BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476803
Length=2076
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 2689 0.0
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 669 0.0
> AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686181-28689121 REVERSE LENGTH=2123
Length=2123
Score = 2689 bits (1456), Expect = 0.0
Identities = 1838/2008 (92%), Gaps = 83/2008 (4%)
Strand=Plus/Plus
Query 98 ttcgaccctgtagcttcgtttttgtttaTAATTTCTTGTGATCCTTTCTTTAGTACAAAA 157
|||||||||||||||| ||| ||||||||||||||||||||| | ||| |||||||||
Sbjct 162 TTCGACCCTGTAGCTTAGTTGTTGTTTATAATTTCTTGTGAT-CATTC-ACAGTACAAAA 219
Query 158 ACCCTAATTTCACCCACCGActtcttcttcttcttcttcttctctctGTGGCCCATCCTT 217
| |||| |||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct 220 AAACTAA-TTCACCCACCGACTTCTTCTTCTTCTTC-TC-T-TCTCTGTGGCCCATCCTT 275
Query 218 AAACCCACACTGCTTTTGCTTTTCCttttttttttCCGGGAAATTTGATCTCTTTACCTT 277
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 276 AAACCCACACTGCTTTTGCTTTTCC-TTTTTTTTTCCGGGAAATTTGATCTCTTTACCTT 334
Query 278 TCGTCATTATTAGTAGGGAATGATCTTTTAG---GTATTTTGTTTCCCCCAAATCTCACT 334
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 335 TCGTCATTATTAGTAGGGAATGATCTTTTAGTTTTTTTTTTGTTTCCCCCAAATCTCACT 394
Query 335 TTTTCTCCCTTCTTCTCCATCTC-TATTTCACACAACCGAGTAAACCCTAGAATCTCCGC 393
||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 395 TTTTCTCACTTCCTCTCCATCTCAAATTTCACACAACCGAGTAAACCCTAGAATCTCCGC 454
Query 394 TTCTAATCCAATGGGTTTCATCACTTTCACTGGGCTTAATCATTGCAATTATCTCTAGGG 453
|||| || |||| || || ||| ||||||| ||||||||||| ||||||
Sbjct 455 TTCTCATTCAATTGG-TT--TCA---TCACTGGTCTTAATCATTG---------CTAGGG 499
Query 454 TTTACTCGGTTACCCTCTATCATCATCACTTAGAAGAATTGATCCTTGttcataattc-t 512
|||||||||||| ||| | | ||||||| | |||||||||||||||||||||| |
Sbjct 500 TTTACTCGGTTA-CCT-T-T-ATCATCA--T----CAATTGATCCTTGTTCATAATTCAT 549
Query 513 -atc--ttc-tt-t-tctttggcataaagattcaattttttcttcttcttcttctctatc 566
|| ||| || | |||||||||||||| ||||| ||||||||||||||| ||| | ||
Sbjct 550 CCTCTTTTCTTTCTGTCTTTGGCATAAAGTTTCAA-TTTTTCTTCTTCTTC-TCT-T-TC 605
Query 567 tCACTCAATCATGGCGTATCAGTCTGTTCCGGGTTCTGGGTTTCACTACTTGAATTCTCC 626
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 606 TCACTCAATCATGGCGTATCAGCCTGTTCCGGGTTCTGGGTTTCACTACTTGAACTCTCC 665
Query 627 TTTTGGTGATACAACTTTCACAAAGGTATTCGTCGGTGGCCTTGCTTGGGAGACTCAAAG 686
||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 666 TTTCGGTGATACAACTTTCACAAAGGTGTTCGTCGGTGGTCTTGCTTGGGAAACTCAAAG 725
Query 687 TGAAACCCTTCGTCGGCATTTCGAACAGTTCGGTGAAATCCTTGAAGCTGTTGTCATTGC 746
|||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 726 TGAAACTCTTCGCCAGCATTTCGAACAGTACGGTGAAATCCTTGAAGCTGTTGTCATTGC 785
Query 747 TGATAAGAACACTGGCCGATCCAAAGGTTATGGCTTTGTGACTTTCCGAGATCCAGAAGC 806
||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 786 TGATAAGAACACTGGTCGATCCAAAGGATATGGCTTTGTGACATTCCGAGATCCAGAAGC 845
Query 807 TGCTAGGAGAGCTTGTGCTGACCCAACTCCGATTATAGACGGTAGACGTGCAAACTGTAA 866
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 846 TGCTAGGAGAGCTTGTGCTGACCCTACTCCGATTATAGACGGTAGACGTGCAAACTGTAA 905
Query 867 TCTTGCTTCCCTTGGGAGACCTCGGCCTCCATTGCCCTATGCATTGATACCTAATATGCC 926
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 906 TCTTGCTTCCCTTGGGAGACCTCGGCCTCCATTGCCCTATGCAGTGATACCTAACATGCC 965
Query 927 TGGACGCTTAAGACCTGCTTCCCCGTACATTGGAAATGTGCAGGGTCCTCGTGGTTCACT 986
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 966 TGGACGCTTAAGACCTGCTTCCCCGTACATTGGAAATGTGCAGGGTCCTCGAGGTTCACT 1025
Query 987 TATTGGAAATTATCCGTATCAGCAACCACTTCCATATAACTACCAGCAAGGAGTTGTCTA 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TATTGGAAATTATCCGTATCAGCAACCACTTCCATATAACTACCAGCAAGGAGTTGTCTA 1085
Query 1047 TCCTTATGGGGTAACCCCTTATGGACCCGAGTACATGTACTCACAATCACAGGGTTTATA 1106
||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1086 TCCTTATGGAGTAACCGCTTATGGACCCGAGTACATGTACTCGCAATCACAGGGTTTATA 1145
Query 1107 TGGTCCATACATGGGTCAGCAGTACCTTCAGGTCTACGGAGTACCTGGAGCAGTGAATTC 1166
| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1146 TAGTCCATACATGGGTCAGCAATACCTTCAGGTCTATGGAGTACCTGGAGCAGTGAATTC 1205
Query 1167 ACCCATTTATCAATACGGGCAACTAAGTCAGACTATTCCTAGTGGCCATGGTTATCCAGC 1226
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1206 ACCCGTTTATCAATACGGGCAACTAAGTCAGACTATTCCTAATGGCCATGGTTATACAGC 1265
Query 1227 AGTTCAAGGGTATTCAGTTCCAGGAAGCCATGTTCTGCAGCTTGGTGGACCCACTGTCAG 1286
||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1266 AGTTCAAGGCTATTCGGTTCCAGGAAGCCATATTCTGCAGCTTGGTGGACCCACTGTCAG 1325
Query 1287 TGCGATGACCACTTCATCTATGTCTGCTCTTCAAGCTCCTTACCCTTCAGGTATACCAGG 1346
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1326 TACGATGACCACTTCATCTATGCCTGCTCTTCAAGCTCCTTACCCTTCAGGTATACCAGG 1385
Query 1347 CCCTGCTCCTGTACAGTCGCATATCATTGTCCACTCCCCTCAATTTATGCAGAGTAGCGG 1406
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1386 CCCTGCTCCCGTACAGTCGCATATCATTGTCCACTCCCCTCAATTTATGCAGAGTACCGC 1445
Query 1407 TTCTGACCAAACAACAAGGTGATTATTCTTGAGGACCGAGG-GAAAAAGGAAGTTAAGCG 1465
|||||||||||||||||| | | |||||||| ||| || | ||||| ||||||||||
Sbjct 1446 TTCTGACCAAACAACAAG-T--T-ATTCTTGAAGACTGAAGAGAAAA-GGAAGTTAAGT- 1499
Query 1466 GTAGTGAAACTGCTACTAGATGTG--GCAGCAGAGACTTCTTGTATTATTAAGTCTTGCA 1523
|||||||||||||||| || ||| |||| |||| |||| ||| |||||||||||||||
Sbjct 1500 -TAGTGAAACTGCTACTGGAGGTGTTGCAGAAGAGGCTTCCTGTTTTATTAAGTCTTGCA 1558
Query 1524 CATTATTTATCTTGCATCCTTAAGGTTATATAAAATAGTCTTGCTCAC-GGGAAGGCTCA 1582
| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct 1559 CGTTATTTATCTTGCATCCTTAAGGTTATGTAAAATAGTCTTGCTCACTGGGAAGGCGCA 1618
Query 1583 G---A-A-GGAAAAACGAAAAG----G-AAATTGAAGTTTCAGGGTTTACGCTTCCGTTT 1632
| | | ||||||| ||||| | |||||| ||| |||||||||| ||||||||||
Sbjct 1619 GCGCAGAAGGAAAAAAAAAAAGCAAAGGAAATTGGAGTGTCAGGGTTTATGCTTCCGTTT 1678
Query 1633 TCTTACCCATCCATCAATGTGTATAAAACACAGTCACAAAAAAGCTGCTGGCTCGAGCTC 1692
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1679 TCTTACCCATCCATCAATGTGTATAAAACACAGCCACAAAAAAGCTGCTGGCTCGAGCTT 1738
Query 1693 GGGTTGAGTTTGAAGGCACCATAACGGGTTTCCCTCGGAGGG-AAGACCATTAGTAATAA 1751
||||||||||||||||||||||| | ||||||||| |||||| ||||||| |||||||||
Sbjct 1739 GGGTTGAGTTTGAAGGCACCATAGCTGGTTTCCCTTGGAGGGGAAGACCAGTAGTAATAA 1798
Query 1752 GTTGGTGtacaatatgcatatatattatatacacacatacacaagcatatacatatGGTA 1811
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1799 GTTGGTGTACAATATGCATATAT-TTATA--CACACATACACAAGCATATACATATGGTA 1855
Query 1812 GAATCAAAATCTGATTCTTTTCTAGTCTAAAGTCGTAATACCACTACACTTCCTTCAGGT 1871
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1856 GAATCAAAATCTGATTCTTTTCAAGTCTGAAGTCGTAATACCACTACACTTCCTTCAGGT 1915
Query 1872 GCAGGAGTGTAGTGAGTAACATTGATAGGTATATATAGCCTTTGTCCCCAAGTCCTGCAT 1931
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1916 GCAGGAGTGTAGTGAGTAACATTGATAGGTATATA--GCCTTTGTCTTTAAGTCCTGCAT 1973
Query 1932 TGTAAGTAAAACATGTTCAT---GTCCTTTGTCTGTGACTGTTCATATTTAGGGTTCTTT 1988
|||||||||||||||||||| ||||||| ||||||| ||| ||||||||||||||| |
Sbjct 1974 TGTAAGTAAAACATGTTCATCATGTCCTTT-TCTGTGATTGTGCATATTTAGGGTTCTCT 2032
Query 1989 CTTCTTCCATGTCTGAACACACTGATGAATTGTTTATCTGAAGCTTACTTCAAAGTATGG 2048
|||||||||| |||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct 2033 CTTCTTCCAT--CTGAACACACTGG-GA-TTGTTTA-CTGAAGCTTACTTCAAAGTATGG 2087
Query 2049 AGTTGGCTCTTTTCTCAGAATTTCATTG 2076
||| ||||||||||||||||||||||||
Sbjct 2088 AGTAGGCTCTTTTCTCAGAATTTCATTG 2115
Score = 106 bits (57), Expect = 1e-21
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 AACTTCTTCATCATCACCATCAATGGAATTCCCCAAACCAAACCACCCTTTACCCTAAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 AACTTCTTCATCATCACCATCAATGGAATTCCCCAAACCAAACCACCCTTCACCCTAAAA 60
> AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262043-7265438 REVERSE LENGTH=2091
Length=2091
Score = 669 bits (362), Expect = 0.0
Identities = 598/711 (84%), Gaps = 19/711 (3%)
Strand=Plus/Plus
Query 573 AAT-CATGGCGTATCAGTCTG-TTCCGGGTTCTGGGTTTCACTACTTGAATTCTCCTTTT 630
||| |||||||||||| || | ||||| | ||||||||||| ||||||||||||||||||
Sbjct 600 AATCCATGGCGTATCATTC-GATTCCGAGCTCTGGGTTTCATTACTTGAATTCTCCTTTT 658
Query 631 GGTGATACAA-CTTTCAC-AAAGGTATTCGTCGGTGGCCTTGCTTGGGAGACTCAAAGTG 688
||||| |||| |||| || ||| || || || ||||||||||| |||||||||||||| |
Sbjct 659 GGTGACACAACCTTT-ACTAAA-GTCTTTGTTGGTGGCCTTGCCTGGGAGACTCAAAGCG 716
Query 689 AAACCCTTCGTCGGCATTTCGAACAGT-TCGGTGAAATCCTTGAAGCTGTTGTCATTGCT 747
| || ||||||||||||||||| || | | ||||| |||||||| ||||| || ||| ||
Sbjct 717 AGACTCTTCGTCGGCATTTCGATCAATAT-GGTGATATCCTTGAGGCTGTCGTTATTACT 775
Query 748 GATAAGAACACTGGCCGATCCAAAGGTTATGGCTTTGTGACTTTCCGAGATCCAGAAGCT 807
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 776 GATAAGAACACTGGTCGATCCAAAGGTTATGGCTTTGTGACTTTCCGAGATCCAGAGGCT 835
Query 808 GCTAGGAGAGCTTGTG-CTGACCCAACTCCGATTATAGACGGTAGACGTGCAAACTGTAA 866
||||||||||| |||| | || ||||| || |||||||| || ||||| || || |||||
Sbjct 836 GCTAGGAGAGCCTGTGTC-GATCCAACACCTATTATAGATGGCAGACGAGCGAATTGTAA 894
Query 867 TCTTGCTTCCCTTGGGAGACCTCGGCCTCCATTGCCCTATGCATTGATACCTAATA-TGC 925
||| ||||| ||||||||| || |||||||| ||| |||||| ||||||| || | |
Sbjct 895 TCTCGCTTCTCTTGGGAGATCTAGGCCTCCAATGCAATATGCAGTGATACCCCATGCT-C 953
Query 926 CTGGACGCTTAAGACCTGCTTCCCCGTACATTGGAAATGTGCAGGGTCCTCGTGGTT--C 983
||||||| |||||||| ||||||| || |||||| ||||||| ||||||| |||| |
Sbjct 954 CTGGACGGGTAAGACCTCCTTCCCCATATGTTGGAAGTGTGCAGAGTCCTCGCGGTTTGC 1013
Query 984 ACTTATTGGAAATTATCCGTATCAGCAACCACTTCCATATAACTACCAGCAAGGAGTTGT 1043
| || |||||| |||||||||| ||||| | | | ||||||||||| |||||||| ||
Sbjct 1014 A-TT-TTGGAAGCCATCCGTATCACCAACCCCCTACTTATAACTACCAACAAGGAGTGGT 1071
Query 1044 CTATCCTTATGGGGTAACCCCTTATGGACCCGAGTACATGTACTCACAATCACAGGGTTT 1103
|| ||||||||||| || || |||||||| || |||||||||||||| || ||||||||
Sbjct 1072 GTACCCTTATGGGGTTACACCATATGGACCTGACTACATGTACTCACAGTCTCAGGGTTT 1131
Query 1104 ATATGGTCCATACATGGGTCAGCAGTACCTTCAGGTCTACGGAGTACCTGGAGCAGTGAA 1163
|||||||| ||||||||||| |||||||||||||| || ||||||||||| ||||| ||
Sbjct 1132 CTATGGTCCTTACATGGGTCAACAGTACCTTCAGGTTTATGGAGTACCTGGGGCAGTTAA 1191
Query 1164 TTCACCCATTTATCAATACGGGCAACTAAGTCAGACTATTCCTAGTGGC-CATGGTTATC 1222
||||| ||||||||| |||||||| || || ||||||||| ||| | || ||||||
Sbjct 1192 CTCACCGGGTTATCAATATGGGCAACTGAGCCATACTATTCCTGGTG-CTCACGGTTATA 1250
Query 1223 CAGCAGTTCAAGGGTATTCAGTTCCAGGAAGCCATGTTCTGCAGCTTGGTG 1273
|||| | |||||| |||||| ||||||||| |||||||| ||||||||||
Sbjct 1251 CAGCGGGTCAAGGTTATTCACATCCAGGAAGTCATGTTCTACAGCTTGGTG 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102911117250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5