BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476801
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76440.1 | Symbols: | HSP20-like chaperones superfamily pro... 747 0.0
> AT1G76440.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:28682147-28683750 REVERSE LENGTH=779
Length=779
Score = 747 bits (404), Expect = 0.0
Identities = 519/570 (91%), Gaps = 26/570 (5%)
Strand=Plus/Plus
Query 1 GACGGTCACGTTGTTCCTCGAAGCTTCGCAGTCAACACCATCATCGGAACCTACCGGATT 60
|||||||||| |||||| ||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 11 GACGGTCACGCTGTTCCACGAAGCTTCGCTGTCAACACCATCATCGGAACTTACCGGAGT 70
Query 61 TCGCTACGGTAGGTTTGGATTCTATCTCTTGGGGAAAAAACACAAGAGGTAATCAGACAA 120
||| |||||||||||||||||||||||||| | ||||||| || ||| || | ||||
Sbjct 71 TCGTTACGGTAGGTTTGGATTCTATCTCTT-GTGAAAAAA-AC-AGA---AA-C--ACAA 121
Query 121 AGCTACACCATGAACACTGAGAATAATCAG------ACTACTCACTCGAAAGTGATCTCA 174
|| |||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 122 AG-------ATGAACGCTGAGAATAATCAGACTACTACTACTCACTCGAAAGTGATCTCA 174
Query 175 CATGTATTCTTCACTGGTACTGCTAAGCAAGGCTCTGCTGGGCCACCCATTGGTCTTGTC 234
|||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 175 CATGTATTCTGCACTGGTACTGCTAAGCTAGGCTCTGTTGGGCCACCCATTGGTCTTGTT 234
Query 235 GATATTGGCGTCAGCGAAGTTGCTTACATCTTCAGAGTCTCTCTCCCTGGCATTGAGAAA 294
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 235 GATATTGGCGTCAGCGAAGTTGCTTACATCTTCCGAGTCTCTCTTCCTGGCATTGAGAAA 294
Query 295 AATCAAGATAAGATCAAATGTGAAATTCAGAGGGAGGGAAGAGTTTGCATCCAAGGAGT- 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 295 AATCAAGATAAGATCAAATGTGAAATTCAGAGGGAGGGGAGAGTTTGCATCCAAGGAGTT 354
Query 354 AGTACCTGAGATTGCGATTCCAAGTGACACGGGATGCTTATACAGAATGCAGGTGCAACA 413
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 355 A-TACCTGAGATTGCGATTCCAAGTGACACGGGATGCTTATACAGAATGCAAGTGCAACA 413
Query 414 GCTCTGCCCGCCTGGTCCATTCTCAATCACGTTTAATCTTCCAGGACAAGTGGATCCTCG 473
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 414 GCTCTGTCCGCCTGGTCCATTCTCAATCACGTTTAATCTTCCGGGACAAGTGGATCCTCG 473
Query 474 CTTGTTTTCTCCAACATTT-AGACCTGATGGGATCTTTGAAGTTGTTGTCGTCAAGCTCG 532
|||||||||||| | |||| ||| ||||||||||||||||||| || || ||||||||||
Sbjct 474 CTTGTTTTCTCCTA-ATTTTAGATCTGATGGGATCTTTGAAGTCGTCGTAGTCAAGCTCG 532
Query 533 GAGTACGCATCCCAACTTCTTAGTTCCGGT 562
|||| |||||||||||||| ||||||||||
Sbjct 533 GAGTGCGCATCCCAACTTCATAGTTCCGGT 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5