BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476812 Length=1248 Score E Sequences producing significant alignments: (Bits) Value AT1G76540.1 | Symbols: CDKB2;1 | cyclin-dependent kinase B2;1 |... 1823 0.0 > AT1G76540.1 | Symbols: CDKB2;1 | cyclin-dependent kinase B2;1 | chr1:28720328-28722521 REVERSE LENGTH=1338 Length=1338 Score = 1823 bits (987), Expect = 0.0 Identities = 1143/1214 (94%), Gaps = 28/1214 (2%) Strand=Plus/Plus Query 31 TCTCATTTAATTATATAACCGATCTACACTTTG-T-T-------TTCACTTTCCCAACAA 81 |||||||||||||||||||| |||||||||||| | | ||||||||||||| || Sbjct 61 TCTCATTTAATTATATAACCTATCTACACTTTGATCTCCGACAATTCACTTTCCCAATAA 120 Query 82 GAACCAACTgagagacagagagagcgccggagaagaagaattttagagagagagCGATGG 141 |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 121 GAACCAACTGAGAG--AGAGAGAGCGCCGGAGAAGAAGAATTTT----AGAGAGCGATGG 174 Query 142 ACGAGGGAGTTATAGCAGTTTCCGCCATGGATGCATTT-GAGAAGCTTGAGAAAGTTGGG 200 |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 175 ACGAGGGAGTTATAGCAGTTTCCGCCATGGATGC-TTTCGAGAAGCTTGAGAAAGTTGGT 233 Query 201 GAAGGGACGTACGGGAAAGTTTACAGAGCCAGAGAGAAAGCTACCGGAAAAATCGTCGCT 260 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 234 GAAGGGACATACGGGAAAGTTTACAGAGCCAGAGAGAAAGCTACCGGGAAAATCGTCGCT 293 Query 261 CTCAAGAAGACGCGTCTCCATGAGGACGAAGAAGGCGTTCCTTCCACCACTCTTCGTGAG 320 || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 294 CTAAAGAAGACGCGTCTCCATGAGGACGAAGAAGGCGTTCCTTCCACCACTCTCCGCGAG 353 Query 321 ATCTCCATCTTGCGCATGCTTGCTCGTGATTCC-CACATCGTCAGGTTGATGGATGTTAA 379 |||||||| ||||| ||||| |||||||| ||| ||| |||||||||| ||||||||||| Sbjct 354 ATCTCCATTTTGCGAATGCTCGCTCGTGA-TCCTCACGTCGTCAGGTTAATGGATGTTAA 412 Query 380 GCAAGGACTAAGCAAAGAAGGCAAAACTGTACTGTACCTGGTTTTTGAATACATGGACAC 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 413 GCAAGGACTAAGCAAAGAAGGCAAAACTGTACTGTACCTGGTTTTTGAATACATGGACAC 472 Query 440 TGATGTCAAGAAATTCATCAGAAGTTTCCGTAGCACTGGCGAGAACATTCCAACCCAAAC 499 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 473 TGATGTCAAGAAATTCATCAGAAGTTTCCGTAGCACTGGCAAGAACATTCCAACCCAAAC 532 Query 500 TATCAAGAGCTTGATGTACCAACTATGTAAAGGAATGGCATTCTGTCATGGCCACGGGAT 559 |||||||||||||||||| |||||||| ||||| ||||||||||| ||||| |||||||| Sbjct 533 TATCAAGAGCTTGATGTATCAACTATGCAAAGGTATGGCATTCTGCCATGGTCACGGGAT 592 Query 560 ATTGCACAGAGATCTCAAGCCTCACAATCTCTTGATGGATCCCAAGACAATGAGGCTCAA 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 593 ATTGCACAGAGATCTCAAGCCTCACAATCTCTTGATGGATCCCAAGACAATGAGGCTCAA 652 Query 620 AATAGCAGATCTTGGTTTAGCCAGAGCCTTCACTCTGCCAATGAAGAAGTATACCCATGA 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 653 AATAGCAGATCTTGGTTTAGCCAGAGCCTTCACTCTGCCAATGAAGAAGTATACCCATGA 712 Query 680 GATATTAACTCTATGGTATAGAGCTCCAGAAGTTCTTCTTGGGGCCACCCATTACTCTAC 739 |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 713 GATATTAACTCTTTGGTATAGAGCTCCAGAGGTTCTTCTTGGTGCCACCCATTACTCTAC 772 Query 740 AGCTGTGGATATGTGGTCTGTTGGCTGCATCTTTGCTGAACTTGTGACCAACCAAGCAAT 799 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 773 AGCTGTGGATATGTGGTCTGTTGGCTGCATATTTGCTGAACTTGTGACCAACCAAGCAAT 832 Query 800 CTTTCAGGGAGACTCTGAGCTCCAACAACTCCTCCATATTTTCAAGTTGTTCGGGACACC 859 ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 833 CTTTCAGGGAGACTCTGAGCTCCAACAGCTCCTCCATATTTTCAAGTTGTTTGGGACACC 892 Query 860 CAATGAAGAAATGTGGCCAGGAGTGAGCACACTCAAGAACTGGCATGAATACCCACAGTG 919 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 893 CAATGAAGAAATGTGGCCAGGAGTGAGCACACTCAAGAACTGGCATGAATACCCACAGTG 952 Query 920 GAAACCGTCGACTCTCTCCTCAGTTGTTCCAAACCTCGACGAGGCTGGAATTGATCTTCT 979 |||||| |||||||| ||||| | ||||||||||||||||||||||||| |||||||||| Sbjct 953 GAAACCATCGACTCTATCCTCTGCTGTTCCAAACCTCGACGAGGCTGGAGTTGATCTTCT 1012 Query 980 ATCTAAAATGCTGCAGTACGAGCCAGCGAAACGAATCTCAGCGAAGATGGCTATGGAGCA 1039 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1013 ATCTAAAATGCTGCAGTACGAGCCAGCGAAACGAATCTCAGCAAAGATGGCTATGGAGCA 1072 Query 1040 TCCATACTTTGATGATCTGCCAGAAAAGTCCTCCCTCTAAGGATTTAAG-TCGTCAGTTA 1098 ||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||| Sbjct 1073 TCCTTACTTTGATGATCTGCCAGAAAAGTCCTCTCTCTAAGGATTTAAAATCTTCAGTTA 1132 Query 1099 GTATCTTTCCCAGTTTTATG-TTTTTCTTGTTTTGCTTCTTTCAAGCATATCTCTAGTGT 1157 |||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 1133 GTATCTTTCCAAGTTTTATGGTTTTTCTAGTTTTGCTTCTTTCAAGCATATCTCTAGTGT 1192 Query 1158 GCTGCTTCCCAACTCTATGAATCATCACTTCTCATT-GTTATAATAT--CACCTCTGGTT 1214 |||||||||| |||||||||||||| ||| || || | ||||||| ||| |||| || Sbjct 1193 GCTGCTTCCCC-CTCTATGAATCATC-CTT-TCTTTAGC-ATAATATATCACTTCTGATT 1248 Query 1215 GCTGTTTCTTTCTA 1228 | |||||||||||| Sbjct 1249 GTTGTTTCTTTCTA 1262 Score = 56.5 bits (30), Expect = 6e-07 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 1 TGAATTTCGAAAAATCAGTCCGTTGTGAAA 30 |||||||||||||||||||||||||||||| Sbjct 1 TGAATTTCGAAAAATCAGTCCGTTGTGAAA 30 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61345065990 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5