BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476820
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76620.1 | Symbols: | Protein of unknown function, DUF547 |... 2784 0.0
AT1G21060.1 | Symbols: | Protein of unknown function, DUF547 |... 510 2e-143
> AT1G76620.1 | Symbols: | Protein of unknown function, DUF547
| chr1:28756521-28759297 FORWARD LENGTH=2016
Length=2016
Score = 2784 bits (1507), Expect = 0.0
Identities = 1860/2018 (92%), Gaps = 73/2018 (4%)
Strand=Plus/Plus
Query 1 TTGTGGAGTAAAAACTGGGTTT--TACACTTCACTTGCGTCTGAATACCCGGGGaaa-aa 57
|||||||||||||||||||||| ||||||||||||| ||| |||||||||| ||| ||
Sbjct 6 TTGTGGAGTAAAAACTGGGTTTCACACACTTCACTTGCCTCTCAATACCCGGGAAAACAA 65
Query 58 aaTGTCGGTTTCACTTGCTAATTTTCTTGGAAAGTTACAAAGTCTTTCCCTTTTCAGGTT 117
|||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 66 AATGTCGGTTTCACTTGCTACTTTTCCCGGAAAGTTACAAAGTCATTCCCTTTTCAGGTT 125
Query 118 TTGAAGTCACACTAACATAAAGAGTAGAAGaaaaaaaaaGGCTTGGAGCTTTA-tttttg 176
|||||||||| |||||| | || ||||||| ||||||||||||||||||| ||||||
Sbjct 126 GTGAAGTCACATTAACAT--A-AG-AGAAGAAGCAAAAAGGCTTGGAGCTTTATTTTTTG 181
Query 177 cttttttCTTAATTTCTTCTAGAAAACATGATCCTGAGCTTCCGAGCAAAATTCTTTTAA 236
||||||| || ||||||||||||||||||||| |||| ||||||| || ||||||||||
Sbjct 182 CTTTTTTTTTTCTTTCTTCTAGAAAACATGATCTTGAGTTTCCGAGTAAGATTCTTTTAA 241
Query 237 AGAGAG--T-----G--TGAG-AAAATGATGGCTCTGATGAATTGTGCATATTCAtcttc 286
| |||| | | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 242 AAAGAGTTTGCAAAGAACGAGAAAAATGATGGCTCTGATGAATTGTGCATATTCATCTTC 301
Query 287 ttcttcgtcttcttcttcttcctctccca------c-t--tcttcttcttcATATTCTCC 337
|||||||||||| ||| |||||||||||| | | ||||||||||||||||||||
Sbjct 302 TTCTTCGTCTTCGTCTACTTCCTCTCCCACTTCTTCATCATCTTCTTCTTCATATTCTCC 361
Query 338 GAGGAACAGAGAGAACATGGTTTTGCAGAGTGTAGTTGATGTGTCACCTTCAAGTTTCTC 397
||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 362 AAGGAACAGAGAGAGCATGTTTTTGCAGAGTGTAGTTGATGCGTCACCTTCAAGTTTCTC 421
Query 398 TTCCGACAGAAAATCTATTTTACCAATTGAGAAGACTTTAATAACTCACCAAAATTCCAG 457
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 422 TTCCGACAGAAAATCTATTTTACCAATTGAGAAGACTTTAATAAGACATCAGAATTCCAG 481
Query 458 TCTCTGCTTGATCCCAAAGTCTTCAGAAGAGTTGAAGAAGGAAATTGCATCAATTGAGAT 517
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 482 TCTCTGCTTGATCCCAAAGTCTTCAGAAGAATTGAAGAAGGAGATTGCATCAATTGAGAT 541
Query 518 AGAGATTCTACACATGGAACGATATCTCTTATCTCTTTACAGGAAATCTTTTGAACAGCA 577
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||
Sbjct 542 AGAGATTCTACACATGGAACGATATCTCTTATCTCTTTACAGAAAATCATTTGAGCAACA 601
Query 578 ACTTCCTAATTCCTACTCTAAACTCTCTGCTACTACTACTAACTTTCCTCGTTCTGTGAC 637
|||||||||||||| |||||| ||||||| | |||||||| ||| ||||||||||||||
Sbjct 602 ACTTCCTAATTCCTTCTCTAATCTCTCTG-T--TACTACTACCTTACCTCGTTCTGTGAC 658
Query 638 TACTTCACGAACATCACTAACTCATCACTATCAAGCTTACCAAAAACCAATTTCATATCC 697
|||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 659 TACTTCACCAACATCACTAACTCAT---TATCAAGCTTACCAAAAACCAATCTCATATCC 715
Query 698 TCGGAGTTTCAACACTAGTTTAAAAGCCTTATCTTCAAGGGAAGGGACTAGAGTAGTTTG 757
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TCGGAGTTTCAACACTAGTTTAAAAGCCTTATCTTCAAGGGAAGGGACTAGAGTAGTTTC 775
Query 758 TGGTAATCACAGTCTTGGAGAGCTTCTAGGATCATCTCATATAGTTGATCATAGTAATC- 816
||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || |
Sbjct 776 TGGTACTCACAGTCTTGGAGAGCTTTTAGGATCATCTCATATAGTTGATCATAACAA-CT 834
Query 817 TCATAAACCCGAATAAACTCTCTGAAGATATCATGAGATGCATTTCTTCTGTGTATTGTA 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TCATAAACCCGAATAAACTCTCTGAAGATATCATGAGATGCATTTCTTCTGTGTATTGTA 894
Query 877 CACTTTCAAGAGGATCAACGAGTACCAATTCCACTTGTTTCCCTGCTTCTCCGGTTTCGT 936
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct 895 CACTTTCAAGAGGATCAACGAGTACCACTTCCACTTGTTTTCCTGCTTCTCCGGTTTCCT 954
Query 937 CATTGTCGAATGCCTCGACCATTTTCTCTTCCAAATCCAATTACTATGACGATAAATGGA 996
| | |||||||| ||||||||||||||||||| ||||| | || ||||||||||
Sbjct 955 C-----C-AATGCCTCAACCATTTTCTCTTCCAAATTTAATTA-T--GAAGATAAATGGA 1005
Query 997 GCTTGAATTGCGCGAGTGAGGATCATTTTCTGAATCACTGTCAAGATCAAGGCAATGTTT 1056
|||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1006 GCTTGAATGGCGCAAGTGAGGATCATTTTCTGAATCACTGTCAAGATCAAGACAATGTTT 1065
Query 1057 TGCCTTGTGGTGTTGTTGTGATAGAGGCTCTTAGAGTACATTTAGACGATGCTAGTTTCG 1116
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1066 TGCCTTGTGGTGTTGTTGTCATAGAGGCTCTTAGAGTACATTTAGACGATGGTAGTTTCG 1125
Query 1117 GTTACGCTGCTCTTATGCTGCAAAACTTCAGATCATTGGTTCAAAATCTTGAGAAAGTTG 1176
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1126 GTTACGCTGCTCTTATGCTTCAAAACTTCAGATCACTGGTTCAAAATCTTGAGAAAGTTG 1185
Query 1177 ATCCGAGTAGAATGAAACGCGAAGAGAAGCTCGCGTTTTGGATTAACATTCACAATGCTC 1236
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1186 ATCCGAGTAGAATGAAACGCGAAGAGAAGCTCGCGTTTTGGATAAACATTCACAATGCTC 1245
Query 1237 TTGTGATGCATGCTTACTTAGCTTATGGAACTCACAACCGCGCAAGAAACACATCGGTTT 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 TTGTGATGCATGCTTACTTAGCTTATGGAACTCACAACCGCGCAAGAAACACATCGGTTT 1305
Query 1297 TGAAGGCAGCTTATGATATTGGAGGCTATAGAATAAACCCGTT-TATCATCCAAAGCTCA 1355
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1306 TGAAGGCAGCTTATGATATTGGAGGCTATAGAATAAACCC-TTATATCATCCAAAGCTCA 1364
Query 1356 ATCTTAGGAATCAGACCTCATTACACATCACCATCACCTTTACTCCAAACTCTGTTTTCG 1415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 ATCTTAGGAATCAGACCTCATTACACATCACCATCACCTTTACTCCAAACTCTGTTTTCC 1424
Query 1416 CCTTCAAGAAAGTCGAAAACTTGCAGTGTTAGACACGTTTACGCATTGGAATACCCCGAG 1475
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1425 CCTTCAAGAAAGTCGAAAACTTGCAGTGTTAGACACATTTACGCATTGGAATACCCCGAG 1484
Query 1476 GCTTTAGCTCATTTCGCTATTTCTTCAGGGGCATTCACTGATCCTACGGTAGTTCGGGTT 1535
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1485 GCTTTAGCTCATTTCGCTATTTCTTCAGGGGCATTCACTGATCCTAC---AGTTCGAGTT 1541
Query 1536 TACACGGCGGATAGAATCTTCCGGGATCTAAGACAAGCTAAGCAAGAGTATATCAGAAGT 1595
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1542 TACACCGCGGATAGAATCTTCCGGGATCTAAGACAAGCGAAACAAGAGTATATCAGAAGT 1601
Query 1596 AATGTTCGTGTTTACAAAGGGACAAAGATTTGGTTGCCAAAGATCTTTCAGCATTATGTT 1655
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1602 AATGTTCGTGTTTACAAAGGGACAAAGATTTTGTTGCCAAAGATCTTTCAACATTATGTT 1661
Query 1656 AAAGACATGTCAATGGATGTGTCTAAGCTCATGGAAGCAACAGCTCAGTGTTTACCAGAA 1715
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1662 AAAGACATGTCAATGGATGTGTCTAAGCTCATGGAAGCAACATCTCAATGTTTACCAGAA 1721
Query 1716 GCTGCGAGGAAAATTGCTGAGAAATGTTTGAAGGAGAAGAAGAGTAAGAATTTTGAATGG 1775
| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1722 GATGCAAGGAAAATTGCTGAGAAATGTTTGAAAGAGAAGAAGAGTAAGAATTTTGAATGG 1781
Query 1776 TTACCGGAAAATTTGAGTTTCCGATATGTCATCGCCGGAGAATTGGTTGGAGCAAGTAAT 1835
||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||| |||
Sbjct 1782 TTACCGGAAAATTTGAGCTTCCGGTATGTTATCGCCGGAGAATTGGTCGGAGCAAGAAAT 1841
Query 1836 AAGACGTGAAGG-TTT-TT---GCC---T-T----------C-TC---ATGTGATTAAAT 1872
|||||||||||| ||| || | | | | || ||||||||||||
Sbjct 1842 AAGACGTGAAGGGTTTATTCAAGAAAAGTGTTTTTTTTTTGCCTCCTGATGTGATTAAAT 1901
Query 1873 AATTTGATTACAATTAGTGTTCAATTTCAGTTTTCTTTTTCAAGTGAGAAATTGTAAAAC 1932
||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1902 AATCTGATTACAATTAGTGTTCAATTTCATTTTT-TTTTTCAAGTGAGAAATTGTAAAAC 1960
Query 1933 CAGTGTTTGTTTGTATAATCTTAATAAACCGAGAACTA 1970
||||||||||||||||||||||||||||||||||||||
Sbjct 1961 CAGTGTTTGTTTGTATAATCTTAATAAACCGAGAACTA 1998
> AT1G21060.1 | Symbols: | Protein of unknown function, DUF547
| chr1:7371799-7374104 FORWARD LENGTH=1537
Length=1537
Score = 510 bits (276), Expect = 2e-143
Identities = 601/754 (80%), Gaps = 38/754 (5%)
Strand=Plus/Plus
Query 1068 GTTGTTGTGATAGAGGCTCTTAG-AGTACATTTAGACGATGCTAGTTTCGGTTACGCTGC 1126
|||||||| ||||| ||| ||| | | || || || |||| ||||||| | |||||||
Sbjct 745 GTTGTTGTAATAGAATCTC-TAGAACTTCACTTGGATGATGGTAGTTTCAATCACGCTGC 803
Query 1127 TCTTATGCTGCAAAACTTCAGATCATTGGTTCAAAATCTTGAGAAAGTTGATCCGAGTAG 1186
| ||||||| ||||||||||||||| | |||||||| |||||||| ||||||||||||||
Sbjct 804 TGTTATGCTCCAAAACTTCAGATCACTAGTTCAAAAACTTGAGAAGGTTGATCCGAGTAG 863
Query 1187 AATGAAACGCGAAGAGAAGCTCGCGTTTTGGATTAACATTCACAATGCTCTTGTGATGCA 1246
||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct 864 AATGAAACGCGAAGAGAAGCTAGCGTTTTGGATAAACATTCACAATGCCCTCACAATGCA 923
Query 1247 TGCTTA-CTTAGCTTATGGAACTCACAACCGCGCAAGAAACACATCGGTTTTGAAGGCAG 1305
||| || || ||| || |||||||||||||| || |||||||| |||||||| |||||||
Sbjct 924 TGCGTATCT-AGCCTACGGAACTCACAACCGTGCCAGAAACACCTCGGTTTTAAAGGCAG 982
Query 1306 CTTATGATATTGGAGGCTATAGAATAAACCCGTTT-ATCATCCAAAGCTCAATCTTAGGA 1364
|||||||| ||||||||||||| ||||||| || || ||||||||||||||||||||
Sbjct 983 CTTATGATGTTGGAGGCTATAGCGTAAACCC-TTACATTATCCAAAGCTCAATCTTAGGC 1041
Query 1365 AT-CAGACCTCATTACACATCACCATCACCTTTACTCCAAAC-TCTGTTTTCGCCTTCAA 1422
|| | | || |||| |||| | |||||| | || || | |||||||||| ||||
Sbjct 1042 ATTC-GCCCACATTTT---TCAC-A--ACCTTTGTTGCAGACAT-TGTTTTCGCCATCAA 1093
Query 1423 GAAAGTCGAAAACTTGCAGTGTTAGACACGTTTACGCATTGGAATACCCCGAGGCTTTAG 1482
|||||||||||||||| | ||| | |||| ||||||| |||||||| |||||||| || |
Sbjct 1094 GAAAGTCGAAAACTTGTAATGTCAAACACATTTACGCCTTGGAATATCCCGAGGCATTGG 1153
Query 1483 CTCATTTCGCTATTTCTTCAGGGGCATTC-ACTGATCCTACGGTAGTTCGGGTTTACACG 1541
||||||| ||| |||||||||| ||| ||||||||| |||| | ||||||||||||
Sbjct 1154 CTCATTTTGCTCTTTCTTCAGGATT-TTCTACTGATCCTCCGGT--T-CGGGTTTACACG 1209
Query 1542 GCGGATAGAATCTTCCGGGATCTAAGACAAGCTAA-GCAAGAGTATATCAGAAGTAATGT 1600
|| ||| | | ||||||||||||||| || | || | |||||| ||| |||| |||||
Sbjct 1210 GCAGATTGCGTATTCCGGGATCTAAGAAAATCCAAAG-AAGAGTTTATAAGAAACAATGT 1268
Query 1601 TCGTGTTTACAAAGGGACAAAGAT-TTGGTTGCCAAAGATCT-TTCAGCATTATGTTAAA 1658
|||| | |||| | ||||||||| ||| ||||| ||||| | |||| | |||| ||||
Sbjct 1269 TCGTATACACAACGAGACAAAGATATTG-TTGCCCAAGAT-TGTTCATTACTATGCTAAA 1326
Query 1659 GACATGTCAATGGATGTGTCTAAGCTCATGGAAGCAACAGCTCA-GTGTTTACCAGAAGC 1717
|| |||||| |||| ||| ||||||||| |||| | | | ||||||||| || |
Sbjct 1327 GATATGTCACTGGAACCATCTGCCCTCATGGAAACAACGG-TGAAGTGTTTACCGGACTC 1385
Query 1718 TGCGAGGAAAATTGCTGAGAAAT-GTTTGAAGGAGAAGAAG-AGTAAGAATTTTGAATGG 1775
||| || || ||| |||||| ||| |||| |||||| | || || | || ||||
Sbjct 1386 CACGAAGAGAACAGCTCAGAAATTGTT-GAAGAAGAAGA-GCAGAAACA-TT--GAATA- 1439
Query 1776 TT-ACCGGAAAATTTGAGTTTCCGATATGTCATC 1808
|| ||||||||| | |||||||| ||||| |||
Sbjct 1440 TTCACCGGAAAACTCAAGTTTCCGTTATGTAATC 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97589859480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5