BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476812
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76540.1 | Symbols: CDKB2;1 | cyclin-dependent kinase B2;1 |... 1823 0.0
> AT1G76540.1 | Symbols: CDKB2;1 | cyclin-dependent kinase B2;1
| chr1:28720328-28722521 REVERSE LENGTH=1338
Length=1338
Score = 1823 bits (987), Expect = 0.0
Identities = 1143/1214 (94%), Gaps = 28/1214 (2%)
Strand=Plus/Plus
Query 31 TCTCATTTAATTATATAACCGATCTACACTTTG-T-T-------TTCACTTTCCCAACAA 81
|||||||||||||||||||| |||||||||||| | | ||||||||||||| ||
Sbjct 61 TCTCATTTAATTATATAACCTATCTACACTTTGATCTCCGACAATTCACTTTCCCAATAA 120
Query 82 GAACCAACTgagagacagagagagcgccggagaagaagaattttagagagagagCGATGG 141
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GAACCAACTGAGAG--AGAGAGAGCGCCGGAGAAGAAGAATTTT----AGAGAGCGATGG 174
Query 142 ACGAGGGAGTTATAGCAGTTTCCGCCATGGATGCATTT-GAGAAGCTTGAGAAAGTTGGG 200
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 175 ACGAGGGAGTTATAGCAGTTTCCGCCATGGATGC-TTTCGAGAAGCTTGAGAAAGTTGGT 233
Query 201 GAAGGGACGTACGGGAAAGTTTACAGAGCCAGAGAGAAAGCTACCGGAAAAATCGTCGCT 260
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 234 GAAGGGACATACGGGAAAGTTTACAGAGCCAGAGAGAAAGCTACCGGGAAAATCGTCGCT 293
Query 261 CTCAAGAAGACGCGTCTCCATGAGGACGAAGAAGGCGTTCCTTCCACCACTCTTCGTGAG 320
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 294 CTAAAGAAGACGCGTCTCCATGAGGACGAAGAAGGCGTTCCTTCCACCACTCTCCGCGAG 353
Query 321 ATCTCCATCTTGCGCATGCTTGCTCGTGATTCC-CACATCGTCAGGTTGATGGATGTTAA 379
|||||||| ||||| ||||| |||||||| ||| ||| |||||||||| |||||||||||
Sbjct 354 ATCTCCATTTTGCGAATGCTCGCTCGTGA-TCCTCACGTCGTCAGGTTAATGGATGTTAA 412
Query 380 GCAAGGACTAAGCAAAGAAGGCAAAACTGTACTGTACCTGGTTTTTGAATACATGGACAC 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GCAAGGACTAAGCAAAGAAGGCAAAACTGTACTGTACCTGGTTTTTGAATACATGGACAC 472
Query 440 TGATGTCAAGAAATTCATCAGAAGTTTCCGTAGCACTGGCGAGAACATTCCAACCCAAAC 499
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 473 TGATGTCAAGAAATTCATCAGAAGTTTCCGTAGCACTGGCAAGAACATTCCAACCCAAAC 532
Query 500 TATCAAGAGCTTGATGTACCAACTATGTAAAGGAATGGCATTCTGTCATGGCCACGGGAT 559
|||||||||||||||||| |||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 533 TATCAAGAGCTTGATGTATCAACTATGCAAAGGTATGGCATTCTGCCATGGTCACGGGAT 592
Query 560 ATTGCACAGAGATCTCAAGCCTCACAATCTCTTGATGGATCCCAAGACAATGAGGCTCAA 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATTGCACAGAGATCTCAAGCCTCACAATCTCTTGATGGATCCCAAGACAATGAGGCTCAA 652
Query 620 AATAGCAGATCTTGGTTTAGCCAGAGCCTTCACTCTGCCAATGAAGAAGTATACCCATGA 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AATAGCAGATCTTGGTTTAGCCAGAGCCTTCACTCTGCCAATGAAGAAGTATACCCATGA 712
Query 680 GATATTAACTCTATGGTATAGAGCTCCAGAAGTTCTTCTTGGGGCCACCCATTACTCTAC 739
|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 713 GATATTAACTCTTTGGTATAGAGCTCCAGAGGTTCTTCTTGGTGCCACCCATTACTCTAC 772
Query 740 AGCTGTGGATATGTGGTCTGTTGGCTGCATCTTTGCTGAACTTGTGACCAACCAAGCAAT 799
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 773 AGCTGTGGATATGTGGTCTGTTGGCTGCATATTTGCTGAACTTGTGACCAACCAAGCAAT 832
Query 800 CTTTCAGGGAGACTCTGAGCTCCAACAACTCCTCCATATTTTCAAGTTGTTCGGGACACC 859
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 833 CTTTCAGGGAGACTCTGAGCTCCAACAGCTCCTCCATATTTTCAAGTTGTTTGGGACACC 892
Query 860 CAATGAAGAAATGTGGCCAGGAGTGAGCACACTCAAGAACTGGCATGAATACCCACAGTG 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 CAATGAAGAAATGTGGCCAGGAGTGAGCACACTCAAGAACTGGCATGAATACCCACAGTG 952
Query 920 GAAACCGTCGACTCTCTCCTCAGTTGTTCCAAACCTCGACGAGGCTGGAATTGATCTTCT 979
|||||| |||||||| ||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 953 GAAACCATCGACTCTATCCTCTGCTGTTCCAAACCTCGACGAGGCTGGAGTTGATCTTCT 1012
Query 980 ATCTAAAATGCTGCAGTACGAGCCAGCGAAACGAATCTCAGCGAAGATGGCTATGGAGCA 1039
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1013 ATCTAAAATGCTGCAGTACGAGCCAGCGAAACGAATCTCAGCAAAGATGGCTATGGAGCA 1072
Query 1040 TCCATACTTTGATGATCTGCCAGAAAAGTCCTCCCTCTAAGGATTTAAG-TCGTCAGTTA 1098
||| ||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1073 TCCTTACTTTGATGATCTGCCAGAAAAGTCCTCTCTCTAAGGATTTAAAATCTTCAGTTA 1132
Query 1099 GTATCTTTCCCAGTTTTATG-TTTTTCTTGTTTTGCTTCTTTCAAGCATATCTCTAGTGT 1157
|||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1133 GTATCTTTCCAAGTTTTATGGTTTTTCTAGTTTTGCTTCTTTCAAGCATATCTCTAGTGT 1192
Query 1158 GCTGCTTCCCAACTCTATGAATCATCACTTCTCATT-GTTATAATAT--CACCTCTGGTT 1214
|||||||||| |||||||||||||| ||| || || | ||||||| ||| |||| ||
Sbjct 1193 GCTGCTTCCCC-CTCTATGAATCATC-CTT-TCTTTAGC-ATAATATATCACTTCTGATT 1248
Query 1215 GCTGTTTCTTTCTA 1228
| ||||||||||||
Sbjct 1249 GTTGTTTCTTTCTA 1262
Score = 56.5 bits (30), Expect = 6e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1 TGAATTTCGAAAAATCAGTCCGTTGTGAAA 30
||||||||||||||||||||||||||||||
Sbjct 1 TGAATTTCGAAAAATCAGTCCGTTGTGAAA 30
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5