BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476807
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76500.1 | Symbols: SOB3, AHL29 | Predicted AT-hook DNA-bind... 1243 0.0
> AT1G76500.1 | Symbols: SOB3, AHL29 | Predicted AT-hook DNA-binding
family protein | chr1:28705527-28706562 FORWARD LENGTH=1036
Length=1036
Score = 1243 bits (673), Expect = 0.0
Identities = 827/895 (92%), Gaps = 35/895 (4%)
Strand=Plus/Plus
Query 1 GCCATGGACGGTGGTTACGATCAAACCGGAGGAGCTTCTAGATACTTTCACAACCTCTTC 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3 GCCATGGACGGTGGTTACGATCAATCCGGAGGAGCTTCTAGATACTTTCACAACCTCTTC 62
Query 61 AGGCCTGAGCTTCAACACCAGCTTCAACCTCAGCCTCAACTTCAGCC-TT---T--GCCT 114
|||||||||||||| ||||||||||||||||||||||||||||| || || | ||||
Sbjct 63 AGGCCTGAGCTTCATCACCAGCTTCAACCTCAGCCTCAACTTCACCCTTTGCCTCAGCCT 122
Query 115 CAG---C--CC-CAG---CAGCAGC--AA-TCAGATGATGAATCTGACTCCAACAAGGAT 162
||| | || ||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 123 CAGCCTCAACCTCAGCCTCAGCAGCAGAATTCAGATGATGAATCTGACTCCAACAAGGAT 182
Query 163 CCGGGTTCCGACCCAGTTACCTCGGGTTCAACTCCTGGAAAACGTCCACGTGGACGTCCT 222
||||||||||||||||||||||| ||||||| || || |||||||||||||||||||||
Sbjct 183 CCGGGTTCCGACCCAGTTACCTCTGGTTCAA--CC-GGGAAACGTCCACGTGGACGTCCT 239
Query 223 CCGGGATCTAAGAACAAGCCGAAACCACCGGTGATAGTTACAAGAGATAGCCCCAACGTG 282
|||||||| |||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 240 CCGGGATCCAAGAACAAGCCGAAGCCACCGGTGATAGTGACTAGAGATAGCCCCAACGTG 299
Query 283 CTTAGATCTCATGTTCTTGAAGTCTCATCTGGAGCCGACATAGTTGAGAGCGTTACCACT 342
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 CTTAGATCTCATGTTCTTGAAGTCTCATCTGGAGCCGACATAGTCGAGAGCGTTACCACT 359
Query 343 TACGCTCGCCGGAGAGGGAGGGGTGTCTCCATACTCAGTGGTAACGGCACGGTGGCTAAC 402
||||||||| ||||||| || || |||||||| |||||||||||||||||||||||||||
Sbjct 360 TACGCTCGCAGGAGAGGAAGAGGAGTCTCCATTCTCAGTGGTAACGGCACGGTGGCTAAC 419
Query 403 GTCAGTCTCCGTCAGCC-G----G-CAGCGGCTCATGGGGCTAATGGTGGAACCGGAGGT 456
||||||||||| ||||| | | |||||||||||||||| ||||||||||||||||||
Sbjct 420 GTCAGTCTCCGGCAGCCGGCAACGACAGCGGCTCATGGGGCAAATGGTGGAACCGGAGGT 479
Query 457 GTTGTGGCTTTACATGGAAGGTTTGAGATACTTTCCCTCACCGGTACGGTGTTACCTCCG 516
||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 480 GTTGTGGCTCTACATGGAAGGTTTGAGATACTTTCCCTCACAGGTACGGTGTTGCCGCCC 539
Query 517 CCTGCGCCGCCGGGATCCGGTGGTCTTTCTATCTTTCTTTCCGGCGTTCAAGGTCAGGTG 576
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCTGCGCCGCCAGGATCCGGTGGTCTTTCTATCTTTCTTTCCGGCGTTCAAGGTCAGGTG 599
Query 577 ATCGGAGGAAACGTGGTGGCTCCGCTTGTGGCTTCGGGTCCAGTGATACTAATGGCTGCA 636
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ATTGGAGGAAACGTGGTGGCTCCGCTTGTGGCTTCGGGTCCAGTGATACTAATGGCTGCA 659
Query 637 TCGTTCTCTAATGCAACTTTCGAAAGACTTCCGCTTgaagatgaaggaggagaagg-ggc 695
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||
Sbjct 660 TCGTTCTCTAATGCAACTTTCGAAAGGCTTCCCCTTGAAGATGAAGGAGGAGAAGGTGG- 718
Query 696 aggaggagaagttggagaagttggagaaggaggaggaggaggaggTGGTCCACCGCCGGC 755
|| ||| || | | |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 719 AG-AGG-GA-G--G-AGAAGTTGGAGAGGGAGGAGGAGGAGAAGGTGGTCCACCGCCGGC 772
Query 756 CACGTCATCATCACCACCTTCTGGAGCCGGTCAAGGACAGCTAAGAGGTAACATGAGTGG 815
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 773 CACGTCATCATCACCACCATCTGGAGCCGGTCAAGGACAGTTAAGAGGTAACATGAGTGG 832
Query 816 CTATGATCAGTTTTCCGGTGATCCTCATTTGCTTGGTTGGGGAGCCGCTGCCGCA 870
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 833 TTATGATCAGTTTGCCGGTGATCCTCATTTGCTTGGTTGGGGAGCCGCAGCCGCA 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5