BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476800
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76430.1 | Symbols: PHT1;9 | phosphate transporter 1;9 | chr... 2427 0.0
AT1G20860.1 | Symbols: PHT1;8 | phosphate transporter 1;8 | chr... 889 0.0
> AT1G76430.1 | Symbols: PHT1;9 | phosphate transporter 1;9 | chr1:28678935-28681995
REVERSE LENGTH=1900
Length=1900
Score = 2427 bits (1314), Expect = 0.0
Identities = 1554/1669 (93%), Gaps = 19/1669 (1%)
Strand=Plus/Plus
Query 28 TATTGTTCTCATTTTTCTGTATCTTGAAAAAATCCTT---AAATCGACGAAACGATGCCG 84
||||||||||| || || ||||||||||||||| ||| ||||||||||||||||||||
Sbjct 69 TATTGTTCTCA-TTCTCCGTATCTTGAAAAAATTCTTAAAAAATCGACGAAACGATGCCG 127
Query 85 GCGTTAAGAGTGTTATCGGCTTTAGATGCGGCGAGGATACAGTGGTACCATTTCAAAGCC 144
| |||||| | |||||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 128 GAGTTAAGTTTATTATCGGCGTTAGACGCAGCGAGGATACAGTGGTACCATTTCAAAGCG 187
Query 145 ATAATAGTCGCCGGCATGGGACTTTTCACCGACGCTTACGATCTTTTCTGTATAGCTCCG 204
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 188 ATAATAGTCGCCGGAATGGGACTTTTCACCGACGCATACGATCTTTTCTGTATAGCTCCG 247
Query 205 ATCATGAAGATGATAAGTCAAATCTATTACCACAAAGACTCAATCGGAACCGCTATTCTC 264
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 248 ATCATGAAAATGATAAGTCAAATATATTACCACAAAGACTCAATCGGAACCGCTCTTCTC 307
Query 265 TCAACTTCTTACGCAATCGCTCTTCTTGGCACCGCTTTAGGTCAGCTCATCTTTGGTTAC 324
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 308 TCAACTTCTTACGCAATCGCTCTTCTTGGCACCGCGTTAGGTCAGCTCATCTTTGGTTAC 367
Query 325 TTAGGCGACCGAATCGGACGTCGTAAAGTCTATGGACTTTGTCTCTTAATCATGATTTTT 384
||||| |||||| |||||||||||||||||||||||||| ||||||| |||||| | |||
Sbjct 368 TTAGGTGACCGAGTCGGACGTCGTAAAGTCTATGGACTTAGTCTCTTGATCATGGTGTTT 427
Query 385 AGCTCTTTTGGTTGTGGCTTCTCTGTTTGCACGACTCGGCGTTCTTGCGTTTTGGTTAGT 444
||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 428 AGCTCCTTTGGTTGTGGCTTCTCTGTTTGCACGACTCGACGTTCTTGTGTTATGGTTAGT 487
Query 445 CTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATCGGTGGAGATTATCCTCTTTCCGCC 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 488 CTTGGATTCTTTAGATTCGTTCTTGGACTTGGAATCGGTGGAGATTATCCTCTTTCGGCC 547
Query 505 ACGATTATGTCGGAGTTCGCTAATAAAAGGACGCGTGGAGCTTTTATAGCTGCCGTGTTC 564
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 548 ACGATTATGTCGGAGTTTGCTAACAAAAGGACGCGTGGAGCTTTTATCGCTGCCGTGTTC 607
Query 565 TCGATGCAAGGGTTAGGGATTTTGATGAGCTCTGCTGTGACTATGGTTGTGTG-TGTGGC 623
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 608 TCGATGCAAGGGTTAGGGATTTTGATGAGCTCTGCTGTGACTATGGTTGTGTGCT-TGGC 666
Query 624 GTTTAAGAACGCAGCCGGAGAGGGGAGCTT-GGAGAAGACGAACGTGGCGGGGTTAGAAA 682
||| |||||||| | | ||||||||| || ||||||||||||||||||||||||||| |
Sbjct 667 GTTCAAGAACGCTG--G-AGAGGGGAG-TTCGGAGAAGACGAACGTGGCGGGGTTAGAGA 722
Query 683 CTGTGGCTCCCCCGGAATCGGATATAGCGTGGAGGTTGATTCTTATGATCGGAGCTCTTC 742
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 CTTTGGCTCCGCCGGAATCGGATATAGCGTGGAGGTTGATTCTTATGATCGGAGCTCTTC 782
Query 743 CCGCTGCGTTAACGTTTTACTGGCGAATGCTCATGCCTGAAACCGCCAGATACACAGCAT 802
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CCGCCGCGTTAACGTTTTACTGGCGAATGCTCATGCCTGAAACCGCCAGATACACAGCAT 842
Query 803 TGGTGGAGAACAATGTAGTCGAAGCAGCAAAAGACATGCAAAGAGTCATGACCGTATCCA 862
|||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct 843 TGGTTGAGAACAATGTAGTCCAAGCAGCAAAAGACATGCAAAGAGTCATGTCCGTATCAA 902
Query 863 TGATATCTCAAATAGCCGAAGATTCATCATCGGAGCTAGAACAACCACCGACTTCCTCCT 922
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 903 TGATATCTCAAATAACCGAAGATTCATCATCGGAGCTAGAACAACCACCGTCTTCTTCCT 962
Query 923 -A--CAAACTCTTCTCTCGCCGTTTCCTCAACCTTCACGGCCGAGACCTCTTCGCAGCCT 979
| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 963 CATACAAACTCTTCTCTCGCCGTTTCCTCAGTCTCCACGGTCGAGACCTCTTCGCAGCCT 1022
Query 980 CAGCTAATTGGTTCCTAGTCGACGTCGTCTTCTATACAAGCAACCTCCTCCTCTCTCAAA 1039
|||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1023 CAGCCAATTGGTTCCTAGTGGACGTCGTCTTCTATACAAGCAATCTCCTTCTCTCTCAAA 1082
Query 1040 TCTTCAATTTATCCAACAAACCTCC-CAATTCCACAAACGTCTACGAGTCCGCCTTCGAA 1098
|||| || || ||||||||||| || ||| ||||||||||||||||| || ||||| |||
Sbjct 1083 TCTTTAACTTCTCCAACAAACC-CCTCAACTCCACAAACGTCTACGACTCTGCCTTTGAA 1141
Query 1099 GTATCTAAGCTCGCAGCCATTGTAGCCGCTTGCTCCACCATCCCCGGTTACTGGTTCACC 1158
||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1142 GTAGCTAAGCTTGCAGCCATTGTAGCCGCTTGCTCCACCATCCCTGGTTACTGGTTCACG 1201
Query 1159 GTTTATTTCATCGATAAAATCGGTCGAGTCAAGATTCAGATGATGGGTTTTTTCCTTATG 1218
|| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1202 GTCTATTTCATCGATAAAATCGGTAGAGTCAAGATTCAGATGATGGGGTTTTTCCTTATG 1261
Query 1219 GCCGTTGTTTACTTAGTCGCTGGGATTCCATACAGTTGGTATTGGTCTAAGCATGAGAAG 1278
|| || ||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1262 GCGGTCGTTTACTTAGTCGCTGGGATTCCGTATAGTTGGTATTGGTCTAAGCATGAGAAG 1321
Query 1279 ACTAAAAAAGGCTTTATGGTTCTCTACGGATTGATTTTCTTCTTTAGCAACTTTGGTCCT 1338
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1322 ACTAATAAAGGCTTTATGGTTCTCTACGGATTGATTTTCTTCTTTAGCAACTTTGGCCCT 1381
Query 1339 AACACGACAACGTTTATTATCCCGGCGGAGCTTTTTCCGGCAAGGTTTAGGTCCACATGT 1398
|||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1382 AACACGACGACGTTTATCATCCCGGCGGAGCTTTTTCCGGCTAGGTTTAGGTCCACGTGT 1441
Query 1399 CACGGGATATCTGGAGCTGCCGGGAAGTTTGGTGCGATTGTTGGCACTGTTGGTTTCTTG 1458
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1442 CACGGGATATCTGGAGCTGCAGGGAAGTTTGGTGCGATTGTTGGCACTGTCGGTTTCTTG 1501
Query 1459 TGGGCCACGAAACACCATGAAGAGGACGGTTTTCCAGACGTGAAACGTGTGAGAATCGCG 1518
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1502 TGGGCCACGAGACACCATGAAGAGGACGGTTTTCCAGATGTGAAACGTGTGAGAATCGCG 1561
Query 1519 TTTTTGATCCTTGGCGGCGTTTGTATAGCTGGAATGATCGTTACGTATTTCTTCACTCGT 1578
|||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| |||
Sbjct 1562 TTTTTGATCCTTGGCGGCGTTTGTATCGCGGGAATGATCGTAACGTATTTGTTCACGCGT 1621
Query 1579 GAAACGATGGGAAGATCATTAGAAGAGAACGAAGACAAGATTGGTACAACGTCAGGA--- 1635
||||| ||||||||||| |||||||||||||||||| |||||| | | ||||||| |
Sbjct 1622 GAAACTATGGGAAGATCGTTAGAAGAGAACGAAGACGAGATTGTTTCCACGTCAGCAGGG 1681
Query 1636 TCGTCTTCTGCGAATGAGTTACTTCCGAGACAATACTGATTTCGAGATC 1684
|||||| |||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1682 TCGTCTCCTGCGAATGAGTTACTTCGGAGACAATACTAATTTCAAGATC 1730
> AT1G20860.1 | Symbols: PHT1;8 | phosphate transporter 1;8 | chr1:7254007-7258677
REVERSE LENGTH=1605
Length=1605
Score = 889 bits (481), Expect = 0.0
Identities = 1195/1528 (78%), Gaps = 95/1528 (6%)
Strand=Plus/Plus
Query 123 ACAGTGGTACCATTTCAAAGCCATAATAGTCGCCGGCATGGGACTTTTCACCGACGCTTA 182
||| ||||||||||||||||| || ||||| || || ||||| || ||||||||||| ||
Sbjct 42 ACAATGGTACCATTTCAAAGCGATCATAGTAGCGGGAATGGGTCTATTCACCGACGCATA 101
Query 183 CGATCTTTTCTGTATAGCTCCGATCATGAAGATGATAAGTCAAATCTATTACCACAAAGA 242
|||||||||||| ||||| ||| ||||||| ||||| ||||| | |||||| || ||
Sbjct 102 CGATCTTTTCTGCATAGCACCGGTCATGAAAATGATTAGTCATGTTTATTACAACGGTGA 161
Query 243 CTCAATCGGAAC-C-GCTATTCTCTCAACTTCTTACGCAATCGCTCTT-CTTGGCACCGC 299
||||||| ||| | || |||| |||||||||||||| |||||| || || ||||| ||
Sbjct 162 CTCAATC--AACACAGCCGTTCTTTCAACTTCTTACGCCATCGCT-TTACTCGGCACAGC 218
Query 300 TTTAGGTCAGCTCA-TCTTTGGTTACTTAGGCGACCGAATCGGACGTCGTAAAGTCTATG 358
||||| || | |||| |||||| | || |||||| |||| ||||| |||||| |
Sbjct 219 CACGGGTCAACT-AGTCTTCGGTTACCTCGGTGACCGAGTCGGTCGTCGCCGAGTCTACG 277
Query 359 GACTTTGTCT-CTTAATCATGATTTTTAGCTCTTTTGGTTGTGGCTTCTCTGTTTGCACG 417
|||||||| | || || ||||| ||||||| |||||||||||||| || || |||||
Sbjct 278 GACTTTGTTTGATT-ATTATGATCCTTAGCTCCTTTGGTTGTGGCTTTTCCGTGTGCACC 336
Query 418 ACTCGGCGTTCTTGCGTTTTGGTTAGTCTTGGATTCTTT-AGATTCGTTCTTGGACTT-G 475
||||| || ||||| ||| ||||||| || || || ||| | ||| ||||||| || |
Sbjct 337 ACTCGTCGGTCTTGTGTTATGGTTAGCCTCGG-TTTTTTCCGGTTCTTTCTTGG-TTTAG 394
Query 476 GAATCGGTGGAGATTATCCTCTTTCCGCCACGATTATGTCGGAGTTCGCTAATAAAAGGA 535
| |||||||| ||||| || || || || || |||||||||||||| |||||||| ||||
Sbjct 395 GTATCGGTGGTGATTACCCGCTCTCGGCTACCATTATGTCGGAGTTTGCTAATAAGAGGA 454
Query 536 CGCGTGGAGCTTTTATAGCTGCCGTGTTCTCGATGCAAGGGTTAGGGATTTTGATGAGCT 595
| ||||| || ||||| ||||| ||||| |||||||||||||| ||||||||| | ||||
Sbjct 455 CACGTGGCGCGTTTATCGCTGCGGTGTTTTCGATGCAAGGGTTGGGGATTTTGGTTAGCT 514
Query 596 CTGCTGTGACTATGGTTGTGTGTGTGGCGTTTAAGAACGCAGCCGGAGAGGGGAGCTTGG 655
|||| ||||| |||| ||| || |||||||||||| | | || | | || | | ||||
Sbjct 515 CTGCCGTGACCATGGCTGTTTGCGTGGCGTTTAAG-A-GAAG--TG-GCGGTG-GTTTGG 568
Query 656 AGAAGACGAACGTGGCGGGGTTAGAAACTGTGGCTCCCCCGGAATCGGA-TATAGCGTGG 714
|| | | | | || | | | |||||| ||||| | || | | || |||
Sbjct 569 AG--G-TGGA--T-GC---G---G---C---GGCTCCGACGGAAGCTGACT-TGGCCTGG 609
Query 715 AG-GTTGATTCTTATGATCGGAGCTCTTCCCGCTGCGTTAACGTTTTACTGGCGAATGCT 773
|| || || ||||||||||| |||||||| ||||| || ||||| || ||||||||| |
Sbjct 610 AGACTT-ATACTTATGATCGGTGCTCTTCCTGCTGCATTGACGTTCTATTGGCGAATGTT 668
Query 774 CATGCCTGAAACCGCCAGATACACAGCA-TTGGTGGAGAACAATGTAGTCGAAGCAGCAA 832
|||||||||||||| |||||||||||| || || || |||||| | ||| |||||||||
Sbjct 669 GATGCCTGAAACCGCAAGATACACAGCACTT-GTAGAAAACAATATCGTCCAAGCAGCAA 727
Query 833 AAGACATGCAAAGAGTCATGACC-GTATCCATGATATCTCAAATAGCCGAAGATTCATC- 890
|||||||||||||||||||| | | ||| | ||||||| | | |||| || |
Sbjct 728 AAGACATGCAAAGAGTCATGTCAAG-ATC--TCATATCTCCGA---C-GAAGC--CA-CG 777
Query 891 ATCGGAGCTAGAACAACCACCGACTTC-C-T-CCTACAAACTCTTCTCTCGCCGTTTCCT 947
| |||| | | | || ||| | | | | |||||||||||||||| ||| | ||| |
Sbjct 778 A-CGGATCCACCTCCTCCTCCGCCGCCACCTTCCTACAAACTCTTCTCCCGCTGCTTCTT 836
Query 948 CAACCTTCACGGCCGAGACCTCTTCGCAGCCTCAGCTAATTGGTTCCTAGTCGACGTCGT 1007
| ||| || || || ||||||||||||||||| ||||||||||||||| ||| | ||
Sbjct 837 CCGCCTCCATGGTCGCGACCTCTTCGCAGCCTCCTTTAATTGGTTCCTAGTAGACATTGT 896
Query 1008 CTTCTATACAAGCAACCTCCTCCTCTCTCAAATCTTCAAT--TTA-TCCAACAAACCTCC 1064
|||||| ||||||||||||||||| || || ||||||| | ||| ||||| |||||| |
Sbjct 897 CTTCTACACAAGCAACCTCCTCCTGTCCCATATCTTCAGTCATTACTCCAAGAAACCTTC 956
Query 1065 CAATTCCACAAA-CGTCTACGA-GTCCGCCTTCGAAGTATCT-AAGCTCGCAGCCATTGT 1121
|| | | | ||| ||||||||| | | ||||| ||||| | || | | |||||| |
Sbjct 957 CACTGC-AGAAAACGTCTACGACG-CAGCCTTTGAAGTGGCGGAAT-TAGGAGCCATCAT 1013
Query 1122 AGCCGCTTGCTCCACCATCCCCGGTTACTGGTTCACCGTTTATTTCATCGATAAAATCGG 1181
|| |||||||||||||| |||||||| |||||||| ||||| |||||||| || || ||
Sbjct 1014 CGCTGCTTGCTCCACCATTCCCGGTTATTGGTTCACAGTTTACTTCATCGACAAGATAGG 1073
Query 1182 TCGAGTCAAGATTCAGATGATGGGTTTTTTCCTT-ATGGCCGTTGTTTACTTAGTCGCTG 1240
||| ||||| || ||||| ||||| |||||| || ||||||||| |||| ||||||||||
Sbjct 1074 TCGTGTCAAAATCCAGATTATGGGGTTTTTC-TTCATGGCCGTTATTTATTTAGTCGCTG 1132
Query 1241 GGATTCCATACAGTTGGTATTGGTCTAAGCATGAGAAGACTAAAAAAGGCTTTATGGTTC 1300
| ||||| ||||||||||||||||| ||||| ||| | | ||| |||||||| |||||||
Sbjct 1133 GTATTCCGTACAGTTGGTATTGGTCAAAGCACGAGCATAATAATAAAGGCTTCATGGTTC 1192
Query 1301 TCTACGGATTGATTTTCTTCTTTAGCAACTTTGGTCCTAACACGACAACGTTTATTAT-C 1359
||||||| ||| ||||||||||| |||| |||||||| ||||| ||||| |||||||| |
Sbjct 1193 TCTACGGTTTGGTTTTCTTCTTTTGCAATTTTGGTCCCAACACTACAACTTTTATTATTC 1252
Query 1360 CCGGCGGAGCTTTTTCCGGCAAGGTTTAGGTCCACATGTCACGGGATATCTGGAGCTGCC 1419
||| | |||| ||| ||||| ||||||||||| || ||||||||||| ||||| || ||
Sbjct 1253 CCG-CAGAGCATTTCCCGGCTAGGTTTAGGTCTACTTGTCACGGGATCTCTGGTGCCGC- 1310
Query 1420 GGG-AAGTTTGGTGCGATTGTTGGCACTGTTGGTTTCTTGTGGGCCAC---GAA-AC--A 1472
||| ||| |||| || ||||| ||||||||||| ||||||||||| || ||| | |
Sbjct 1311 GGGTAAGCTTGGGGCTATTGTGGGCACTGTTGGGTTCTTGTGGGCTACCAAGAAGATGGA 1370
Query 1473 C--C-ATGA-AGAGGACG-G-TTT-TCCAGACGTGAAAC-GTGTGAGAATCGCGTTT-TT 1523
| |||| | | || | ||| ||| || || |||| || ||||||| || ||| ||
Sbjct 1371 AAGCGATGATAAAA-ACCAGATTTATCCCGAAGT-AAACCGTATGAGAATTGC-TTTCTT 1427
Query 1524 GATCCTTGGCGGCGTTTGTATAGCTGGAATGATCGTTACGTATTTCTTCACTCGTG-AAA 1582
||| ||||| |||||||| || |||||||| | || |||||||||||||| | | |||
Sbjct 1428 GATTCTTGGTGGCGTTTGCATTGCTGGAATCTTGGTGACGTATTTCTTCAC-CAAGGAAA 1486
Query 1583 CGATGGGAAGATCATTAGAAGAGAACGA 1610
| ||||||||||| ||||| ||||||||
Sbjct 1487 CTATGGGAAGATCGTTAGAGGAGAACGA 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86495539035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5