BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476817
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76590.1 | Symbols: | PLATZ transcription factor family pro... 1399 0.0
> AT1G76590.1 | Symbols: | PLATZ transcription factor family protein
| chr1:28740691-28742207 FORWARD LENGTH=1235
Length=1235
Score = 1399 bits (757), Expect = 0.0
Identities = 908/976 (93%), Gaps = 30/976 (3%)
Strand=Plus/Plus
Query 1 ATTATCGTGACCGACTTC-AAAAACAAGAAAAACCTCAATTTCTCTTTTTTCAGCTATCT 59
|||||||||||||||||| |||||||||||||||||||| ||||| |||||||| ||
Sbjct 26 ATTATCGTGACCGACTTCAAAAAACAAGAAAAACCTCAACTTCTC-TTTTTCAG----CT 80
Query 60 ATAGCCGCCGCCTCCT-CCACTAAACTCAAATCCTCTCTTAGTCTTTTCAATCAAATCTT 118
|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 81 ATAGCCGCCGCCTCCTCCCACTAAACTCAAATCCTCTCATAGTCTTTTCAATCAAATC-T 139
Query 119 CCTCTTCTTCGCTGTTGAAGCTGGCTATCAAAACTCACAATAAC--T-------ATGATG 169
||||||||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 140 GCTCTTCTTCACTGTTGAAGCTGGCTATCAAAACTCACAATAACTATGGGACCGATGATG 199
Query 170 ATGAGAGCAGAAGAAGATAACTACAACAATCTAAGTCCTCCACCATGGTTAATCCCAATG 229
|||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||
Sbjct 200 ATGAGAGCAGAAGAAGATAACT---ACAATCTAAATCCTCCACCATGGCTAATCCCAATG 256
Query 230 CTAAAAGCAAACTACTTCGTCCCATGTTCAATCCACGCTTCTTCCAACAAAAGCGAATGC 289
|||| ||||||||||||| |||| |||||||||||||| |||||||||||||||| |||
Sbjct 257 CTAAGAGCAAACTACTTCATCCCTTGTTCAATCCACGCCGCTTCCAACAAAAGCGAGTGC 316
Query 290 AACATGTTCTGTCTTGATTGCAATTC-GCATGCCTTTTGCTCTTACTGTTTGCTCACTCA 348
||||||||||||||||| || ||| | | ||||||||||||||||||||||||| |||
Sbjct 317 AACATGTTCTGTCTTGACTGTTCTTCTG-AGGCCTTTTGCTCTTACTGTTTGCTCAATCA 375
Query 349 CAGAAACCATCGTGTCCTTCAGATACGGAGATCATCGTACCACAACGTTGTGAGGGTAAA 408
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 376 CAGAAACCATCGTGTCCTCCAGATACGGAGATCATCGTACCACAACGTTGTGAGAGTAAA 435
Query 409 CGAGATTCAGAAGTTCATAGACATATCTTGTGTTCAGACATATATAATCAACAGCGCAAG 468
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 CGAGATTCAGAAGTACATAGACATATCTTGTGTTCAGACATATATAATCAACAGCGCAAG 495
Query 469 AATCGTGTTCTTGAACGAACGTCCTCAGCCAAGAATCGGCAAAGGAGTCACCAATACTTG 528
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 GATCGTTTTCTTGAACGAACGTCCTCAGCCAAGAATCGGCAAAGGAGTCACCAATACTTG 555
Query 529 TGAAATCTGTTGCAGAAGCCTTCTTGATTCTTTCCGTTTCTGCTCTCTCGGTTGCAAACT 588
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 556 TGAAATCTGTTGCAGAAGCCTTCTCGATTCTTTCCGTTTCTGCTCTCTCGGTTGCAAACT 615
Query 589 TGGAGGAATGAAGCGTGATCCAAGTCTAACCTTCTCTTTGAGAGGGAAGCATGGAAGAGA 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 TGGAGGAATGAAGCGTGATCCAAGTCTAACCTTCTCTTTGAGAGGGAAGCATGGAAGAGA 675
Query 649 GTACGAAGGTGAGTGGGAATCTGATGAAGCGACCACACCAACTAAGATACGCAAGACTTC 708
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 676 GTACGAAGGTGAGTGGGAATCTGATGAAGCGACTACACCAACTAAGATACGCAAGACATG 735
Query 709 TGCTTTCAACCGTCTGATGAGTGGTCTTTCCATCTCCACCGTTAAATGTGATTACTTGTC 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 TGCTTTCAACCGTCTGATGAGTGGTCTTTCCATCTCCACCGTTAAATGTGATTACTTGTC 795
Query 769 AGGAGATCAAC-GCTCCTCGAGCTCCGGTGATGAGAGCGGTTTTAATCTTTCTCCGGGGA 827
||||||||||| | || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 796 AGGAGATCAACCG-TCTTCGAGCTCCGGTGATGAGAGCGGTTTTAAACTTTCTCCGGGGA 854
Query 828 CGCCGCCGATATATAATCACCGGAATTCAAGCAGGCGGAAGGGCGTGCCACACCGTGCTC 887
| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 855 CACCGCCGATATATAATCACCGGAATTCAAGTAGACGGAAGGGCGTCCCACACCGTGCTC 914
Query 888 CTTTCTAGAATTAATATACTAACGGAAGCTAATTATTATA-TATAG-T-ATAGAAAATAC 944
||||||| |||||||| |||||||||||||||||| ||| | ||| | |||||||||
Sbjct 915 CTTTCTAAAATTAATA--CTAACGGAAGCTAATTAT-ATAGTGTAGATTATAGAAAATGT 971
Query 945 GGTCGTTATGTTGTAA 960
||| ||||||||||||
Sbjct 972 GGTTGTTATGTTGTAA 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56475613125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5