BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476802
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76450.1 | Symbols: | Photosystem II reaction center PsbP f... 1290 0.0
> AT1G76450.1 | Symbols: | Photosystem II reaction center PsbP
family protein | chr1:28684551-28686244 FORWARD LENGTH=946
Length=946
Score = 1290 bits (698), Expect = 0.0
Identities = 772/808 (96%), Gaps = 4/808 (0%)
Strand=Plus/Plus
Query 1 TCCAGAAGATGTTCATCAATTCCTGTAGCAATCTCTGCTCTAGACAGCTCCAACGAGGAA 60
||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||
Sbjct 137 TCCAGAAGATGTTCATCAATTTCTGCGGCAATCTCTGTTCTTGACAGCTCCAACGAGGAA 196
Query 61 CAACATCGAATTTCGTCTAGAGATCATGTGGGGATTAAAAGAAGACAAGCCATGTTACAG 120
||||||||||||||||||||||||||||| ||||| || |||||| | | ||||||||||
Sbjct 197 CAACATCGAATTTCGTCTAGAGATCATGTTGGGATGAAGAGAAGAGACGTCATGTTACAG 256
Query 121 ATAGCTTCCTCTGTTTTCTTCCTTCCATTGGCCGTTTCACCTGCATTTGCAGAGACAAAT 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 257 ATAGCTTCCTCTGTTTTCTTCCTTCCATTGGCCATTTCACCTGCATTTGCAGAGACAAAT 316
Query 181 GCATCAGAAGCTTTCCGTGTGTACACAGATGAAGCGAACAAATTCGAGATATCAATCCCA 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 317 GCATCAGAAGCTTTCCGTGTGTACACAGATGAAACGAACAAATTCGAGATATCAATCCCA 376
Query 241 CAAGAAGATTGGCAAGTCGGGCAAGCAGAACCTAATGGATTCAAGTCAATCACAGCTTTT 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 C---AAGATTGGCAAGTCGGGCAAGCAGAACCTAATGGATTCAAGTCAATCACAGCTTTT 433
Query 301 TACCCTCGAGAAACTTCAACTTCCAATGTGAGCATAGCGATCACTGGACTAGGTCCGGAC 360
||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 434 TACCCACAAGAAACTTCAACTTCCAATGTGAGTATAGCGATCACTGGACTAGGTCCAGAC 493
Query 361 TTCACCAGGATGGAATCTTTTGGAAAGGTCGAAGCTTTCGCTGAAACACTGGTCAGTGGA 420
||||||||||||||||| || |||||||||||||||||||| |||||| |||||||||||
Sbjct 494 TTCACCAGGATGGAATCATTCGGAAAGGTCGAAGCTTTCGCCGAAACATTGGTCAGTGGA 553
Query 421 TTGGATAGAAGCTGGCAAAAACCAGCAGGAGTGACTGCAAAGCTAATCGATAGCAGATCT 480
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 554 TTGGATAGAAGCTGGCAAAAACCAGTAGGAGTGACTGCAAAGCTAATCGATAGCAGAGCT 613
Query 481 TCCAAGGGATTCTATTACATCGAGTACACCTTACAAAACCCTGGAGAAGCTCGCAAGCAT 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TCTAAGGGATTCTATTACATCGAGTACACCTTACAAAACCCTGGAGAAGCTCGCAAGCAT 673
Query 541 TTGTACTCTGCAATTGGAATGGCAACAAACGGTTGGTACAACCGCTTATACACTGTCACA 600
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 674 TTGTACTCTGCAATTGGAATGGCAACAAACGGATGGTACAACCGTTTATACACTGTCACA 733
Query 601 GGACAGTTTACAGATGAAGAATCTGCTGAACAAAGCTCCAAGATCCAAAAGACAGTCAAG 660
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 734 GGACAGTTTACAGATGAAGAATCTGCTGAACAAAGCTCTAAGATCCAGAAGACAGTCAAG 793
Query 661 TCTTTCAGATTCATCTGAGAATGTCATTCATATCTATCAGCGGAACTAAATTATAGAATT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TCTTTCAGATTCATCTGAGAATGTCATTCATATCTATCAGCGGAACTAAATTATAGAATT 853
Query 721 TATCAAGCAATTTGTTTACTGAACAATCACTTTTTT-CAATGAAATTCTGAGAAAAGAGC 779
||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 854 GATCAAACAATTTGTTTACTGAACAATTACTTTTTTGCAATGAAATTCTGAGAAAAGAGC 913
Query 780 CAACTCCATACTTTGAAGTAAGCTTCAG 807
| ||||||||||||||||||||||||||
Sbjct 914 CTACTCCATACTTTGAAGTAAGCTTCAG 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39283102954
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5