BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476796
Length=2036
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76400.1 | Symbols: | Ribophorin I | chr1:28658554-28661710... 3229 0.0
AT1G76390.1 | Symbols: | ARM repeat superfamily protein | chr1... 226 7e-58
> AT1G76400.1 | Symbols: | Ribophorin I | chr1:28658554-28661710
REVERSE LENGTH=2042
Length=2042
Score = 3229 bits (1748), Expect = 0.0
Identities = 1944/2040 (95%), Gaps = 8/2040 (0%)
Strand=Plus/Plus
Query 1 AAGCGAGTTCGGAGACTGGTTGGAAAAATCTGACAAGGATGAAGCAATCGAGTGTCGTCG 60
|||| |||||| |||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1 AAGCTAGTTCGAAGACTGGTCCGAAAAATCTGACAAGGATGAAGCAATCAAGTGTCGTCG 60
Query 61 ATCTGTTGCTTCTTCTGCTGGCGATCGCTCTTCTTGCGACGCCGGCGTTCTCCGATCTGG 120
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCTGTTACTTCTTCTCCTGGCGATCGCTCTTCTTGCGACGCCGGCGTTCTCCGATCTGG 120
Query 121 TTTTATCCAAAGTCGAACGTCGTATCGATGTGACTTCACAGATTGCTCGCGTTACTAAGA 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 TTTTATCCAAAGTCGAACGTCGTATCGATGTGACTTCACAGATTGCTCGTGTTACTAAGA 180
Query 181 CTCTTAAGGTCGTCAATTCTGGCTCTGAATCAATTTCTGAGTTTATTTTGACCTTCCCAA 240
| |||||||| || |||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct 181 CCCTTAAGGTTGTAAATTCTGGCTCTGAATCAGTTTCTGAGTTTGCTTTGACATTCCCAA 240
Query 241 AGTTTCTTGGGAACAACTTGGCTTATTTATCGGTTTC-CCATAGTGAGGGAAAGGGGAAA 299
|||||||||| ||||||||||||||| |||||||| | || |||||||||||||||||||
Sbjct 241 AGTTTCTTGGTAACAACTTGGCTTATCTATCGGTTGCTCC-TAGTGAGGGAAAGGGGAAA 299
Query 300 TCTAAACGTACGTTAGTCAATCTCTCTGTGAGAGAAGCTGATTC-GAAAGGAATACCCGA 358
|||||||| || ||||| |||||||||||||||||||||||| | |||||| |||| ||
Sbjct 300 TCTAAACGAACTTTAGTGAATCTCTCTGTGAGAGAAGCTGAT-CAGAAAGGTTTACCTGA 358
Query 359 TTCAATTAGTGTTTACTCTGTTACATTACCCAAATCACTCAGTAAAGGCGATACTTTGAC 418
|||||||||||||||||| ||| ||||||||||| |||| ||||||||||||||||||||
Sbjct 359 TTCAATTAGTGTTTACTCAGTTGCATTACCCAAACCACTGAGTAAAGGCGATACTTTGAC 418
Query 419 GTTGGAGGTGGTTGCTGCATTCACCAATGTACTTCAGCCATTTCCGGAGAAGATTACTCA 478
| ||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 419 GCTGGAGGTAGTTGCTGCATTCACCAATGTACTTCAGCCATTTCCTGAAAAGATAACTCA 478
Query 479 GGGTGAAATCCATCTTGTTATGCTCCAAGAAAGTGCACAGTATCTCTCTCCTTACGCGGT 538
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 479 GGGTGAAATCCATCTTGTTATGCTCCAAGAAAGCGCACAATATCTCTCTCCTTACGCGGT 538
Query 539 TGAGTCTCAGTCTTTGTCTATCAAACTACCCAATGCCAGAATCGAATCTTACACCAAATT 598
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 539 TGAGTCTCAGTCATTGTCTATCAAACTACCGAATGCCAGAATCGAATCTTACACCAAATT 598
Query 599 GGAGAATACAAAGCTCCAGGGATCAGAGCTTAAATATGGCCCATACAAGAATCTCCAGTC 658
||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 599 CGAGAATACAAAGCTCCAGGGATCAGAGCTCAAATATGGTCCTTACAAGAATCTCCAGTC 658
Query 659 GTATTCATACTCTCCCGTAGTTGTCCACTTTGAAAGCAAGGCTGCATTTGCTGTGGCTGA 718
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GTATTCATACTCTCCAATTGTTGTCCACTTTGAAAGCAAGGCTGCATTTGCTGTGGCTGA 718
Query 719 GAATCTTGTGCGAGAGATAGAAGTGTCTCATTGGGGGAATGTACAGGTCACGGAGCATTA 778
||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 719 GAAGCTTGTGCGAGAGATAGAAGTGTCTCATTGGGGGAATGTGCAGGTCACGGAGAATTA 778
Query 779 CAATGTTGTCCACCGAGGGGCTCAACTCAGGGGAGAGTTTTCAAGGTTAGACTTTCAAGC 838
||||||||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 779 CAATGTTGTCCACCGTGGGGCTCAACTCAAGGGCGAGTTTTCAAGGTTAGATTTTCAAGC 838
Query 839 CAGACCTAATCCCCGAGGAGCATCTGCCTTTAGGCATTTACTTGCTAGATTGCCCCCCAG 898
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 839 CAGACCTAATCCCCGTGGAGCATCTGCCTTTAGGCATTTACTTGCTAGATTACCCCCCAG 898
Query 899 AGCCCATTCCATATATTACAGGGATGATATTGGAAATATCTCCACGTCTGAGATGCAAAG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 899 AGCCCATTCCATATATTACAGGGATGATATTGGAAATATCTCCACGTCTGAGATGAAAAG 958
Query 959 TGATTCGAAAAAGACAGAGCTACTAATTGAGCCTAGGTTTCCTTTGTTTGGTGGGTGGAA 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGATTCGAAAAAGACAGAGCTACTAATTGAGCCTAGGTTTCCTTTGTTTGGTGGGTGGAA 1018
Query 1019 AACTTTTTTCACGATAGGTTATGGTTTGCCACTTAGCGACTTCTTGTTTGCTTCGGAAGG 1078
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1019 AACTTTTTTCACGATAGGTTATGGTTTGCCACTTACCGACTTCTTGTTTGCTTCGGAAGG 1078
Query 1079 AAAGCGATTCCTTAATATCTCCTTTGGCTCCCCTATTCTTGACCTTGTCACTGAAAAACT 1138
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1079 AAAGCGATTCCTTAATATCTCCTTTGGCTCCCCTATACTTGACCTTGTCACTGAAAAACT 1138
Query 1139 TATTGTACAGGTAGTTTTACCCGAGGGGTCAAAGGATATATCAGTTGCCACTCCATTCAC 1198
|||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| |
Sbjct 1139 TATTGTACAGGTGGTTTTACCTGAGGGGTCAAAGGATATATCAGTTACCACTCCATTCGC 1198
Query 1199 TGTCAAGCAGTCTCAAGAGATCAAATATTCACATTTAGATATAGCTGGTAGACCAGTTGT 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CGTCAAGCAGTCTCAAGAGATCAAATATTCACATTTAGATATAGCTGGTAGACCAGTTGT 1258
Query 1259 TGTGCTCGAAAAGAACAACGTTGTTCCAGATCACAATCAGCATGTCCAGGTCTACTATAA 1318
|||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 1259 TGTGCTCGAAAAGAACAACGTTGTCCCTGATCACAATCAGCATATCCAGGTCTACTATAA 1318
Query 1319 GTTCAGCAACATCAATCTGCTGAGTGAGCCATTGATGTTAATCTCTGGATTTTTCTTTTT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1319 GTTCAGCAACATCAATCTGCTGAGTGAGCCATTGATGTTAATCTCTGGATTTTTCATTTT 1378
Query 1379 GTTCATCACTTGCATCATATACACACGGGCTGACTTCTCAATCTCCAAGTCCTCTCCGAC 1438
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1379 GTTCATCACTTGCATCATATACACACGGGCTGACATCTCAATCTCCAAGTCCTCTCCGAG 1438
Query 1439 ATACTTGGCAAAACTTCAATGGGATGAGGTCCTAGCAACACTCCAGGAAGTCCAAAGCAT 1498
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TTATTTGGCGAAACTTCAATGGGATGAGGTCCTAGCAACACTCCAGGAAGTCCAAAGCAT 1498
Query 1499 CATCCAAAAATGCTTAGCTACACATGATAAGCTTGAAGCATCGCTGCGTGATCTCTCAAG 1558
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CGTCCAAAAATGCTTAGCCACACATGATAAGCTTGAAGCATCGCTGCGTGATCTCTCAAG 1558
Query 1559 AACCGGTGACATTCAAACCTGCAAAGCAGCTCGCAAATCCACTGACAGTTTACTGAAAGA 1618
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AACTGGTGACATTCAAACCTGCAAAGCAGCTCGCAAATCCACTGACAGTTTACTGAAAGA 1618
Query 1619 TTTTTCGAAAGAACTGAAACCATTGCTGGGTTTCTTACAGTCTTCCCCTAT-AGCCTCTC 1677
| ||||||||||||||||||| |||||||||||||||||||||| ||| || ||||||||
Sbjct 1619 TCTTTCGAAAGAACTGAAACCGTTGCTGGGTTTCTTACAGTCTTTCCC-ATCAGCCTCTC 1677
Query 1678 ACATATCTCCAAAGGTCGAGGAGCTAGTTGCGAAAGAGAAAGAACTTGAAGAGAAGTTAA 1737
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1678 ACATATCTCCAAAGGTCGAGGAGCTAGTTGTGAAAGAGAAAGAACTTCAAGAGAAGTTAA 1737
Query 1738 TGGCCAAACATACCACTGTTGTTGAAGGGTATGAAAAGAAATCCTCAGGGCGTGATATCG 1797
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1738 TGGCCAAACATACCACTGTTGTTGAAGGGTACGAAAAGAAATCCTCAGGGCGTGATATCG 1797
Query 1798 AAAACCGGATTGCTTCTCAGCAGCAAAAGATCATAGCTTTGAGGCAAGAAATTGAAGATC 1857
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 AAAACCGGATCGCTTCTCAGCAGCAAAAGATCATAGCTTTGAGGCAAGAAATTGAAGATC 1857
Query 1858 TTCTAGAATTCATTGATGAGATCTAGAAAAGTTAAATGTAGCAGATCCTCTTAAGCTTAA 1917
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1858 TTCTAGAATTCATTGATGAGATCTAGAAAAGTTAAATGTAGCAAATCCTCTTACGCTTAA 1917
Query 1918 ATACCAGACTTTTGAA-TGCACTACCTTTAGAAATTTTTTGTTCCTTAATGAGCAGTGTT 1976
|||||||||||||||| | |||| || ||||||| |||||||||| |||||||||||||
Sbjct 1918 ATACCAGACTTTTGAACT-CACTCCCATTAGAAAAATTTTGTTCCTCAATGAGCAGTGTT 1976
Query 1977 TATCAACTTTGAAAGACAGCTCTAGTTTCTCTGAGTTTAACAAATGAATCAAATTATCTT 2036
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1977 TATCAACTTTGAAAGACAGCTCTAGTTTCTCTGAGTTTAACAAATGAATCATATTATCTT 2036
> AT1G76390.1 | Symbols: | ARM repeat superfamily protein | chr1:28655399-28658711
FORWARD LENGTH=2856
Length=2856
Score = 226 bits (122), Expect = 7e-58
Identities = 143/153 (93%), Gaps = 2/153 (1%)
Strand=Plus/Minus
Query 1885 AAAGTTAAATGTAGCAGATCCTCTTAAGCTTAAATACCAGACTTTTGAA-TGCACTACCT 1943
|||||||||||||||| ||||||||| |||||||||||||||||||||| | |||| ||
Sbjct 2856 AAAGTTAAATGTAGCAAATCCTCTTACGCTTAAATACCAGACTTTTGAACT-CACTCCCA 2798
Query 1944 TTAGAAATTTTTTGTTCCTTAATGAGCAGTGTTTATCAACTTTGAAAGACAGCTCTAGTT 2003
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2797 TTAGAAAAATTTTGTTCCTCAATGAGCAGTGTTTATCAACTTTGAAAGACAGCTCTAGTT 2738
Query 2004 TCTCTGAGTTTAACAAATGAATCAAATTATCTT 2036
|||||||||||||||||||||||| ||||||||
Sbjct 2737 TCTCTGAGTTTAACAAATGAATCATATTATCTT 2705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100903095450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5