BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476823
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76650.1 | Symbols: CML38 | calmodulin-like 38 | chr1:287667... 793 0.0
> AT1G76650.1 | Symbols: CML38 | calmodulin-like 38 | chr1:28766750-28767517
REVERSE LENGTH=768
Length=768
Score = 793 bits (429), Expect = 0.0
Identities = 588/662 (89%), Gaps = 21/662 (3%)
Strand=Plus/Plus
Query 43 aaaaTTCTGCCGGAAACTATCACCAAAGAGGAAAGATTCAGGCGGAGAGATACAACAACA 102
||| || |||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 112 AAACTT-TGCCGGAAACTATCACCAAAGAGGGAAGATTCAGCCGGAGAGATACAACAACA 170
Query 103 CAACAGCAACAATGGTGAGGACAAGAACAGAGACTTAGAGGCTGTTTTCGATTACATGGA 162
||||| | |||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 171 TAACAGTAGCAATGGTGAGGACAAGAACAGAGAGTTAGAGGCTGTTTTTTCTTACATGGA 230
Query 163 TGCAAACAAAGACGGTAGAATCTCTGCAGAAGAGCTTCAAAAGAGTTTTATGACATTGGG 222
|||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 231 TGCAAACAGAGACGGTAGAATCTCACCAGAAGAGCTTCAAAAGAGTTTCATGACATTGGG 290
Query 223 AGAGCAATTGTCTGACGAAGAAGCCGAAGCCGCGGTTAGATTGTCTGATACAGACGGAGA 282
||| ||||||||||| |||||||||| ||| || ||||||||||||||||| ||||||||
Sbjct 291 AGAACAATTGTCTGATGAAGAAGCCGTAGCTGCTGTTAGATTGTCTGATACGGACGGAGA 350
Query 283 TGGGATGTTAGATTTTGAGGAATTTACTCAGCTAATCAAAGCAGACGATGAGGAAGAGAA 342
||||||||| ||||||||||||||| ||||| ||||||||| ||| || || ||||||||
Sbjct 351 TGGGATGTTGGATTTTGAGGAATTTTCTCAGTTAATCAAAGTAGATGACGAAGAAGAGAA 410
Query 343 GAAGATAGAGCTCAAAGAAGCGTTTAAACTGTATATTTCAGAAGGTGAAGAGTGTATTAC 402
|||||| |||||||| | |||||||| |||||||||| ||||||||||||| ||||||||
Sbjct 411 GAAGATGGAGCTCAAGGGAGCGTTTAGACTGTATATTGCAGAAGGTGAAGATTGTATTAC 470
Query 403 TCCAAGAAGCTTGAAGATGATGCTAAAGAAGCTAGGAGAATCAAGAACCACTGATGACTG 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 471 ACCAAGAAGCTTGAAGATGATGCTAAAGAAGCTAGGAGAATCAAGAACCACTGATGATTG 530
Query 463 CAAAGTTATGATTAGTGCTTTTGATCTCAATGCTGATGGAGTTTTAAGCTTTGATGAGTT 522
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TAGAGTTATGATTAGTGCTTTTGATCTCAATGCTGATGGAGTTTTAAGCTTTGATGAGTT 590
Query 523 TGCTCTTATGATGCGCTAAGCCTCCATTGTTGTTGTTGTTAATCTC-TTGTTGTA-TATA 580
|||||||||||||||||||||||||||||||||||||||| | | ||||||| | |
Sbjct 591 TGCTCTTATGATGCGCTAAGCCTCCATTGTTGTTGTTGTTGTTGTTGTTGTTGTTCTTTT 650
Query 581 ACTTAAA-TAGT-TTGTG-A-AATGTAAT-G-------C--AATAAACACGATTGTTATT 626
| |||| | | |||| | ||| |||| | | |||||| ||||||||||||
Sbjct 651 ATTTAATCTCTTATTGTATATAATTTAATAGTTTGTGACCCAATAAATACGATTGTTATT 710
Query 627 TGATTAATGATCCATATATATGTGAAACTTTGTTATATTAGAGAGGATGtttttttAACA 686
||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 711 TGATTAAGGATCCATAT----GTGAAACTTTGTTATATTAGAGAAGATGTTTTTTTAACA 766
Query 687 TG 688
||
Sbjct 767 TG 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33305239461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5