BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476805
Length=578
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76480.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 793 0.0
AT1G20890.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 420 8e-117
> AT1G76480.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G20890.1).
| chr1:28692076-28693428 REVERSE LENGTH=838
Length=838
Score = 793 bits (429), Expect = 0.0
Identities = 526/574 (92%), Gaps = 2/574 (0%)
Strand=Plus/Plus
Query 5 CAGGGTTTCTGATTACAAGATTGGAACCAGAAAAGAATCG-ACGTTTCCATTACACAGAA 63
||||||| |||||||||||||||||| ||||||||||||| | ||||||||| |||| |
Sbjct 61 CAGGGTTGCTGATTACAAGATTGGAATCAGAAAAGAATCGTA-TTTTCCATTAAACAGGA 119
Query 64 CACTCTGCTACATACTGTTATGTCTTTTAGTCTTCGTAAATGGTTTGCCTTGTCTCGGCC 123
||||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct 120 CACTCTGCTACTTACTATTATGTCTTGTAGTCTTGGTAAATGGTTTGCCTTGTCTCTGCC 179
Query 124 ACGAGAACATGTTTGATGTGAAAGCTTTATATGTTGGGAAGGAATTGTGGGGAGAGACTC 183
|||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 180 ACGATAACATGTTTGATGTGAAAGCTTTATATGTTGGGAAGGAACTGTGGAGAGAAACTC 239
Query 184 TGTCATTGCAATCAGGTTCACGGGTTTACAAGTTAGAAGGACTAAAGTCTAATTCTTGTT 243
|| |||||||||| ||||| || |||||||||||| ||||||| ||||| ||||| || |
Sbjct 240 TGCCATTGCAATCGGGTTCTCGCGTTTACAAGTTACAAGGACTGAAGTCGAATTCCTGGT 299
Query 244 ATGAAGTGAAGATATCATACCCTGCTTCTATACCAGCTCGGTTTTCGCTGAAACTACTTA 303
||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| |
Sbjct 300 ATGAAGTGAAGATATCATACCCTGCTTCTATACCAGCTCGGGTCTCGCTGCAACTACTAA 359
Query 304 AGAACCGTGAAATGGGATTGAAGCTAAACCAGATGAGGAGATTACTAAACACTGAGAAGT 363
|||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 AGAACCATGAAATGGAATTGAAGCTAAACCAAATGAGGAGATTACTAAACACTGAGAAGC 419
Query 364 TGATGTTCAAGGTGGAAAGTCTTGAAGAAGTTAACAATAAGGCTGGATTGAATGTTTTGG 423
|||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 TGATCTTCAAGGCAGAAAGTCTCAAAGAAGTTAACAATAAGGCTGGATTGAATGTTTTGG 479
Query 424 TGACCGTGGAACCCGAGGGGATTGTGGCAATACCAAATTCCAAAGAAAGATCTTTCATCA 483
||||| |||||||||||||||||||||||||||||||||| | |||||||| ||| ||||
Sbjct 480 TGACCTTGGAACCCGAGGGGATTGTGGCAATACCAAATTCTAGAGAAAGATATTTTATCA 539
Query 484 TTTACAATATAGTTTGTGAAGAACAACTCATGGGCATACCTTATTCAAGCTGGTCAGTGG 543
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 540 TTTACAACATAGTTTGTGAAGAACAACTCATGGGGATACCTTATTCAAGCTGGTCAGTGG 599
Query 544 TTATATTAGTAGCTTTGTGTCTCGTGGTGGCGTT 577
|| | |||||||||||||||||||||||| ||||
Sbjct 600 TTCTGTTAGTAGCTTTGTGTCTCGTGGTGTCGTT 633
> AT1G20890.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT1G76480.2);
Has 33 Blast hits to 33 proteins in 11 species: Archae
- 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 31;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7265823-7267323
REVERSE LENGTH=978
Length=978
Score = 420 bits (227), Expect = 8e-117
Identities = 411/500 (82%), Gaps = 12/500 (2%)
Strand=Plus/Plus
Query 84 TGTCTTTTAGTCTTCGTAAATGGTT-TGCCTTG-TCTCGGCCACGAGA-ACATGTTTGAT 140
|||||| | |||||| ||||| || || |||| | | || | |||| || |||||| |
Sbjct 159 TGTCTTATCGTCTTCATAAAT-TTTGTGACTTGTTAT-AGCGATGAGAGAC-TGTTTGGT 215
Query 141 GTG-AAAGCTTTATATGTTGGGAAGGAA-TTGTGGGGAGAGACTCTGTCATTGCAATCAG 198
| | ||| ||||||||| |||||||||| || ||| |||||| ||| ||||| |||| |
Sbjct 216 G-GAAAAACTTTATATGCTGGGAAGGAACTT-TGGAAAGAGACACTGCCATTGAAATCTG 273
Query 199 GTTCACGGGTTTACAAGTTAGAAGGACTAAAGTCTAATTCTTGTTATGAAGTGAAGATAT 258
| || || |||||||| ||| |||| || ||||| || ||||| |||||||| |||||||
Sbjct 274 GATCTCGAGTTTACAAATTACAAGGGCTTAAGTCGAACTCTTGGTATGAAGTCAAGATAT 333
Query 259 CATACCCTGCTTCTATACCAGCTCGGTTTTCGCTGAAACTACTTAAGAACCGTGAAATGG 318
||||||| ||||||||||| |||| ||||||||| || |||| |||||| ||| |||||
Sbjct 334 CATACCCAGCTTCTATACCGGCTCTATTTTCGCTGCAATTACTGAAGAACGGTGTAATGG 393
Query 319 GATTGAAGCTAAACCAGATGAGGAGATTACTAAACACTGAGAAGTTGATGTTCAAGGTGG 378
| |||||| | ||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 394 GTTTGAAGGTTAACCATATGAGGAGATTACTAAACACTGAGAAGTTGATCTTCAAAACAG 453
Query 379 AAAGTCTTGAAGAAGTTAACAATAAGGCTGGATTGAATGTTTTGGTGACCGTGGAACCCG 438
||||| ||||||||||| | || |||| |||||| ||||||||||||| |||||||| |
Sbjct 454 AAAGTATTGAAGAAGTTGATAACAAGGAGGGATTGTATGTTTTGGTGACGGTGGAACCTG 513
Query 439 AGGGGATTGTGGCAATACCAAAT-TCCAAAGAAAGATCTTTCATCATTTACAATATAGTT 497
| || || ||||| ||||||||| | ||||||||| | | |||||||||||| ||||||
Sbjct 514 AAGGAATCGTGGCTATACCAAATGTT-AAAGAAAGACCGTCCATCATTTACAACATAGTT 572
Query 498 TGTGAAGAACAACTCATGGGCATACCTTATTCAAGCTGGTCAGTGGTTATATTAGTAGCT 557
||||||||||| ||| | ||||| ||| | ||||||||||||||||| | ||||||| |
Sbjct 573 TGTGAAGAACAGCTCTTAGGCATCCCTCACTCAAGCTGGTCAGTGGTGGTTTTAGTAGTT 632
Query 558 TTGTGTCTCGTGGTGGCGTT 577
||||||||||| || |||||
Sbjct 633 TTGTGTCTCGTTGTCGCGTT 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27779483291
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5