BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476799
Length=1107
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76420.1 | Symbols: CUC3, NAC368, ANAC031 | NAC (No Apical M... 1698 0.0
> AT1G76420.1 | Symbols: CUC3, NAC368, ANAC031 | NAC (No Apical
Meristem) domain transcriptional regulator superfamily protein
| chr1:28672029-28673934 REVERSE LENGTH=1104
Length=1104
Score = 1698 bits (919), Expect = 0.0
Identities = 1053/1115 (94%), Gaps = 19/1115 (2%)
Strand=Plus/Plus
Query 1 ACTTCCCATCACCTTTTGTATCATTGCTCTCTTTGTTCTTCCTTTTGGTGTCTCTTCAGT 60
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1 ACTTCCCATCACCTTTTGTATCATTGCTATCTTTGTTCTTCCTTCTGGTGTCTCTTCAGT 60
Query 61 GTAAC-AAAAGCCTCTTTTTCGGTTATAATAAGTAAAAAGATGATGCTTGCGGTGGAAGA 119
||||| ||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||
Sbjct 61 GTAACAAAAAGTCTCTTTTTCAGTTATATTAAGT-AAAAGATGATGCTTGCGGTGGAAGA 119
Query 120 TGTGTTAAGCGAACTCGCCGGAGAAGAAAGAAACGAGAGAGGATTGCCACCTGGCTTCCG 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TGTGTTAAGCGAACTCGCCGGAGAAGAAAGGAACGAGAGAGGATTGCCACCTGGCTTCCG 179
Query 180 GTTTCACCCGACGGACGAAGAGCTCATTACCTTCTACTTAGCTTCCAAAATCTTCCATGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTTTCACCCGACGGACGAAGAGCTCATTACCTTCTACTTAGCTTCCAAAATCTTCCATGG 239
Query 240 AGGACTCTCCGGCATTCACATTTCCGAAGTTGATCTTAACCGTTGTGAACCTTGGGAACT 299
|| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 240 TGGTCTCTCCGGCATTCACATTTCCGAAGTTGATCTCAACCGCTGTGAACCTTGGGAGCT 299
Query 300 ACCCGAAATGGCGAAGATGGGAGAGAAAGAGTGGTACTTTTATAGTCTAAGGGATAGGAA 359
||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 300 ACCAGAAATGGCGAAGATGGGAGAGAGAGAGTGGTACTTTTATAGTCTAAGGGACAGGAA 359
Query 360 ATATCCGACGGGTTTGAGGACTAACAGAGCAACTACTGCTGGATATTGGAAAGCTACCGG 419
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 ATATCCGACAGGTTTGAGGACTAACAGAGCAACTACTGCTGGATACTGGAAAGCTACCGG 419
Query 420 AAAAGATAAGGAGGTCTTCGCCGGCGGCGGAGGACAACTTGTTGGGATGAAGAAGACGTT 479
||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||
Sbjct 420 CAAAGATAAGGAAGTCTTCTCCGGCGGAGGAGGACAGCTTGTTGGGATGAAGAAGACGTT 479
Query 480 GGTGTTCTACAAAGGTAGGGCTCCACGTGGCCTCAAGACTAAGTGGGTCATGCATGAGTA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGTGTTCTACAAAGGTAGGGCTCCACGTGGCCTCAAGACTAAGTGGGTCATGCATGAGTA 539
Query 540 TCGCCTCGAAACCGACCATTCACACCGCCACACGTGTAAGGAGGAATGGGTGATTTGCAG 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCGCCTCGAAAACGACCATTCACACCGCCACACGTGTAAGGAGGAATGGGTGATTTGCAG 599
Query 600 AGTGTTCAATAAAACAGGAGATAGAAAAAATGTTGGA--A-TCCATAACCAAATCAGCTA 656
||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||
Sbjct 600 AGTGTTCAATAAAACAGGAGACAGAAAAAATGTTGGATTAATCCATAACCAAATCAGCTA 659
Query 657 CCTTCATAACCATTCACTCTCAGCAACACATCATCATCATCATGAAGCCTTACCTTTGCT 716
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 CCTTCATAACCATTCACTCTCAACAACACATCATCATCATCATGAAGCCTTACCTTTGCT 719
Query 717 TTTAGAACCTTCCAACAAAACCCTAACCAACTTCCCATCACTACTCTACGATGATTCC-C 775
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 720 TATAGAACCTTCCAACAAAACCCTAACCAACTTCCCATCACTACTCTACGATGAT-CCAC 778
Query 776 ACCAAATTTACAATAATAAC--CT-CCTACATGGATCATCAGGCCACAACATCGACGAGC 832
|||||| |||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 779 ACCAAAACTACAATAATAACAACTTCCTTCATGGATCATCAGGCCACAACATCGACGAGC 838
Query 833 TCAAAGCCTTAATCAACCCAGTCGTCTCTCAGCTCAACGGAATCATCTTTTCGCCGGGGA 892
||||||||||||||||||| |||||||||||||||||||| ||||||||| | | ||||
Sbjct 839 TCAAAGCCTTAATCAACCCTGTCGTCTCTCAGCTCAACGGTATCATCTTTCCTTCAGGGA 898
Query 893 ACAACAACAACGATGAAGACGACTTCGACTTTAACCTCGGCGTGAAGTCAGAGCCGTCTT 952
||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 899 ACAACAACAACGACGAAGACGACTTCGACTTTAACCTCGGCGTGAAAACAGAGCAGTCTT 958
Query 953 CCAACGGTGGTAATAATAACGAACTTGACGTACGAGATTACTTGGAGAACCCTCTGTTTC 1012
| |||||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 959 CGAACGGT---AA------CGAAATTGACGTACGAGATTACTTGGAGAACCCTCTGTTTC 1009
Query 1013 AGGAAGCGAGTTATGGTCTTTTGGGTCTTTCGTCTTCTCCTGGACCTCTTCACATGCTAC 1072
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 1010 AGGAAGCGAGTTATGGTCTGTTGGGTTTTTCGTCTTCTCCTGGACCTCTTCACATGCTAC 1069
Query 1073 TAGATTCTCCATGTCCTTTAGGTTTCCAGCTGTAG 1107
|||||||||||||||||||||| ||||||||||||
Sbjct 1070 TAGATTCTCCATGTCCTTTAGGATTCCAGCTGTAG 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54266789145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5