BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476830
Length=1606
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76700.1 | Symbols: | DNAJ heat shock N-terminal domain-con... 2438 0.0
AT1G21080.3 | Symbols: | DNAJ heat shock N-terminal domain-con... 1099 0.0
AT1G76720.1 | Symbols: | eukaryotic translation initiation fac... 270 3e-71
> AT1G76700.1 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr1:28780408-28783248 REVERSE LENGTH=1634
Length=1634
Score = 2438 bits (1320), Expect = 0.0
Identities = 1505/1592 (95%), Gaps = 22/1592 (1%)
Strand=Plus/Plus
Query 25 AAAG-TAAATTGAAAGAAAGAGCC-A----AAAAGCTTAGCGGTTGATTTTGAAATCTCG 78
|||| || || ||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 38 AAAGATAGATAGAAAGAAAGAGCCAACTTTAAAAGCTTAGCGGTTGATTTCGAAATCTCG 97
Query 79 TCGCCGGCGCGTGGAGTGTATTCGTCGGAGTTAAACAAGAGAAAGAGAAGAGATTTGTGG 138
||||||||||||||||| | ||||||||| ||||| | | ||| |||||||||||||
Sbjct 98 TCGCCGGCGCGTGGAGTCTTTTCGTCGGA---CAACAACA-AGAGAAAAGAGATTTGTGG 153
Query 139 TGTTCTTCTGCTTAG-TTTGCTGTCATCCATCTCCGGCGA-TGAGATTTGGTGGAGAATT 196
||||||||||||||| ||| ||| |||||||||||| | |||||||||||||||||
Sbjct 154 TGTTCTTCTGCTTAGAATTGTTGTTTTCCATCTCCGGC-AGTGAGATTTGGTGGAGAA-- 210
Query 197 TTGATTGATTTGTGATCGATGGTGAAGGAAACGGAGTACTACGATGTGCTCGGAGTTAGC 256
|| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 211 TT--TTGATTTGTGATCGATGGTTAAGGAAACAGAGTACTACGATGTGCTCGGAGTTAGC 268
Query 257 CCAACTGCTACAGAAGCTGAGATCAAGAAAGCTTACTACATAAAGGCACGCCAAGTTCAT 316
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 269 CCAACTGCTACAGAATCTGAGATTAAGAAAGCTTACTACATAAAGGCACGCCAAGTTCAT 328
Query 317 CCAGATAAGAACCCTAATGATCCTCAAGCTGCACACAATTTCCAGGTTTTGGGAGAGGCC 376
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 329 CCTGATAAGAACCCTAATGATCCTCAAGCTGCACACAATTTCCAGGTCTTGGGAGAGGCC 388
Query 377 TATCAAGTGCTAAGTGATTCAGGACAACGCCAAGCTTATGATGCATGTGGGAAGTCAGGG 436
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 389 TATCAAGTGCTAAGTGATTCAGGACAACGCCAAGCTTATGATGCATGTGGCAAGTCAGGA 448
Query 437 ATCTCCACTGATGCAATCATCGATCCTGCGGCAATATTTGCAATGCTATTTGGCAGCGAA 496
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 449 ATCTCAACTGATGCAATCATCGATCCTGCTGCAATATTTGCAATGCTATTTGGCAGCGAA 508
Query 497 CTTTTTGAAGAGTACATAGGACAGCTTGCTATGGCATCAATGGCTTCACTCGATATCTTC 556
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 509 CTTTTTGAAGGGTACATAGGACAGCTTGCTATGGCATCTATGGCTTCACTTGATATCTTC 568
Query 557 ACTGAAGGGGATCAGTTTGATACCAAAAAGATACAAGAAAAAATGAGGATTGTCCAGAAA 616
|| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 569 ACGGAAGGGGATCAGTTTGATACCAAAAAGATACAAGAAAAATTGAGGATTGTTCAGAAA 628
Query 617 GAAAGAGAAGACAAGCTTGCTCAGGTTCTCAAAGACCGACTCAACGAATATGTGATAAAC 676
|||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 629 GAAAGAGAAGACAAGCTTGCTCAGATTCTGAAAGACCGACTCAACGAATATGTAATAAAC 688
Query 677 AGAGACGAATTTATCAGTAACGCTGAAGCTGAAGTAGCTAGACT-TACAAATGCAGCTTA 735
| |||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||||
Sbjct 689 AAAGACGAATTTATCAGTAATGCTGAAGCTGAAGTAGCAAGACTCT-CAAATGCAGCTTA 747
Query 736 TGGTGTGGATATGTTGAATACAATTGGGTATATATATGTAAGACAAGCAGCAAAAGAGCT 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 TGGTGTGGATATGTTGAATACAATTGGGTATATATATGTAAGACAAGCAGCAAAAGAGCT 807
Query 796 AGGGAAGAAAGCTATTTATCTCGGAGTACCATTCATTGCTGAATGGTTTAGGAACAAAGG 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 AGGGAAGAAAGCTATTTATCTCGGAGTACCATTCATTGCTGAATGGTTTAGGAACAAAGG 867
Query 856 TCACTTCATCAAATCTCAATTAACAGCTGCAACAGGCGCATATGCTTTGTTCCAGTTGCA 915
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 868 TCACTTCATCAAATCTCAATTAACAGCTGCAACAGGCGCATATGCGTTGTTCCAGTTGCA 927
Query 916 GGAGGAAATGAAAAGGCAGCTAAATACTGAAGGAAATTATACTGAGGAGGAACTCGAGGA 975
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 928 GGAGGAAATGAAAAGGCAGCTAAATACTGAAGGAAATTATACTGAGGAGGAACTTGAGGA 987
Query 976 ATACCTTCAGGCCCATAAAAGAGTGATGATTGATTCGCTGTGGAAGCTCAATGTTGCTGA 1035
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 988 ATACCTTCAGGCCCATAAAAGAGTGATGATTGATTCACTGTGGAAGCTCAATGTCGCTGA 1047
Query 1036 TATCGAAGCCACTCTTTGTCGTGTTTGTCAGCTGGTTCTTCAAGATCCAGAAGCCAAAAG 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 TATCGAAGCCACTCTTTGTCGTGTTTGTCAGCTGGTTCTTCAAGATCCAGAAGCCAAAAG 1107
Query 1096 AGAGGAGCTTCGTACAAGAGCAAGAGGGTTAAAAACTCTGGGGAGGATCTTCCAGAGAGC 1155
||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 1108 AGAGGAGCTTCGTACAAGAGCAAGAGGTTTAAAAGCTCTGGGGAGGATCTTTCAGAGAGC 1167
Query 1156 CAAGACAGCTAGTGAGAGTGATCCTTTAGCAAATAATGAACCTCAAAAATTAAACGGAAA 1215
||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||
Sbjct 1168 CAAAACAGCTAGTGAGAGTGATCCTTTAGAAAATAGTGAACCTCAAAAGTTAAACGGAAA 1227
Query 1216 TGGAAGGGACGACCATGATGATACATCTACATCACCAAAATCCAATGAAGCATTTCACTC 1275
||||| | || || |||| ||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 1228 TGGAAAGAACCACGATGAGGATACTTCTACATCACCAAAATCCAGTGAAGCATCTCACTC 1287
Query 1276 TACCTCTGGTCCTCAGGAACCACAAAGCCCCTACGTGGAAGAATTCAAAATTGGAGATGA 1335
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1288 CACCTCTGGTCCTCAGGAACCACAAAGCCCCTACGTGGAAGAATTCAAACTTGGAGATGA 1347
Query 1336 ACAATTCAACTATTACTTCCCACGACCAGCGCCACCTCCTGGCGCAGGGAAACACTCTTC 1395
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1348 ACAATTCAACTATTACTTCCCACGACCAGCGCCACCTCCTGGCGCAGGGAAATACTCTTC 1407
Query 1396 GACTGGCTATGATTGATTCAGGTGAGATCGGGGCatatatatatatCAGTCTTAGCATAT 1455
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1408 CTCTGGCTATGATTGATTCAGGTGAGATCGGGGCATATATATAT--CAGTCTTAGCATAT 1465
Query 1456 TGATATTGCAGTTGTGTACCATTATGTAAAATTATTCCTTTTT-CTTTTGGTTTTGGCTT 1514
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1466 TTCTATTGCAGTTGTGTACCATTATGTAAAATTATTCCTTTTTTCTTTTGGTTTTGGCTT 1525
Query 1515 GTTAGAAGAAAATGATTGATGTTGAAAGCACATATAAAAGCTCTTTTGTGATAATGTGTC 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1526 GTTAGAAGAAAATGATTGATGTTGAAAGCACATATAAAAGCTCTTTTGTGATAATGTATC 1585
Query 1575 CATGGAAATTATTGTGAAGGTGTAATGACTTA 1606
|||| |||||||| ||||||| ||||||||||
Sbjct 1586 CATGTAAATTATTATGAAGGTATAATGACTTA 1617
> AT1G21080.3 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr1:7378538-7382661 REVERSE LENGTH=1873
Length=1873
Score = 1099 bits (595), Expect = 0.0
Identities = 942/1107 (85%), Gaps = 34/1107 (3%)
Strand=Plus/Plus
Query 199 GATTGATTTG-TGATCGATGGTGAAGGAAACGGAGTACTACGATGTGCTCGGAGTTAGCC 257
|||||||||| | || ||||||||||| ||||||| |||||||| ||||| |||||||
Sbjct 371 GATTGATTTGATAAT-TATGGTGAAGGAGACGGAGTTTTACGATGTCCTCGGCGTTAGCC 429
Query 258 CAACTGCTACAGAAGCTGAGATCAAGAAAGCTTACTACATAAAGGCACGCCAAGTTCATC 317
| || ||||| || |||||||| ||||||||||| ||||| |||||||||||||| ||||
Sbjct 430 CCACCGCTACGGAGGCTGAGATTAAGAAAGCTTATTACATCAAGGCACGCCAAGTGCATC 489
Query 318 CAGATAAGAACCCTAATGATCCTCAAGCTGCACACAATTTCCAGGTTTTGGGAGAGGCCT 377
||||||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||||
Sbjct 490 CAGATAAAAACCCTAATGATCCTCAGGCTGCTCATAATTTCCAGGTATTGGGAGAGGCCT 549
Query 378 ATCAAGTGCTAAGTGATTCAGGACAACGCCAAGCTTATGATGCATGTGGGAAGTCAGGGA 437
| ||||||||||||||| |||| ||||| || || ||||| ||| ||||||||||||||
Sbjct 550 ACCAAGTGCTAAGTGATCCAGGGCAACGTCAGGCCTATGACACATCTGGGAAGTCAGGGA 609
Query 438 TCTCCACTGATGCAATCATCGATCCTGCGGCAATATTTGCAATGCTATTTGGCAGCGAAC 497
| || ||||| | ||||| ||||||||||| |||||||| ||||| ||||| || ||||
Sbjct 610 TTTCAACTGA-G--ATCATTGATCCTGCGGCTATATTTGCTATGCTTTTTGGGAGTGAAC 666
Query 498 TTTTTGAAGAGTACATAGGACAGCTTGCTATGGCATCAATGGCTTCACTCGATATCTTCA 557
| |||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 667 TCTTTGAAGAATACATAGGGCAGCTTGCTATGGCATCAATGGCTTCACTTGATATCTTCA 726
Query 558 CTGAAGGGGATCAGTTTGATACCAAAAAGA-TACAAGAAAAAATGAGGATTGTCCAGAAA 616
|||||||||||||| ||||||| ||||||| || ||||||||||||| ||| ||||||
Sbjct 727 CTGAAGGGGATCAGATTGATACTAAAAAGATTA-TAGAAAAAATGAGGGCTGTTCAGAAA 785
Query 617 GAAAGAGAAGACAAGCTTGCTCAGGTTCTCAAAGACCGACTCAACGAATATGTGATAAAC 676
|||||||||||||| ||||||||| |||| || ||||| |||||| |||| ||| |||
Sbjct 786 GAAAGAGAAGACAAACTTGCTCAGATTCTTAAGGACCGCCTCAACCTATATATGACGAAC 845
Query 677 AGAGACGAATTTATC-AGTAACGCTGAAGCTGAAGTAGCTAGACT-TACAAATGCAGCTT 734
| ||| ||||||| | || || ||||||||||||||| | ||||| | |||||||||| |
Sbjct 846 AAAGATGAATTTA-CTAGCAATGCTGAAGCTGAAGTAACAAGACTCT-CAAATGCAGCAT 903
Query 735 ATGGTGTGGATATGTTGAATACAATTGGGTATATATATGTAAGACAAGCAGCAAAAGAGC 794
| || ||||| |||||||| ||||| || ||||||||||| |||||||| ||||||||||
Sbjct 904 ACGGGGTGGAAATGTTGAACACAATCGGATATATATATGTCAGACAAGCGGCAAAAGAGC 963
Query 795 TAGGGAAGAAAGCTATTTATCTCGGAGTACCATTCATTGCTGAATGGTTTAGGAAC-AAA 853
| ||||||||||||||||||||||| || |||||| | ||||||||||||||| || |||
Sbjct 964 TTGGGAAGAAAGCTATTTATCTCGGTGTGCCATTCGTAGCTGAATGGTTTAGG-ACGAAA 1022
Query 854 GGTCACTTCATCAAATCTCAATTAACAGCTGCAACAGGCGCATATGCTTTGTTCCAGTTG 913
||||||||||||||||| ||| |||||||||||||||| ||||| ||||| |||||| ||
Sbjct 1023 GGTCACTTCATCAAATCCCAAGTAACAGCTGCAACAGGTGCATACGCTTTATTCCAGCTG 1082
Query 914 CAGGAGGAAATGAAAAGGCAGCTAAATACTGAAGGAAATTATACTGAGGAGGAACTCGAG 973
|| ||||||||||||||||| |||| | ||||||| |||||||| ||| ||||||| ||
Sbjct 1083 CAAGAGGAAATGAAAAGGCAACTAAGTGCTGAAGGCAATTATACCGAGAAGGAACTTGAA 1142
Query 974 GAATACCTTCAGGCCCATAA-AAGAGTGATGATTGATTCGCTGTGGAAGCTCAATGTTGC 1032
|| ||| | || ||||||| || ||| ||||||||||| ||||||||||||||||||||
Sbjct 1143 GAGTACATGAAGACCCATAAGAA-AGTAATGATTGATTCTCTGTGGAAGCTCAATGTTGC 1201
Query 1033 TGATATCGAA-GCCACTCTTTGTCGTGTTTGTCAGCTGGTTCTTCAAGATCC-AGAAGCC 1090
|||||||||| || ||| | | ||||||||| ||| ||| ||||||||||| | |||
Sbjct 1202 TGATATCGAAAGC-ACTATCTCCCGTGTTTGTGAGCAGGTACTTCAAGATCCCACT-GCC 1259
Query 1091 AAAAGAGAGGAGCTTCGTACAAGAGC-AAGAGGGTTAAAAACTCTGGGGAGGATCTTCCA 1149
|| ||||||||||||||| |||| || ||| ||||||||||||||||| | |||||||||
Sbjct 1260 AAGAGAGAGGAGCTTCGTGCAAGGGCCAAG-GGGTTAAAAACTCTGGGAAAGATCTTCCA 1318
Query 1150 GA-GAGCCAAGACAGCTAGTGAGAGTGATCCTTTAGCAA-ATAATGAACCTCAAAAATTA 1207
|| || | |||| ||| ||||||||||||||||||| || | |||| ||| ||| ||
Sbjct 1319 GAAGAAC-AAGATAGCCAGTGAGAGTGATCCTTTAGTAAGAGCC-GAACTTCACAAACTA 1376
Query 1208 AACGGAAATGG--AAGGGACGACCATGATGATACATCTACATCACCAAAATCCAATGAAG 1265
||||||||||| ||| | || ||||| || |||| |||||||||||||| ||||||
Sbjct 1377 AACGGAAATGGTCAAG--A--AC-ATGATCATTCATCCACATCACCAAAATCTGATGAAG 1431
Query 1266 CATTTCACTCTACC-TCTGGTCCTCAG 1291
||| || ||||||| | ||| ||||||
Sbjct 1432 CATCTCGCTCTACCGT-TGGACCTCAG 1457
> AT1G76720.1 | Symbols: | eukaryotic translation initiation factor
2 (eIF-2) family protein | chr1:28794144-28800369 REVERSE
LENGTH=4156
Length=4156
Score = 270 bits (146), Expect = 3e-71
Identities = 226/261 (87%), Gaps = 19/261 (7%)
Strand=Plus/Plus
Query 1160 ACAGC-TAGTGAGAGTGATCCTTTAGCAAATAATGAACCTCAAAAA-TTAAACGGAAATG 1217
||||| || |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 323 ACAGCTTA-TGAGAGTGATCCTTTAGCAAATAATGAATCTCAAAAAGTTAAACGGAAATG 381
Query 1218 GAAGGGACGACCATGATGATACATCTACATCACCAAAATCCAATGAAGCATTTCACTCT- 1276
||| |||| || |||| ||||| || || ||||||||||||| |||||||| ||||| |
Sbjct 382 GAAAGGACCACGATGAGGATACCTCCACGTCACCAAAATCCAGTGAAGCATCTCACT-TG 440
Query 1277 ACCTCTGGTCCTCAGGAACCACAAAGCCCCTACGTGGAAGAATTCAAAATTGGAGATGAA 1336
| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 441 AGCTCTGGTCCTCAGGAACCACAGAGCCCCTACGTGGAAGAATTCAAACTTGGAGATGAA 500
Query 1337 CAATTCAACTATTACTTCCCACGACCAGCGCCACCTCCTGGCGCAGGGAAACACTCT-TC 1395
||||||||||||| |||||||| | ||||| ||||| |||||||||| |
Sbjct 501 CAATTCAACTATTGCTTCCCAC--C----------TCCTGCCGCAGAGAAACACTCTAT- 547
Query 1396 GACTGGCTATGATTGATTCAG 1416
|||||||||||||||||||||
Sbjct 548 GACTGGCTATGATTGATTCAG 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79316861100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5