BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476819
Length=826
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76610.1 | Symbols: | Protein of unknown function, DUF617 |... 1158 0.0
> AT1G76610.1 | Symbols: | Protein of unknown function, DUF617
| chr1:28750988-28751851 FORWARD LENGTH=864
Length=864
Score = 1158 bits (627), Expect = 0.0
Identities = 743/799 (93%), Gaps = 8/799 (1%)
Strand=Plus/Plus
Query 31 AAAAAATGAGAACGATTATGGATTTAGGAAAACAAAAAAGTCATCTACAAATCATTGATT 90
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 57 AAAAAATGAGAACGATTATCGATTTAGGAAAACAAAAAAGTCATCTACAAATCATTGATT 116
Query 91 CTCCGACGAACGTTGACTGTGCCCGTGAAGTCGGACTCCGAAGAACCCTCCGTTCACTCA 150
|||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||
Sbjct 117 CTCCGACGAACGTTGACTGTACTCGTGAAGTCGGACTTCGAAGAACCCTCCGTTCACTCA 176
Query 151 TCGAGTGGGTAATCCCATATTGTTGCACGTACCAACCTCCTCCTTCCGACCAAAACGACA 210
| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 177 TGGAGTGCGTAATCCCATATTGTTGCACGTACCAACCTCCTCCCACCGACCAAAACGACA 236
Query 211 CCGTCTCTGTCTCTTCATTCACTTCTTCCTCCGACCAATCTGGCGTCGTCGTAACCGGCA 270
|||||||||||||||||| ||||||||||||||||||| | ||||| ||||| || || |
Sbjct 237 CCGTCTCTGTCTCTTCATCCACTTCTTCCTCCGACCAAACAGGCGTTGTCGTCACGGGTA 296
Query 271 CTTTCTTTGGTCACCGCCGTGGCCATGTCAGCTTCTGCCTCCAAGAAGATACTCGTCCCT 330
|||||| ||||||||| |||||||| || ||||||||||||||||| || ||||||||||
Sbjct 297 CTTTCTATGGTCACCGACGTGGCCACGTTAGCTTCTGCCTCCAAGACGACACTCGTCCCT 356
Query 331 CCTCTCCGCCTCTTCTCCTCCTCGAGCTAGCCGTTCCCACGGCGGCTCTCGCTCGGGAGA 390
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 357 CCTCTCCACCTCTTCTCCTCCTCGAGCTAGCCGTTCCCACGGCGGCTCTCGCTCGAGAGA 416
Query 391 TGGAAGAGGGCTTTCTCCGCATAGCTCTCCGGAGCAAAAGCAACCGCCGGTCTAGTATCT 450
|||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 417 TGGAAGAGGGTTTTCTCCGTATCGCTCTCCGGAGCAAAAGCAACCGACGGTCTAGTATCT 476
Query 451 TTAACGTTCCGGTTTGGTCTATGTACTGCAACGGCAAGAAAGTT-GGATTTGCGGTGAGG 509
|||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 477 TTAACGTTCCAGTTTGGTCTATGTACTGCAACGGCA-GAAAATTTGGATTTGCGGTGAGG 535
Query 510 AGAGAAACGACTGAAAACGACGTCGGATTTCTCAGGCTGATGCAGTCTGTTTCCGTTGGC 569
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 536 AGAGAAACCACTGAAAACGACGTCGGATTTCTCCGGCTGATGCAGTCTGTTTCCGTTGGC 595
Query 570 GCAGGGGTGATTCCGAACGGCGAGACGTTGTATTTGAGAGCAAAGTTCGAGCGAGTCACG 629
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GCAGGGGTGATTCCAAATGGCGAGACGTTGTATTTGAGAGCAAAGTTCGAGCGAGTCACG 655
Query 630 GGATCGAGTGACTTGGAATCGTTTCACATGGTAAACCAAGGGGGTGGTTATGGACAGGAG 689
||||| ||||||| |||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 656 GGATCAAGTGACTCGGAATCGTTTCATATGGTTAACCAAGGAGGTGGTTATGGGCAGGAA 715
Query 690 CTTAGCATTTTTCTTTCAAGATCGTGAA-GTAATTAGGGAAAATCTAGTTATGATCGATG 748
|||||||||||||||||||||||||||| ||||||| | |||||||||||||||| ||||
Sbjct 716 CTTAGCATTTTTCTTTCAAGATCGTGAAAGTAATTAAGAAAAATCTAGTTATGATGGATG 775
Query 749 TTATTTTTAATGTTCGTTTT-TGTGTATGTTACTAGTTACGACTTACGAAATCGTTTTTA 807
|||||| ||||||||||||| | | | ||| | | ||||||||||| || ||||||||||
Sbjct 776 TTATTTGTAATGTTCGTTTTATAT-TGTGT-A-T-GTTACGACTTAGGAGATCGTTTTTA 831
Query 808 CGAACATTATAAATATAAA 826
|||||||||||||||||||
Sbjct 832 CGAACATTATAAATATAAA 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40237551747
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5