BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476797
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76405.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1072 0.0
> AT1G76405.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G20816.1);
Has 52 Blast hits to 52 proteins in 19 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:28661884-28663789
FORWARD LENGTH=730
Length=730
Score = 1072 bits (580), Expect = 0.0
Identities = 680/725 (94%), Gaps = 20/725 (3%)
Strand=Plus/Plus
Query 1 GCAGAGGATGATACAGTAATCGGAAGTGTGaaaaaaaCTAGGTGAGGTTTTGGTTTTG-- 58
|||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 1 GCAGAGGATGATACAGTAGTC-GAAGTGTG-CAAAAACTAGGTGAGGTTTTGGTTTTGTT 58
Query 59 G-CTCAGTGAGAATTTTCTA-G-G-------CGAGAAAATCTTTTGAGGAAAATGGAGAC 108
| ||||||||| |||||||| | | |||||||||| ||||||||||||||||||
Sbjct 59 GACTCAGTGAGGATTTTCTAGGCGATTTTCTCGAGAAAATCGTTTGAGGAAAATGGAGAC 118
Query 109 TTCTCTGAGGTATACCTGCAATTCCAAGTCTATGAAAATTCATGCCAAAGAGAAGGTTCC 168
|||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 119 TTCTATGAGGTATACCAGCAATTCCAAGTCTATGAAGATTCATGCCAAAGAGAAGGTTCC 178
Query 169 GGTGAACTCGAAAACCCATTTACAGCTTCATGGAGAGCTAGATACTGGAACTGGGGCCCC 228
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 179 GGTGAACTCAAAAACCCATTTACAGCTTCATGGAGAGTTAGATACTGGAACTGGGGCTCC 238
Query 229 GAGTTACTTTTGTGCAATGATTAGACACTTTTTTCCTGAGGCTTCAACAGGTCTTGGAGT 288
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 239 GAGTTACTTCTGTGCGATGATTAGACACTTTTTTCCTGAGGCTTCAACAGGCCTTGGGGT 298
Query 289 AGGATTGCATTATGATAAGCGCCAAAAGCTTCGGTGTCTTGTACGCGGaaaaaaaGAGTT 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGGATTGCATTATGATAAGCGCCAAAAGCTTCGGTGTCTTGTACGCGGAAAAAAAGAGTT 358
Query 349 TCCTGTAAGAGCTGATAAGCGCGTAACCTTTAATATTAAAGGGCGGTGTGATTTTGATCA 408
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 359 TCCTGTAAGAGCTGATAAGCGTGTAACCTTTAATATTAAAGGGCGGTGTGATATTGATCA 418
Query 409 AGACTTAAATCAGA-GAAACCCGAAAGGAGCTGCAGAATTTGCCTGGAACATAATGGATT 467
||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||||
Sbjct 419 GGACTTAAATCAGAAGAACCCC-AAAGGAGCAGCAGAATTTGCCTGGAACATAATGGATT 477
Query 468 TTAAGGAAGATCAGGATGTACGGATCAAAGTGGGCTACGAAATGTTTGATAAGGTCCCTT 527
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 478 TCAAGGAAGATCAGGATGTACGGATCAAAGTTGGCTACGAAATGTTTGATAAGGTCCCTT 537
Query 528 ATATGCAGATCAGAGAAAACAATTGGACTCTCAACGCAAACATGAAGGGAAAATGGAACT 587
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 538 ATATGCAGATTAGAGAAAACAATTGGACTCTCAACGCGAACATGAAGGGAAAATGGAACT 597
Query 588 TGCGGTATGACCTGTAGCTGCATTTTATATTCATCATCATCATCTGAGAAATGTATTGAT 647
|||||||||||||||| ||||||||| | |||| |||||||||||||||||||||||||
Sbjct 598 TGCGGTATGACCTGTAACTGCATTTT-T-TTCA--ATCATCATCTGAGAAATGTATTGAT 653
Query 648 ACCACTACTGATGAACACATTTTAATTCTACCAATTAATCAAATTCAGAGATCTTCCAAA 707
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 ACCACTGCTGATGAACACATTTTAATTCTACCAATTAATCAAATTCAGAGATCTTCCAAA 713
Query 708 TCATC 712
|||||
Sbjct 714 TCATC 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34510858989
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5