BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476818
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1086 0.0
AT1G21010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 261 8e-69
> AT1G76600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21010.1);
Has 220 Blast hits to 220 proteins in 14 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:28746888-28747845 FORWARD LENGTH=958
Length=958
Score = 1086 bits (588), Expect = 0.0
Identities = 785/870 (90%), Gaps = 53/870 (6%)
Strand=Plus/Plus
Query 1 ATGGGTCTTTGTGTATCTGTTAATCGAAACGAGTACGACTCTTCGCCGTCGACGGCTAAA 60
||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 88 ATGGGTCTTTGTGTATCTGTTAATCGAAACGAGTACGTTTCTTCGTCGACGACGGCTAAA 147
Query 61 ATCGTGACAATTAACGGCGATCTCCGTGAATACGATGTACCGGTGTTAGCATCTCAGGTT 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 ATCGTAACAATTAACGGCGATCTCCGTGAATACGATGTACCGGTGTTAGCATCTCAGGTT 207
Query 121 CTGGAATCTGAATCGACGTCTTCTTCATCATCGTCTTCCTCTCGATCTTCTTCTTATTTT 180
|||||||||||||||||||||||||| | || || | | || ||||||||||||||||
Sbjct 208 CTGGAATCTGAATCGACGTCTTCTTC-T--TCATCAT-C-ATC-ATCTTCTTCTTATTTT 261
Query 181 CTATGTAATTCCGATTCTCTCTACTACGACGATTTTATCCCGGCGATTGAATCTGATGAG 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 262 CTATGTAATTCCGATTCTCTCTACTACGACGATTTTATCCCAGCGATTGAATCTGATGAG 321
Query 241 ATTCTTCAAGCGGATCAAATCTATTTCGTTCTTCCAATCTCTAAACGACAATACCGTCTC 300
|||||||||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 322 ATTCTTCAAGCGAATCAGATCTATTTCGTCCTTCCCATCTCTAAACGACAATACCGTCTC 381
Query 301 TCGGCGTCGGATATGGCGGCTCTCGCCGTGAAAGCCAGCGTCGCGATTGAGAAATCAGCG 360
|| || |||||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 382 TCTGCCTCGGATATGGCGGCTCTCGCTGTAAAAGCCAGCGTCGCGATTGAGAAAGCAGCG 441
Query 361 GGGAAGAAAAATCGTCGTCGTAGAAGCAGCGGAAGAATATCGCCGGTTGTGACGTTGAAT 420
|||||||||||||| |||||||| | ||||||||||| || ||||||||||||||||||
Sbjct 442 GGGAAGAAAAATCGCCGTCGTAG-A--AGCGGAAGAATCTCTCCGGTTGTGACGTTGAAT 498
Query 421 CAGCCTAACGATAATCGGATCGCCGCCGTGAACAACAGAATTGGAGGCGAAGCAACG-AT 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 499 CAGGCTAACGATAATCGGATCGCCGCCGTGAACAACAGAATTGGAGGCGAAGCAACGAAT 558
Query 480 -T--T--TGCAAAAAGGAAAGTTGCCGAATAGAACGACGCCGTTTAAAGATACAACCGGT 534
| | |||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 559 ATGATGATGCAAAAAGGAAAGTTACCGAATAGAACGACGCCGTTTAAAGATACAAACGGT 618
Query 535 TATTCCCGGTCTGGTTCGGTTAGGAAATTGAAAAGATATACGTCTGGTCGAGCTAAATTG 594
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TATTCTCGGTCTGGTTCGGTTAGGAAATTGAAAAGATATACGTCTGGTCGAGCTAAATTG 678
Query 595 GCGGTTCGATCGTTTAGACTGAGACTCTCTACTATATACGAAGGCTCTTCGTTTAATTAG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GCGGTTCGATCGTTTAGACTGAGACTCTCTACTATATACGAAGGCTCTTCGTTTAATTAG 738
Query 655 -----T-A-----C-A---tt---tt-ttt--GTTTGTTCTTGTTATCGTTACGAAAA-T 692
| | | | || || ||| |||| || |||||||||||||||||| |
Sbjct 739 AGCGATTATAAAACTAAGATTACATTCTTTTTGTTT-TTGTTGTTATCGTTACGAAAAAT 797
Query 693 GTTTGTGTAATG-T-TT-CAAAATGATCTGTAAATTACAGCTTTCACTTTCGCTATTGTG 749
|||||||||||| | || ||| |||||||||||||||||||||||||||| ||| | ||
Sbjct 798 GTTTGTGTAATGCTGTTTCAATATGATCTGTAAATTACAGCTTTCACTTT-GCT-T-GT- 853
Query 750 ATATATTTTCCCGTTTTGTTATGTAATGTGTACTTATATTTTATAATTATAGCTAAGAAA 809
|||| ||| ||| ||||||||||| ||||||||||||||||||||| ||||||
Sbjct 854 ATAT-TTT-CCCATTTTGTTATGTCATGTGTACTTATATTTTATAAG-ATAGCTT----- 905
Query 810 CAAAAATCAAATCTCAGTCACACTGTTGCG 839
|||||||||||| |||||||||||||||||
Sbjct 906 CAAAAATCAAATTTCAGTCACACTGTTGCG 935
> AT1G21010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 14 growth stages;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G76600.1); Has 206 Blast hits to 206 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr1:7346156-7346973 FORWARD LENGTH=818
Length=818
Score = 261 bits (141), Expect = 8e-69
Identities = 303/379 (80%), Gaps = 20/379 (5%)
Strand=Plus/Plus
Query 50 CGACGGCT-AAAATCGTGACAATTAACGGCGATCTCCGTGAATACGATGTACCGGTGTTA 108
|||||| | || |||||||| ||||||||||||||||||||||| |||| |||||| ||
Sbjct 130 CGACGG-TGAAGATCGTGACGGTTAACGGCGATCTCCGTGAATACAATGTTCCGGTGATA 188
Query 109 GCATCTCAGGTTCTGGAATCTGAAT---CGAC-GTCTTCTTCATCATCGTCTTCCTCTCG 164
|||||||| ||| ||||| |||||| || | | ||| |||||| |||||||||||| |
Sbjct 189 GCATCTCAAGTTTTGGAAGCTGAATCAGCGGCAG-CTTATTCATCTTCGTCTTCCTCTAG 247
Query 165 ATCTTCTTCTTATTTTC-TATGTAATTCCGATTCTCTCTACTACGACGATTTTATCCCGG 223
| ||||||| || |||| | || |||| ||||||||||||||||||||||| || ||||
Sbjct 248 ACCTTCTTCATA-TTTCATCTGCGATTCAGATTCTCTCTACTACGACGATTTCATACCGG 306
Query 224 CGATTGAATCTGATGAGATTCTTCAAGCGGATCAAATCTATTTCGTTCTTCCAATCTCTA 283
|||| |||| || ||| ||||| ||||| || ||||| |||||||| || || ||||
Sbjct 307 CGATCAAATCGGAAGAGCCGCTTCAGGCGGACCAGATCTACTTCGTTCTCCCGATTTCTA 366
Query 284 AACGACAATA-CCGTCTCTCGGCGTCGGATATGGCGGCTCTCGCCGTGAAAGCCAGCGTC 342
|||| | | | ||| | |||||||||||||||||||||||||||| ||||| ||||||
Sbjct 367 AACGTC-AGAGTCGTTTAACGGCGTCGGATATGGCGGCTCTCGCCGTTAAAGCAAGCGTC 425
Query 343 GCGATTGAGAAATCAGCGGGGAAGAAA-AATCGTCGTCGTAG-AAGCAGCG-GAAGAATA 399
||||| | ||| | | | |||||| |||| |||||| | ||| || | || ||||
Sbjct 426 GCGATACA-AAA-CT-CTGTTAAGAAAGAATC-TCGTCGGCGTAAGAAG-GTGA-GAATC 479
Query 400 TCGCCGGTTGTGACGTTGA 418
|| |||||| ||| |||||
Sbjct 480 TCTCCGGTTATGATGTTGA 498
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40890595658
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5