BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476809
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76510.3 | Symbols: | ARID/BRIGHT DNA-binding domain-contai... 1199 0.0
AT1G20910.1 | Symbols: | ARID/BRIGHT DNA-binding domain-contai... 837 0.0
> AT1G76510.3 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein | chr1:28708614-28712948 REVERSE LENGTH=1776
Length=1776
Score = 1199 bits (649), Expect = 0.0
Identities = 801/872 (92%), Gaps = 20/872 (2%)
Strand=Plus/Plus
Query 1 TTTTGATCTGCCTATCTCTCCGTTAAATTGATAATTTTTCCGTTTCTCGCTCtttttttC 60
||||||||||| |||||||||||| ||||||| || ||||||||||||||| | ||||||
Sbjct 42 TTTTGATCTGCATATCTCTCCGTTTAATTGAT-ATCTTTCCGTTTCTCGCT-TCTTTTTC 99
Query 61 TCCGCCGGCGTCCTTCAATTTCGCCGGCTGCTAACGAACCCT-ACCC-CG-CCACTCCAC 117
|||||||||||||||| |||||||||||||||| |||||||| |||| || | |||||||
Sbjct 100 TCCGCCGGCGTCCTTCCATTTCGCCGGCTGCTATCGAACCCTAACCCGCGACGACTCCAC 159
Query 118 CGTCTCCGGCGTCGTATTCTTCCGGCGAAACCGGTAACCATATCTTTGGTTTCTTCTAGA 177
||||||||||||| | ||||||||||||||||||||||| ||||||| ||||| | ||||
Sbjct 160 CGTCTCCGGCGTCTTCTTCTTCCGGCGAAACCGGTAACCGTATCTTTTGTTTC-TATAGA 218
Query 178 ATTAGCTTTTTGATGGCGGACACCGAAATGCAAGAGCAAGATGTGCCTTCTGGTGCTGAT 237
|||||||| |||||||||| || ||||||||||||||||||||| | | || ||| |
Sbjct 219 ATTAGCTTCATGATGGCGGATACTGAAATGCAAGAGCAAGATGTG-C--C--GT-CTGGT 272
Query 238 ACCAAAGGTGTTGTAGAGGAGGAGGAGCCTTCAGAACCAGAGAAAGACCAAAACTCTATT 297
|||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||
Sbjct 273 ACCAAAGGTGTTGT-----A-GAGGAGCCTTCAGAACTAGAGAAAGACCTAAACTCTATT 326
Query 298 CAAATACCTACGTCCCCTGTTCTC-GAGGATAAGACTCATACTCTGGACAGTGATGTTCA 356
||| ||||| ||||||||||| | ||||||| |||||||||| |||| |||||||||||
Sbjct 327 GAAAGACCTAAGTCCCCTGTTC-CAGAGGATACGACTCATACTTTGGATAGTGATGTTCA 385
Query 357 TTTATCTGATGCTCCCATTACTAATCAAACTGAGGCTAATGAAGAGGTAGGTGGTCACAA 416
||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||| ||
Sbjct 386 TTTATCTGATGCTCCCATTGCTAATCAAATTGAGGCTAATGAAGAGGTTGGTGGTCAGAA 445
Query 417 CAGTGTTGATGGCAAGAATGGTGATGTCGATCAGTCTGAAAAGAAGGTTATTAGTGATGG 476
|||||||||||| | |||||||||||| |||||||||||||||||| ||| |||||||||
Sbjct 446 CAGTGTTGATGGGAGGAATGGTGATGTTGATCAGTCTGAAAAGAAGATTACTAGTGATGG 505
Query 477 CGGTCAAGAGGAGACAACACTTGGGGAATCAATTCCTCTCAAGGGGGAACCGTCGAGTCC 536
|||||||||||||||||||||||||||||||| |||| | |||||||| |||||||||||
Sbjct 506 CGGTCAAGAGGAGACAACACTTGGGGAATCAAATCCTTTGAAGGGGGATCCGTCGAGTCC 565
Query 537 GCATGTTCCAGAAAAAAGTGTTAAGAAGTGGAAGACATGGTTGTTGAGTGATTCTGAGGC 596
|||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 566 TCATGTTCCTGAAGAAAGTGTTAAGAAGTGGAAGACATGGTTGTTGAGTGATGCTGAGGC 625
Query 597 CAGGGAAGTTGATGAAGCAGGGACACCACCGGATCAAGAGGCGTTTATTAAAGAAGTGGA 656
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 626 CAGGGAAGTTGATGAAGCAGGGGCACCACAGGATCAAGAGGCGTTTATTAAAGAAGTGGA 685
Query 657 GGCCTTCCACAAGGAGAATTTCCTTGAATTTAAAGCCCCAAAGTTTTATGGACAGCCCTT 716
||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 686 GGCCTTCAACAAGGAGAATTTCCTGGAATTTAAAGCCCCAAAGTTTTACGGACAGCCCTT 745
Query 717 AAATTGTCTCAAGCTATGGAGAGCCGTCATCAAGTTAGGTGGCTACGACGTGGTCACCAC 776
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 746 AAATTGTCTCAAGCTTTGGAGAGCCGTTATCAAGTTAGGTGGCTACGATGTGGTCACCAC 805
Query 777 ATCTAAGCTATGGCGGCAAGTTGGAGAATCCTTCCATCCTCCAAAAACATGCACTACAGT 836
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 806 ATCTAAGCTATGGCGGCAAGTTGGAGAATCGTTCCATCCTCCAAAAACATGCACTACAGT 865
Query 837 CTCCTGGACATTCCGCATTTTCTATGAAAAGG 868
||||||||||||||||||||||||||||||||
Sbjct 866 CTCCTGGACATTCCGCATTTTCTATGAAAAGG 897
Score = 1068 bits (578), Expect = 0.0
Identities = 614/632 (97%), Gaps = 0/632 (0%)
Strand=Plus/Plus
Query 868 GCACTTTTGGAGTATGAGAAGTATTTAAGGCAAAATGGTGAGCTTAACCTTCCTGGTTCA 927
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 966 GCACTTTTGGAGTATGAGAAGCATTTAAGGCAAAATGGTGAGCTTAACCTTCCTGGTTCA 1025
Query 928 GCTTCTCTTCCGTCTTCAGGCCTTGAAAAGGAGGCAACTAGCCATCAAGCTTCAGGGTCA 987
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1026 GCTTCTCTTCCGTCTTCAGGCATTGAAAAGGAGGCAAGTAGCCATCAAGCTTCAGGGTCA 1085
Query 988 GGCAGAGCACGAAGAGATGCTGCAGCTCGTGCTATGCAAGGTTGGCATTCTCAGCGCCTT 1047
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GGCAGAACAAGAAGAGATGCTGCAGCTCGTGCTATGCAAGGTTGGCATTCTCAGCGCCTT 1145
Query 1048 CTTGGATCTGGGGAGGTTACTGAGCCTATTGTTAAGGATAAAGGCTTGAATTCAACCCCA 1107
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1146 CTTGGATCTGGGGAGGTTACTGAGCCTATTGTTAAGGAGAAAGGCTTGAATTCAACCCCA 1205
Query 1108 AAGCaaaaaaaCCTCAAAAACATTGGTGTGCAGAAACAAAAGACAACACCCGGCATGGAC 1167
|||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1206 AAGCAAAAGAACCTCAAAAACATTGGTGTGCAGAAACAAAAAACAACAACCGGCATGGAC 1265
Query 1168 CTTGTTTTTTCACATGAATCAGAAAAACAGTCAACTGCCGAGGTTATAGATGTTGGACCC 1227
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 CTTGTTTTTTCACACGAATCAGAAAAACAGTCAACTGCCGAGGTTATAGATGTTGGACCC 1325
Query 1228 CCTGCAGACTGGGTGAAGATAAATGTCAGAGAAACTAAAGACTGCTTTGAGATATTTGCC 1287
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CCTGCAGACTGGGTGAAGATCAATGTCAGAGAAACTAAAGACTGCTTTGAGATATTTGCC 1385
Query 1288 CTAGTACCTGGACTTCTTCGCGAAGAGGTCCGCGTTCAGTCAGACCCTGCAGGGCGGCTA 1347
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1386 CTGGTACCTGGACTTCTTCGCGAAGAGGTCCGTGTTCAGTCAGACCCTGCAGGGCGGCTA 1445
Query 1348 GTTATAGCAGGCCAACCTGAGCAACTTGACAATCCATGGGGAATCACACCCTTCAAAAAG 1407
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1446 GTTATAGCAGGCCAACCTGAGCAACTTGACAATCCTTGGGGAATCACACCCTTCAAAAAG 1505
Query 1408 GTTGTGAACTTTCCAGCAAGAATCGATCCACTTCACACGTCAGCGGTTGTGAGCCTACAT 1467
|||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 1506 GTTGTGAACTTTCCCGCAAGAATCGATCCGCTGCACACGTCAGCGGTTGTGAGCCTGCAT 1565
Query 1468 GGTCGACTGTTTGTGCGAGTCCCATTTGAGCA 1499
||||||||||||||||||||||||||||||||
Sbjct 1566 GGTCGACTGTTTGTGCGAGTCCCATTTGAGCA 1597
> AT1G20910.1 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein | chr1:7276943-7281138 REVERSE LENGTH=1638
Length=1638
Score = 837 bits (453), Expect = 0.0
Identities = 847/1032 (82%), Gaps = 47/1032 (5%)
Strand=Plus/Plus
Query 562 AAGTGGAAGACATGGTTGTTGAGTGATTCTGAGGC-CAGGGAAGTTGATGAAGCAGGGAC 620
||| ||||||| ||| || | | ||||||||||| ||||||| |||||||||||||||
Sbjct 434 AAGAGGAAGACTTGGCTGCT--G-GATTCTGAGGCACAGGGAA-CTGATGAAGCAGGGAC 489
Query 621 ACCACCGGATCAAGAGGCGTTTATTAA-AGAAGTGGAGGCCTTCCACAAGGAGAATTTCC 679
||| || |||| ||||||| ||| ||||||||||||||| |||| |||| |||||
Sbjct 490 ACCGGTAGAACAAGTGGCGTTT-CTAAGAGAAGTGGAGGCCTTTTACAAAGAGAGTTTCC 548
Query 680 TTGAATTTAAAGCC-CCAAAGTTTTATGGACAGCCCTTAAA-TTGTCTCAAGCTATGGAG 737
| ||||||||| || || ||||||||||||||||| ||||| | ||||||||| ||| |
Sbjct 549 TGGAATTTAAA-CCTCCTAAGTTTTATGGACAGCCTTTAAACAT-TCTCAAGCTTTGGCG 606
Query 738 AGCCGTCATCAAGTTAGGTGGCTACGACGTGGTCACCACATCTAAGCTATGGCGGCAAGT 797
||| ||| | || |||||||||| || |||||||||||| |||||| |||||||||||
Sbjct 607 AGCAGTCGTGAACCTAGGTGGCTATGAAGTGGTCACCACAAATAAGCTGTGGCGGCAAGT 666
Query 798 TGGAGAATCCTTCCATCCTCCAAAAACATGCACTACAGTCTCCTGGACATTCCGCATTTT 857
||||||||||||| ||||||| || |||||||| |||||||||| |||||||||| |||
Sbjct 667 TGGAGAATCCTTCAATCCTCCCAAGACATGCACAACAGTCTCCTACACATTCCGCAATTT 726
Query 858 CTATGAAAAGGCACTTTTGGAGTATGAGAAGTATTTAAGGCAA-AATGGTGAGCTTAACC 916
|||||| ||||||||||||||||| || |||| ||||||| || ||||||||||||||||
Sbjct 727 CTATGAGAAGGCACTTTTGGAGTACGAAAAGTGTTTAAGG-AATAATGGTGAGCTTAACC 785
Query 917 TTCCTGGTTCAGC-TTCTCTTCCGTCTT-CAGGCCTTGA-AAAGGAGGCAACTAGCCATC 973
||||||||||| | || ||| ||||| || | | || ||| ||| ||| ||||||||
Sbjct 786 TTCCTGGTTCAACATT-GATTCTGTCTTCCA-GTGTCGAGAAA-GAGCCAAGTAGCCATC 842
Query 974 AAGCTTCAGGGTCAGGCAGAGCACGAAGAGATGCTGCAGCTCGTGCTATGCAAGGTTGGC 1033
||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 843 AAGGTTCAGGGTCAGGCAGGGCACGAAGAGATTCTGCAGCTCGTGCTATGCAAGGTTGGC 902
Query 1034 ATTCTCAGCGCCTTCTTGGATCTGGGGAGGTTACTGAGCCTATTGTTAAGGATAAAGGCT 1093
|| | ||||||||| |||||||||| |||||||||| |||| |||||||||||| ||||
Sbjct 903 ATGCGCAGCGCCTTGTTGGATCTGGAGAGGTTACTGCGCCTGCTGTTAAGGATAAGGGCT 962
Query 1094 TGAATT-CAACCCCAAAGCaaaa-aaaCCTCAAAAACATTGGTG-TGCAGAAACAAAAGA 1150
| |||| | ||||||||||| || |||| |||||| |||||| | |||| ||||| || |
Sbjct 963 T-AATTTCCACCCCAAAGCACAAGAAAC-TCAAAAGCATTGG-GCTGCAAAAACACAA-A 1018
Query 1151 CAACACCCG-GCATGGACCTTGTTTTTTCACATGAATCAGAAAAACAGTCAACTGCCGAG 1209
||||| | ||||||||| |||| || || ||||| | || ||||||| |||| |||
Sbjct 1019 CAACAAACTAGCATGGACCATGTTGTTACAAATGAAGCTGACAAACAGTTGGCTGCTGAG 1078
Query 1210 GTTATAGATGTTGGACCCCCTGCAGACTGGGTGAAGATAAATGTCAGAGAAACTAAAGAC 1269
||| | |||||||||||| ||| |||||||||||||||||||||| |||| |||| ||
Sbjct 1079 GTTGTTGATGTTGGACCCGTTGCTGACTGGGTGAAGATAAATGTCAAAGAATCTAAGGAT 1138
Query 1270 TGCTTTGAGATATTTGCCCTAGTACCTGGACTTCTTCGCGAAGAGGTCCGCGTTCAGTCA 1329
| ||| |||||||||||| | |||||||||||||||||| ||||||| || |||| |||
Sbjct 1139 TCCTTCGAGATATTTGCCTTGGTACCTGGACTTCTTCGCAAAGAGGTTCGAATTCAATCA 1198
Query 1330 GACCCTGCAGGGC--GGCTAGTTATAGCAGGCCAACCTGAGCAACTTGACAATCCATGGG 1387
|| ||||| ||| || | |||||| ||||||| || ||||| ||||||||||| ||||
Sbjct 1199 GATCCTGC-GGGAAAGG-TGGTTATAACAGGCCAGCCAGAGCAGCTTGACAATCCTTGGG 1256
Query 1388 GAATCACACCCTTCAAAAAGGTTGT-GAACTT-TCCAGCAAGAATCGATCCACTTCACAC 1445
| || ||||||||||||||| |||| || ||| || ||||||||| ||||| ||||||||
Sbjct 1257 GGATTACACCCTTCAAAAAGATTGTTGA-CTTATC-AGCAAGAATTGATCCGCTTCACAC 1314
Query 1446 GTCAGCGGTTGTGAGCCTACATGGTCGACTGTTTGTGCGAGTCCCATTTGAGCAGTGACC 1505
|| ||||| ||||| | ||||| || |||| | ||||| || |||||||||| |
Sbjct 1315 ATCCGCGGTCATGAGCATGCATGGACGGTTGTTCATACGAGTTCCGTTTGAGCAGTAAT- 1373
Query 1506 GG-TCTCATCCCAAGTGAGCTTGTTCT-TTATT--TG-TTTCTTTTAGGAATTCGTTTGT 1560
|| | | || ||| ||||| || | || || || |||||| ||||||||| | |||
Sbjct 1374 GGAT-T--TC--AAGAGAGCTGGT-CAGTTGTTCGTGGTTTCTTCTAGGAATTCATATGT 1427
Query 1561 ATCAGAACTAAA 1572
||||||| |||
Sbjct 1428 TTCAGAACCAAA 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82379094345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5