGACTGTGGGTTCTTCTCTTA 1197
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TTCTTGCTTTAAATAACGATGTGAAAGTTATTGTGGCTCAGACTGTGGGTTCTTCTCTTA 1195
Query 1198 TCGATCTTATGAGAACTCGCGACATGCGTCAACGGGAAGCTGCTTTGGGAGCTCTTAACA 1257
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1196 TCGATCTTATGAGAACTCGCGACATGAGCCAACGGGAAGCTGCTTTGGGAGCTCTTAACA 1255
Query 1258 ACATCTCATCGTTTGAAGGGAGTGCCAAAGTCTTAATCAACACCGGAATTCTCCCACCGC 1317
|||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1256 ACATCTCATCCTTTGAAGGGAGTGCTAAACTCTTAATCAACACCGGAATTCTCCCACCGC 1315
Query 1318 TTATCAAAGACTTGTTCTATGTTGGGCCAAACCAGCTTCCAATTCGACTTAAAGAAGTCT 1377
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1316 TTATCAAAGACTTGTTCTATGTTGGGCCAAACCAGCTTCCAATCCGACTTAAAGAAGTCT 1375
Query 1378 CCGCCACCATTCTTGCTAATATAGTGAACATTGGCTATGAATTTGACAAAGTTCCTGTTG 1437
| || || |||||||| ||||||||||||||||| || || || ||||||||||||||||
Sbjct 1376 CTGCAACTATTCTTGCCAATATAGTGAACATTGGGTACGACTTCGACAAAGTTCCTGTTG 1435
Query 1438 GACCTGATCACCAAACTCTTGTTTCAGAGGAAATAGTGGAGAACCTACTCCAACTAACTA 1497
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1436 GACCTCATCACCAAACTCTTGTTTCAGAGGAAATAGTGGAGAACCTTCTCCAACTAACAA 1495
Query 1498 GCAACACGGGTCCAGAAATCCAGGGAAAGTTGTTGGCGGTTCTTGTTGGACTCACGAGCT 1557
||||||| |||||||||||||| |||||| ||||||||||||||||||||||||| ||||
Sbjct 1496 GCAACACTGGTCCAGAAATCCAAGGAAAGCTGTTGGCGGTTCTTGTTGGACTCACTAGCT 1555
Query 1558 GTCCAAACTCGGTTATTAATGTTGTTTCTGCGATCAGAAACTCAGCTGCCATCATTAGCT 1617
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1556 GTCCAAACTCGGTTATTAATGTTGTTTCTGCCATCAGAAACTCAGCTGCCATCATAAGCT 1615
Query 1618 TGGTTCAGTTTGTTGAGATTCATGAGAACGATGATTTGCGTTTAGCTTCTATCAAGCTAC 1677
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 1616 TGGTTCAGTTTGTTGAGATACATGAGAACGATGATTTGCGGTTAGCTTCTATCAAGCTTC 1675
Query 1678 TTCACAACATTTCCCCACACATGAGTGAAGAACTAGCCAATGTGTTGCGTGGCACTGTTG 1737
|||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1676 TTCATAACATTTCCCCACACATGAGTGAAGAACTAGCCAATGCGTTGCGTAGCACTGTTG 1735
Query 1738 GACAGCTCGGAAACCTTGTTGCGATCATATCAGAGAATACAACAACAATCACTGAGGAAC 1797
|||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1736 GACAGCTCGGAAGCCTTGTTTCGATCATATCAGAGAATACACCAACAATCACTGAGGAAC 1795
Query 1798 AAGCTGCAGCTGCTGGACTTTTAGCTGAACTTCCTGAGAGAGATTTGGGTCTCACAATGA 1857
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1796 AAGCTGCAGCTGCTGGACTTTTAGCTGAACTTCCTGAGAGAGATTTGGTTCTGACAATGA 1855
Query 1858 GATTGTTAAGAGAAGGTGCTTTTGAGAAAATCATCTCCAAGATAGTTGGTATTCGCCAAG 1917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 GATTGTTAAGAGAAGGTGCTTTTGAGAAAATCATCTCCAAGATAGTTGGTATTCGCCAAG 1915
Query 1918 GAGAAATTAGGGGAATCCGGTTCGAGAGAACATTTCTCGAAGGACTTGTTAGTATTCTCG 1977
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 GAGAAATCAGAGGAATCCGGTTCGAGAGAACATTTCTCGAAGGACTTGTTAGTATTCTCG 1975
Query 1978 CTCGGATCACCTTCGCACTCACCAAGGAGACTCATGCCG-TTTCGTTCTGCTGTGAGAAC 2036
|||||||||||||||||||||||||||||||| | ||| ||| |||||||||||||||
Sbjct 1976 CTCGGATCACCTTCGCACTCACCAAGGAGACTGACGCCACTTT-GTTCTGCTGTGAGAAA 2034
Query 2037 AATCTTACTTCACTTTTCCTGGATCTTCTTCAATCCAACAGTCAAGATAACATCCAGATG 2096
|||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 2035 AATCTTCCTTCACTTTTCCTTGATCTCCTTCAATCCAACAGTCAAGATAACATCCAGAGG 2094
Query 2097 GCTTCTGCAATAGCATTGGAGAATCTTTCACTTGAATCCAAGAATCATACAAAGATACCC 2156
|||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 2095 GCTTCTGCAACAGCATTGGAGAATCTTTCACTTGAATCCAAAAATCTTACAAAGATACCT 2154
Query 2157 GAACTGCCTCCTCCCAACT-ACTGTGCATCTATCTTTTCATGTCTGAGCAAACCACCTGT 2215
|||||||||||||| | || |||||| ||| ||||||||||||||||||||||| |||||
Sbjct 2155 GAACTGCCTCCTCCTA-CTTACTGTGTATCCATCTTTTCATGTCTGAGCAAACCGCCTGT 2213
Query 2216 AGTTCTAGGGATTTGCAAGATCCATCAAGGTATATGTTCAGTGAGAGAAAGCTTTTGTCT 2275
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 2214 TGTTCTAGGGATTTGCAAGATCCATCAAGGGATATGTTCAGTAAGAGAAAGCTTTTGTCT 2273
Query 2276 CGTTGAAGGACAAGCAGTAGATAAGTTGGTTGATCTCTTAGACCATGAAAACGAGAAGGT 2335
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 2274 CGTTGAAGGACAAGCAGTAGATAAGTTGGTTGATCTCTTAGACCATGAAAATGACAAGGT 2333
Query 2336 GGTTGGACCAGCACTTGCAGCTCTTTCTACATTGTTAGAAGACGGTTTAGATGTTGTACA 2395
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2334 GGTTGGACCAGCACTTGCAGCTCTCTCTACATTGTTAGAGGACGGTTTAGATGTTGTACA 2393
Query 2396 AGGAGTGAGATTGATTGATGAAGCAGATGGGATTACACCTATATTAAACGTTCTTTTGGA 2455
|||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 2394 AGGAGTGAGATTAATTGATGAAGCAGACGGGATTACGCCTATATTAAATGTTCTTTTGGA 2453
Query 2456 GAATCGAACAGAGAATTTAAGGATTAGAGCTGTTTGGATGGTTGAGAGGATCTTACGTAT 2515
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 2454 GAATCGAACAGAGAATTTAAGGATTAGAGCTGTGTGGATGGTCGAGAGGATCTTACGTAT 2513
Query 2516 TGAAGAAATAGCTAGAGAAGTGGGAGAAGAACAAAACGTAACTGCAGCACTTGTGGACGC 2575
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2514 TGAAGAAATAGCTAGAGAAGTGGGAGAAGAACAAAATGTAACTGCAGCACTTGTGGACGC 2573
Query 2576 CTTTCAAAACGCAGATTTTAGGACGCGGCAGATTGCTGAGAAGGCGTTGAGGCACATCGA 2635
|||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 2574 CTTTCAAAACGCCGATTTTAGGACACGACAGATTGCAGAGAAGGCGTTGAGGCACATCGA 2633
Query 2636 TAAAATCCCAAACTTCTCTGGTATATTCACCAACATTGGTTAGATCTATATACATTCTTG 2695
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2634 CAAAATCCCAAACTTCTCTGGTATATTCACCAACATTGGTTAGATCTATATACATTCTTG 2693
Query 2696 TAAATGATTTTAAGATAATTTGATTCATTTGTTAAACTCAGAGAAACTAGAGCTGTCTTT 2755
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2694 TAAATGATTTTAAGATAATATGATTCATTTGTTAAACTCAGAGAAACTAGAGCTGTCTTT 2753
Query 2756 CAAAGTTGATAAACACTGCTCATTAAGGAACAAAAAATTTCTAAAGGTAGTGCA-TTCAA 2814
|||||||||||||||||||||||| |||||||||| ||||||| || |||| | |||||
Sbjct 2754 CAAAGTTGATAAACACTGCTCATTGAGGAACAAAATTTTTCTAATGGGAGTG-AGTTCAA 2812
Query 2815 AAGTCTGGTATTTAAGCTTAAGAGGATCTGCTACATTTAACTTT 2858
||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2813 AAGTCTGGTATTTAAGCGTAAGAGGATTTGCTACATTTAACTTT 2856
> AT1G20780.1 | Symbols: PUB44, ATPUB44, SAUL1 | senescence-associated
E3 ubiquitin ligase 1 | chr1:7217128-7220784 FORWARD
LENGTH=2877
Length=2877
Score = 1735 bits (939), Expect = 0.0
Identities = 1979/2468 (80%), Gaps = 124/2468 (5%)
Strand=Plus/Plus
Query 254 TGGAAGTTGGGATGGAAG-CCAATCAGAAAATAGCTCACAATTCGAGCCAGGGA-TTGAT 311
|||||| | |||||| | ||| ||||| ||||||| || || |||| | ||| | |||
Sbjct 302 TGGAAGCTCGGATGG-TGACCAGTCAGATGATAGCTCTCATTTTGAGCGA-GGAGTAGAT 359
Query 312 AATATATACGAAGCTTTTATCTGTCCATTGACTAAGCAAGTTATGCATAATCCTGTGACT 371
|||| || ||||| || ||||| |||||||| ||| | ||||||||| ||||||| |||
Sbjct 360 CATATCTATGAAGCATTCATCTGCCCATTGACAAAGGAGGTTATGCATGATCCTGTCACT 419
Query 372 TTAGAGAATGGTCAG-ACATTTGAGCGTGATGCTATTGAGAAATGGTTCCAA-GAATGTC 429
||||||||||||| | ||||| |||||||| || |||||||||||||| ||| || ||||
Sbjct 420 TTAGAGAATGGTC-GAACATTCGAGCGTGAAGCCATTGAGAAATGGTT-CAAGGAGTGTC 477
Query 430 GCGAAAACTGTCA-ACCT-CTATCTTGTCCTATAACTTC-CAAGCAGCTGAGTATCACTG 486
| | | | || | |||| || ||||| ||| | || || | || |||||| || |||||
Sbjct 478 G-GGACAGTGGGAGACCTCCT-TCTTGCCCTTTGACATCTC-AGGAGCTGACTAGCACTG 534
Query 487 ATCTAAGC-CCGAGTATAGCTTTACGTAACACTATTGAAGAGTGGAGAGCTAGGAATGAT 545
|| ||||| || || |||||| | ||||||||||| |||||||||||| | |||||||||
Sbjct 535 ATGTAAGCGCC-AGCATAGCTCTGCGTAACACTATCGAAGAGTGGAGATCCAGGAATGAT 593
Query 546 GCTTTGAAGCTTGATATTGCTCGTCAGTCACT-TTATTT-GGGAAATGCTGAGACTA-AT 602
||| |||||||| ||||||||||||||||| || ||| ||| ||||||||||| | ||
Sbjct 594 GCTGCCAAGCTTGACATTGCTCGTCAGTCACTGTT-TTTAGGG-AATGCTGAGAC-AGAT 650
Query 603 ATTTTGCTAGCTTTGAAGAATGTCCGAGAGATTTGCAGGAACATACG-T-AAACTTAGGC 660
||||||| |||||||| | |||| ||| |||||||||||| ||| || | ||| |||||
Sbjct 651 ATTTTGCAAGCTTTGATGCATGTGCGACAGATTTGCAGGACCATCCGATCAAA--TAGGC 708
Query 661 AACGTGTGCGCAATC-CTCAGCTTGTTCGGT-TGATTACCGACATGCTAAAAAGTAGTAG 718
| |||| ||||| | |||||||| || | |||| | ||||||| ||||||||| |||
Sbjct 709 ATGGTGTACGCAA-CTCTCAGCTT-ATCCATATGATCATCGACATGTTAAAAAGTACTAG 766
Query 719 TCATGA-AGTGCGGTATAAGGCTCTACAAACTCTTCAAGTAGTCGTTGAAGGAGATGAAG 777
||| | ||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 767 CCAT-AGAGTGCGGTATAAGGCTCTACAAACTCTGCAAGTTGTCGTTGAAGGAGATGATG 825
Query 778 AGAGCAAGGCAATAGTAGCTGAAGGAGACACCGTGCGTACTA-TAGTTAAGTTCTTGTCC 836
|||||||||| |||||||||||||| ||||| |||||||| | ||||||||||||| ||
Sbjct 826 AGAGCAAGGCGATAGTAGCTGAAGGGGACACTGTGCGTAC-ACTAGTTAAGTTCTTATCA 884
Query 837 CAAGAGCCATCAAAGGGGAGGGAGGCAGCTGTTTCCGTGATGTTCGAGCTCTCCAAATCC 896
|| ||||||||||||||||||||||||||||||||| || |||| |||||||| |||||
Sbjct 885 CATGAGCCATCAAAGGGGAGGGAGGCAGCTGTTTCCTTGCTGTTTGAGCTCTCTAAATCA 944
Query 897 GAAGCATTATGCGAGAAGATTGGATCAATCCGTGGAGCAATCATCTTATTGGTTGGTCTG 956
||||| || |||||||||||||| || || | ||||||| | || |||||||||||||||
Sbjct 945 GAAGCTTTGTGCGAGAAGATTGGTTCCATTCATGGAGCACTAATATTATTGGTTGGTCTG 1004
Query 957 ACAAGCAGCAAATCAGAGAATGTTTCAACTGTTGAGAAAGCTGATCA-AACTTTG-ACAA 1014
||||||||||| ||||| |||||||||| |||||||||||||||| | ||| ||| | ||
Sbjct 1005 ACAAGCAGCAACTCAGAAAATGTTTCAATTGTTGAGAAAGCTGAT-AGAACCTTGGA-AA 1062
Query 1015 ACT-TGGAGAGATCAGAGGAAAATGTTCGACAGATGGCTACCA-ATGGTAGACTGCAGCC 1072
| | ||||||| |||||||||| |||| | ||||||||| | | |||||||||| |||||
Sbjct 1063 A-TATGGAGAGGTCAGAGGAAATTGTTAGGCAGATGGCTTC-ATATGGTAGACTCCAGCC 1120
Query 1073 TCTGCTTG-CTAAACTTCTTGAAGGTTCACCTGAAACAAAAGTCTCCATGGCTTTCTATC 1131
||| || | | ||||| |||||||||||||||||||||||| |||| ||||||| || ||
Sbjct 1121 TCTTCTAGGC-AAACTCCTTGAAGGTTCACCTGAAACAAAACTCTCTATGGCTTCCTTTC 1179
Query 1132 TTGGGGTTCTTGCCTTGAATAACGATGTGAAAGTTATTGTGGCTCAGACTGTGGGTTCTT 1191
| |||| ||| |||| |||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 1180 TCGGGGAGCTTCCCTTAAATAACGATGTGAAGGTTCTTGTGGCTCAGACTGTGGGTTCTT 1239
Query 1192 CTCTTATCGATCTTATGAGAACTCGCGACATGCGTCAACGGGAAGCTGCTTTGGGAGCTC 1251
||||| ||||||||||||||| | | ||||||| |||||||||||||| ||| |||||
Sbjct 1240 CTCTTGTCGATCTTATGAGAAGTGGTGACATGCCCCAACGGGAAGCTGCCTTGAAAGCTC 1299
Query 1252 TTAACAACATCTCATCGTTTGAAGGGAGTGCCAAAGTCTTAATCAACACCGGAATTCTCC 1311
||||||| ||||||||||| ||||||||||| || ||||| |||| || ||||||||||
Sbjct 1300 TTAACAAAATCTCATCGTTCGAAGGGAGTGCTAAGGTCTTGATCAGCAAAGGAATTCTCC 1359
Query 1312 CACCGCTTATCAAAGA-CTTGTTCTATGTTGGGCCAAACCAGCTTCCAATTCGACTT-AA 1369
| || ||||||||||| || ||| ||||| ||||||||| | ||||||||||| || ||
Sbjct 1360 CCCCACTTATCAAAGATCT-GTTTTATGTGGGGCCAAACAACCTTCCAATTCGG-TTGAA 1417
Query 1370 AGAAGTCTCCGCCACCATTCTTGCTAATATAGTGAACATTGGCTATGAATTTGACAAAGT 1429
||||||||| ||||| ||||||||||| ||||||||||| || ||||| ||||||||||
Sbjct 1418 AGAAGTCTCTGCCACTATTCTTGCTAACATAGTGAACATCGGGTATGACTTTGACAAAG- 1476
Query 1430 TCCTGTTGGACCTGATCACCAAACTCTTGTTTCAGAGGAA-ATAGTGGAGAACCTACTCC 1488
|| || | | | | ||||||||| || | ||||||||| || ||||
Sbjct 1477 -CC------AC-T---C-------T-T-GTTTCAGAG-AACAGAGTGGAGAATCTGCTCC 1515
Query 1489 AACTAACTAGCAACACGGGTCCAGAAATCCAGGGAAAGTTGTTGGCGGTTCTTGTTGGAC 1548
| |||| ||||||||| ||||||| |||||| | ||| |||||| ||||||||||||||
Sbjct 1516 ATCTAATTAGCAACACAGGTCCAGCGATCCAGTGCAAGCTGTTGGAGGTTCTTGTTGGAC 1575
Query 1549 TCACGAGCTGTCCAAACTCGGTTATTAATGTTGTTTCTGCGATCAGAAAC-TCAGCTGCC 1607
|||| || || ||||| | ||| || ||||||| ||| || | |||| || | |||
Sbjct 1576 TCACCAGTTGCCCAAAAACAGTTCCAAAAGTTGTTTATGCAATTA-AAACCTCCGGTGCA 1634
Query 1608 ATCATTAGCTTGGTTCAGTTTGTTGAGATTC-ATGAGAACGATGATTTGCGTTTAGCTTC 1666
||||| || |||||||||||| | ||| | | | ||||| ||||||||||| || |||||
Sbjct 1635 ATCATCAGTTTGGTTCAGTTTATAGAGGTCCGA-GAGAATGATGATTTGCGGTTGGCTTC 1693
Query 1667 TATCAAGCTACTTCACAACATTTCCCCACACATGAGTGAAGAACTAGCCAATGTGTTGCG 1726
|| ||||| ||||| ||| |||||||| |||||||||||||||||| || | || |
Sbjct 1694 CATAAAGCTTCTTCATAACCTTTCCCCATTCATGAGTGAAGAACTAGCTAAGGCCTTATG 1753
Query 1727 TGGCACTGTTGGACAGCTCGGAAACCTTGTTGCGATCATATCAGAGAATACAACAACAAT 1786
|||||||| |||||| ||||||| ||||||||| ||||| ||||| || ||| | ||||
Sbjct 1754 TGGCACTGCTGGACAACTCGGAAGCCTTGTTGCTATCATTTCAGAAAAGACA-C--CAAT 1810
Query 1787 CACTGAGGAACAAGCTGCAGCTGCTGGACTTTTAGCTGAACTT-CCTGAGAGAGATTTGG 1845
|||||| ||||| ||||| |||||||| || ||||||||| || || || || |||||||
Sbjct 1811 CACTGAAGAACAGGCTGCTGCTGCTGGGCTCTTAGCTGAA-TTGCCAGATAGGGATTTGG 1869
Query 1846 GTCTCACA-ATGAGATTGTTAAGA-GAAGGTGCTTTTGAGAAAATCATCTCCAA-GATAG 1902
|||| || | || || |||| || | ||||||||||| |||||||| ||||| | | |
Sbjct 1870 GTCTTACTCAGGAAAT-GTTA-GAAGTTGGTGCTTTTGAAAAAATCATATCCAAAG-T-G 1925
Query 1903 TT-GGTATTCGCCAAGGAGAAATTAGGGGAATCCGGTTCGAGAGAACATTT-CTCGAAGG 1960
|| || || |||||||| || || | |||||| |||| | || | | ||| || |||||
Sbjct 1926 TTTGGAATCCGCCAAGGGGATATCAAGGGAATGAGGTTTGTGA-ATCCTTTTCTGGAAGG 1984
Query 1961 ACTTGTTAGTATTCTCGCTCGGATCACCTTCGCACTCACCAAGGAGACTCATGCCGTTT- 2019
|||||| |||| || ||| |||| || || | ||| ||| ||| ||| ||| ||
Sbjct 1985 ACTTGTGCGTATACTTGCTAGGATTACTTTTGTTTTCAACAAAGAGGCTCGGGCCATTAA 2044
Query 2020 CGTTCTGCTGTGAGAACAATCTTACTTCACTTTTCCTGGATCTTCTTCAATCCAACAGTC 2079
| || ||| ||||| || || || | ||||| ||||| |||| || ||||||||| | |
Sbjct 2045 CTTT-TGCCGTGAGCACGATGTTGCGTCACTCTTCCTTCATCTGCTCCAATCCAACGGGC 2103
Query 2080 AAGATAACATCCAGATGGCT-TCTGCAATAGCATTGGAGAATCTTTCACTTGAATCCA-A 2137
|||||||||| ||||||| | || || || || || |||||||||||||| || || | |
Sbjct 2104 AAGATAACATACAGATGG-TGTCCGCCATGGCTTTAGAGAATCTTTCACTAGAGTCTATA 2162
Query 2138 GAATCAT-ACAAAGATACCCGAACTGCCTCCTCCCAACTACTGTG-CATCTATCTTTTCA 2195
|| | | ||| ||| || || | ||||||| |||||||||| | || ||||||||
Sbjct 2163 -AAGC-TGACACGGATGCCTGATCCGCCTCCTGTGAACTACTGTGGC-TCGATCTTTTCG 2219
Query 2196 TGTCTGAGCAAACCAC-CTGTAGTTCTA-GGGATTTGCAAGATCCATCAAGGTATATGTT 2253
||| |||| ||||||| | || || | ||| | ||||||||||| || || |||||||
Sbjct 2220 TGTGTGAGAAAACCACAC-GTTGTAA-ACGGGCTGTGCAAGATCCACCAGGGAATATGTT 2277
Query 2254 CAGTGAGAGAAAGC-TTTTGTCTCGTTGAAGGACAAGCAGTAGATAAGTTGGTTGATCTC 2312
|| | ||||||| | ||||| || || |||||| ||| || || || || || | |||
Sbjct 2278 CATTAAGAGAAA-CATTTTGCCTTGTCGAAGGAGGAGCTGTGGAGAAATTAGTGGCTCTA 2336
Query 2313 TTAGACCATGAAAACGAGAAGGTGGTTG-GACCAGCACTTGCAGCTCTTTCTA-CATTGT 2370
|||||||||||||| | ||| ||||||| | || |||||||||||||| || | | ||
Sbjct 2337 TTAGACCATGAAAATGTGAAAGTGGTTGAGGCC-GCACTTGCAGCTCTATCGAGC-TTAC 2394
Query 2371 TAGAAGACGGTTTAGATGTTGTACAA-GGAGTGA-GATTGATT-GATGAAGCAGATGGGA 2427
|||||||||| |||||||| | | || || || | ||| | | |||||||| |||||||
Sbjct 2395 TAGAAGACGGGTTAGATGTAG-AGAAAGGGGTCAAGAT--ACTCGATGAAGCGGATGGGA 2451
Query 2428 TTACACC-TATATTAAACGTTCTTTTGGAGAATCGAACAGAGAATTTAAGGATTAGAGCT 2486
| || | |||| |||||||||| |||||| |||||||||| | | | |||||
Sbjct 2452 T-ACGGCATATACTAAACGTTCTGAGGGAGAACCGAACAGAGAGGCTGACAAGGAGAGCG 2510
Query 2487 GTTTGGATGGTTGAGAGGATCTTACGTATTGAAGAAATAGCTAGAGAAGTGGGAGAAGAA 2546
||||||||||| || |||||||| || |||||||| ||||| ||||| |||| ||| |||
Sbjct 2511 GTTTGGATGGTGGAAAGGATCTTGCGGATTGAAGACATAGCAAGAGAGGTGGCAGAGGAA 2570
Query 2547 CAAAACGTAA-CTGCAGCACTTGTGGACGCCTTTC-AAAACGCAGATTTTAGGACGCGGC 2604
|| | | | | | || |||||||||||||| |||| ||||||| |||||||| ||| | |
Sbjct 2571 CAGAGCCTGAGC-GCTGCACTTGTGGACGC-TTTCCAAAACGCTGATTTTAGAACGAGAC 2628
Query 2605 AGATTGCTGAGAAGGCGTTGAGGCACATCGATAAAATCCCAAACTTCTCTGGTATATTCA 2664
|||| |||||||| ||||||| ||||| ||||| |||||||||||||| ||||||||
Sbjct 2629 AGATCGCTGAGAACGCGTTGAAACACATTGATAAGATCCCAAACTTCTCAAGTATATTC- 2687
Query 2665 CCAA-CAT 2671
|||| |||
Sbjct 2688 CCAAACAT 2695
> AT1G76400.1 | Symbols: | Ribophorin I | chr1:28658554-28661710
REVERSE LENGTH=2042
Length=2042
Score = 237 bits (128), Expect = 5e-61
Identities = 149/159 (94%), Gaps = 2/159 (1%)
Strand=Plus/Minus
Query 2701 GATTTTAAGATAATTTGATTCATTTGTTAAACTCAGAGAAACTAGAGCTGTCTTTCAAAG 2760
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2042 GATTTTAAGATAATATGATTCATTTGTTAAACTCAGAGAAACTAGAGCTGTCTTTCAAAG 1983
Query 2761 TTGATAAACACTGCTCATTAAGGAACAAAAAATTTCTAAAGGTAGTGCA-TTCAAAAGTC 2819
||||||||||||||||||| |||||||||| ||||||| || |||| | ||||||||||
Sbjct 1982 TTGATAAACACTGCTCATTGAGGAACAAAATTTTTCTAATGGGAGTG-AGTTCAAAAGTC 1924
Query 2820 TGGTATTTAAGCTTAAGAGGATCTGCTACATTTAACTTT 2858
|||||||||||| ||||||||| ||||||||||||||||
Sbjct 1923 TGGTATTTAAGCGTAAGAGGATTTGCTACATTTAACTTT 1885
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 142022615633
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5