BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476834
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76730.1 | Symbols: | NagB/RpiA/CoA transferase-like superf... 1757 0.0
> AT1G76730.1 | Symbols: | NagB/RpiA/CoA transferase-like superfamily
protein | chr1:28802925-28804784 REVERSE LENGTH=1254
Length=1254
Score = 1757 bits (951), Expect = 0.0
Identities = 1090/1158 (94%), Gaps = 5/1158 (0%)
Strand=Plus/Plus
Query 19 GTTCGTGGATCTAACGATGATACGATTATCACCTGGATTTGCAATCAATTCTTGTTTTCG 78
||||||||||||| | |||||| |||||||||||||||||||||||||| || |||||||
Sbjct 66 GTTCGTGGATCTACCAATGATAAGATTATCACCTGGATTTGCAATCAATCCTCGTTTTCG 125
Query 79 TTCCAATACCTTCGTCAATTCCCAGAAATCGACTTCTCTCTCCGCT-CAAATCGGGTCAC 137
||| || |||| ||||||||||||||| || ||| |||||||| | |||||||||||||
Sbjct 126 ATCCGATTCCTTTGTCAATTCCCAGAAACCGCCTTTTCTCTCCG-TCCAAATCGGGTCAC 184
Query 138 GGCGGAGGAATTTCTCTAGAATCGGATCGGAGAGCGGCGACGGCGTCGCTTTCGATGCTG 197
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 185 AGCGGAGGAATCTCTCTAGAATCGGATCGGAGAACGGCGACGGCGTCGCTTTCGATGCTG 244
Query 198 TGGTTTATGAATCTGAGAGGTTGAGCCTCGATGCGGCGGCGATGGAGGATATGGCGGAGA 257
| | |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 245 TAGCTTATGAGGCTGATCGGTTGAGCCTCGACGCGGCGGCGATGGAGGATATGGCGGAGA 304
Query 258 CTGCGAAGAAGGAACTAGAATCGGATCCAGATAATGACCCGAAAGCGTGGAAATGGGTCA 317
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 305 CTGCAAAGAAGGAACTAGAATCGGATCCAGATAGTGACCCGAAAGCGTGGAAATGGGTTA 364
Query 318 TCCGAAAGAAGATGTGGGATCTCATGGAAGCTCGGAACTACGCAATGAGCCCTAGACCTG 377
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 365 TCCGAAAGAAGATGTGGGATCTCATGGAAGCTCGGAACTACGCTATGAGCCCTAGACCTG 424
Query 378 TTCATCATCGAATCCCTAATTTCGTCGGTGCATCGGCTGCTGCACGAAAATTAGCCGAGC 437
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 425 TTCATCATCGAATCCCTAATTTCGTCGGTGCATCGGCTGCTGCAAGAAAATTAGCCGAGC 484
Query 438 TTGATGCTTTTCGTAAGGCTATGGTCGTGAAGGTTAATCCCGATTCGCCGCAAAAGCAAA 497
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 485 TTGATGCTTTTCGTATGGCTATGGTCGTGAAGGTTAATCCCGATTCGCCTCAAAAGCAAA 544
Query 498 TCAGGTTTCTTACACTTTCTGGAGACAAGAGGCTGTTGACCCCTCAACCTAGGCTAAGAA 557
|||||||||||||||||||||| || |||| ||||||||| |||||||| ||||||||||
Sbjct 545 TCAGGTTTCTTACACTTTCTGGTGAAAAGAAGCTGTTGACTCCTCAACCGAGGCTAAGAA 604
Query 558 CAGGATTTTTCTCAGTACTAGAATCTGATTTGTTGAAACCCGAAACCATCATGGAGGCTT 617
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 605 CAGGATTCTTCTCTGTACTAGAATCTGATTTGTTGAAACCCGAAACGATCATGGAGGCTT 664
Query 618 GCACTTCTGTAGGAGTAGCCAAATATGGAAGAGCGATTGGCCTTGATGAGAAAATCAAAG 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GCACTTCTGTAGGAGTAGCCAAATATGGAAGAGCGATTGGCCTTGATGAGAAAATCAAAG 724
Query 678 TTGATCTCATCGTCATTGGCTCTGTTGCGGTTAACCCACAAACGGGTGCTAGATTAGGGA 737
| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 725 TGGATCTCATTGTCATTGGCTCTGTTGCGGTTAACCCACAAACGGGTGCTCGATTAGGGA 784
Query 738 AAGGAGAGGGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGATG 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 AAGGAGAGGGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGATG 844
Query 798 ATTCCACACCTGTTGTTACCACCGTACATGATTGTCAGCTCGTAGACGATATACCCCTAG 857
|||||||||| |||||||| || ||||||||||||||||| ||||| |||||||| || |
Sbjct 845 ATTCCACACCCGTTGTTACAACTGTACATGATTGTCAGCTTGTAGATGATATACCTCTCG 904
Query 858 AGAAACTGGCGATTCACGATGTTCCTGTGGATATCATATGCACTCCTACTCGAGTCATCT 917
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 905 AGAAACTGGCGATTCACGATGTTCCTGTGGATATCATATGCACTCCTACTCGAGTCATTT 964
Query 918 TCACAAATACACCAATACCAAAACCACAAGGAATTTATTGGGACAAACTGTCACCGGAGA 977
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 965 TCACAAACACACCAATACCAAAACCACAAGGAATTTATTGGGACAAACTGTCGCCGGAGA 1024
Query 978 AGCTAGGACAGATTCGGATACTAAGAGAGCTAAAGAAGAGATTGGAAAAGAATACTGGCC 1037
||||| |||||||||| |||||||||||||||||||| || |||||||||| |||||||
Sbjct 1025 AGCTACGACAGATTCGAATACTAAGAGAGCTAAAGAATCGACTGGAAAAGAAGACTGGCC 1084
Query 1038 GTAAACTTCCGACTGGACCATCTGAGAAATTACCTCCTACTGCTGAGCGCAAACGCCGGT 1097
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1085 GTAAACTTCCGACTGGACCATCTGAGAAATTACCTCCTACGGCTGAGCGAAAACGCCGGT 1144
Query 1098 AACTAAACCGCCTGGTTTTTACCGGTTTGTTTTCGGTTACTGTTTTATACGATAATAAAA 1157
|||| ||||||||| |||||||||||||||||||||||||||| |||||||| || || |
Sbjct 1145 AACTTAACCGCCTGTTTTTTACCGGTTTGTTTTCGGTTACTGTATTATACGAGAA-AACA 1203
Query 1158 CAAATGATATGTATATTA 1175
||| |||||||||||||
Sbjct 1204 -AAA-GATATGTATATTA 1219
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57680426205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5