BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476819 Length=826 Score E Sequences producing significant alignments: (Bits) Value AT1G76610.1 | Symbols: | Protein of unknown function, DUF617 |... 1158 0.0 > AT1G76610.1 | Symbols: | Protein of unknown function, DUF617 | chr1:28750988-28751851 FORWARD LENGTH=864 Length=864 Score = 1158 bits (627), Expect = 0.0 Identities = 743/799 (93%), Gaps = 8/799 (1%) Strand=Plus/Plus Query 31 AAAAAATGAGAACGATTATGGATTTAGGAAAACAAAAAAGTCATCTACAAATCATTGATT 90 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 57 AAAAAATGAGAACGATTATCGATTTAGGAAAACAAAAAAGTCATCTACAAATCATTGATT 116 Query 91 CTCCGACGAACGTTGACTGTGCCCGTGAAGTCGGACTCCGAAGAACCCTCCGTTCACTCA 150 |||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| Sbjct 117 CTCCGACGAACGTTGACTGTACTCGTGAAGTCGGACTTCGAAGAACCCTCCGTTCACTCA 176 Query 151 TCGAGTGGGTAATCCCATATTGTTGCACGTACCAACCTCCTCCTTCCGACCAAAACGACA 210 | ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 177 TGGAGTGCGTAATCCCATATTGTTGCACGTACCAACCTCCTCCCACCGACCAAAACGACA 236 Query 211 CCGTCTCTGTCTCTTCATTCACTTCTTCCTCCGACCAATCTGGCGTCGTCGTAACCGGCA 270 |||||||||||||||||| ||||||||||||||||||| | ||||| ||||| || || | Sbjct 237 CCGTCTCTGTCTCTTCATCCACTTCTTCCTCCGACCAAACAGGCGTTGTCGTCACGGGTA 296 Query 271 CTTTCTTTGGTCACCGCCGTGGCCATGTCAGCTTCTGCCTCCAAGAAGATACTCGTCCCT 330 |||||| ||||||||| |||||||| || ||||||||||||||||| || |||||||||| Sbjct 297 CTTTCTATGGTCACCGACGTGGCCACGTTAGCTTCTGCCTCCAAGACGACACTCGTCCCT 356 Query 331 CCTCTCCGCCTCTTCTCCTCCTCGAGCTAGCCGTTCCCACGGCGGCTCTCGCTCGGGAGA 390 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 357 CCTCTCCACCTCTTCTCCTCCTCGAGCTAGCCGTTCCCACGGCGGCTCTCGCTCGAGAGA 416 Query 391 TGGAAGAGGGCTTTCTCCGCATAGCTCTCCGGAGCAAAAGCAACCGCCGGTCTAGTATCT 450 |||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||| Sbjct 417 TGGAAGAGGGTTTTCTCCGTATCGCTCTCCGGAGCAAAAGCAACCGACGGTCTAGTATCT 476 Query 451 TTAACGTTCCGGTTTGGTCTATGTACTGCAACGGCAAGAAAGTT-GGATTTGCGGTGAGG 509 |||||||||| ||||||||||||||||||||||||| |||| || ||||||||||||||| Sbjct 477 TTAACGTTCCAGTTTGGTCTATGTACTGCAACGGCA-GAAAATTTGGATTTGCGGTGAGG 535 Query 510 AGAGAAACGACTGAAAACGACGTCGGATTTCTCAGGCTGATGCAGTCTGTTTCCGTTGGC 569 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 536 AGAGAAACCACTGAAAACGACGTCGGATTTCTCCGGCTGATGCAGTCTGTTTCCGTTGGC 595 Query 570 GCAGGGGTGATTCCGAACGGCGAGACGTTGTATTTGAGAGCAAAGTTCGAGCGAGTCACG 629 |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 596 GCAGGGGTGATTCCAAATGGCGAGACGTTGTATTTGAGAGCAAAGTTCGAGCGAGTCACG 655 Query 630 GGATCGAGTGACTTGGAATCGTTTCACATGGTAAACCAAGGGGGTGGTTATGGACAGGAG 689 ||||| ||||||| |||||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct 656 GGATCAAGTGACTCGGAATCGTTTCATATGGTTAACCAAGGAGGTGGTTATGGGCAGGAA 715 Query 690 CTTAGCATTTTTCTTTCAAGATCGTGAA-GTAATTAGGGAAAATCTAGTTATGATCGATG 748 |||||||||||||||||||||||||||| ||||||| | |||||||||||||||| |||| Sbjct 716 CTTAGCATTTTTCTTTCAAGATCGTGAAAGTAATTAAGAAAAATCTAGTTATGATGGATG 775 Query 749 TTATTTTTAATGTTCGTTTT-TGTGTATGTTACTAGTTACGACTTACGAAATCGTTTTTA 807 |||||| ||||||||||||| | | | ||| | | ||||||||||| || |||||||||| Sbjct 776 TTATTTGTAATGTTCGTTTTATAT-TGTGT-A-T-GTTACGACTTAGGAGATCGTTTTTA 831 Query 808 CGAACATTATAAATATAAA 826 ||||||||||||||||||| Sbjct 832 CGAACATTATAAATATAAA 850 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40237551747 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5