BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476835
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76750.1 | Symbols: | Protein of unknown function (DUF1278)... 983 0.0
AT1G76760.1 | Symbols: ATY1, TRX-Y1, TY1 | thioredoxin Y1 | chr... 62.1 7e-09
> AT1G76750.1 | Symbols: | Protein of unknown function (DUF1278)
| chr1:28811040-28811721 FORWARD LENGTH=682
Length=682
Score = 983 bits (532), Expect = 0.0
Identities = 635/684 (93%), Gaps = 9/684 (1%)
Strand=Plus/Plus
Query 1 CACAAACAAATCAACCAGACCCACTTCTACTCTTTCTTCTTTCGACCTTATCAATCTGTT 60
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 3 CACAAACAAATCAACCAAAGCAACTTCTACTCTTTCTTCTTTCGACCTTATCAATCTGTT 62
Query 61 GAGAAATGGCTACCAAGTCCAGTTTCATGACTACCTTCAACGTTGTGACACTCGTACTCA 120
||||||||||| |||| || ||||||||| ||||||||||| ||||||| ||| | ||||
Sbjct 63 GAGAAATGGCTTCCAAATCTAGTTTCATGGCTACCTTCAACATTGTGACTCTCATGCTCA 122
Query 121 TGGTGGTTTCTTCTTCCACTGTGACAGCTCGCCCTCTCATGAAACCGTCCATGGGCTCGT 180
|||||| |||| ||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 123 TGGTGG---CTTCCTCCACAGTGACAGCTCGCCCTCTCATGAAACCATCCATGGGGACGT 179
Query 181 CTTCTCCTACCTCAAGCCTTGTGTACAGGCTCAGGCTTGATGAAGATACAGGTTACTGCT 240
||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 180 CTTCTCCTACCACAAGCCTTGTGTACAGGCTCAAGCTTGATGAAGATACAGGGTACTGCT 239
Query 241 GGGACTCACTCATGCAGCTCCAACACTGCTCCGGAGAGCTCATCTTGTTCTTCCTCAACG 300
|||||||||| ||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 240 GGGACTCACTGATGCAGCTCCAACACTGTTCTGGAGAGCTGATCTTGTTCTTCCTCAACG 299
Query 301 GTGAGACTTACATTGGCCCTGGGTGTTGTAGTGCTATAAGAACCATTGGACGCAAGTGTT 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 GTGAGACTTACATTGGCCCTGGGTGTTGCAGTGCTATAAGAACCATTGGACGCAAGTGTT 359
Query 361 GGCCTACTATGATTGGTGTTCTTGGTTTTACTGCTCAAGAAGGTGACATGCTCCAAGGTT 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 360 GGCCTACTATGATTGGTGTTCTTGGTTTTACTGCTCAAGAAGGTGATATGCTCCAAGGTT 419
Query 421 ACTGTGATGGCAATGACTCTGACAACAATGGTGAGGACCATGCTCTTGCCTCCTCACCAC 480
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 420 ACTGTGATGGCAATGACTCTGACAACAATGGTGAAGACCATGCTCTTGCCTCCTCAACAC 479
Query 481 TGCCTCTCTCCGTGGATTTCAAGCCTATGGTTGTTAGATCTTCTTCTTCT--T-CTAACC 537
|||||||||||||| |||||||| ||| ||||||||||||||| ||||| | ||||||
Sbjct 480 TGCCTCTCTCCGTGAATTTCAAGACTACCGTTGTTAGATCTTCTGCTTCTCCTTCTAACC 539
Query 538 CTTGAATCTTAGTATTCAGGTTTACACTCCTGCTATGTTTTCTTTTGCTAAGAGGAATTT 597
||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 540 CTTGAGTCTTAGTATTCATCTTTACACTCCTGCTATGTTTTCTTTTGCTAAGAG-AATTT 598
Query 598 -AGTCTTTATGTAACTGGAGAGGAATGCTTTAAAAATAGCTTCTCTGTTATTACTTT-GA 655
| ||||||||||||||| || |||||||| ||||||||| |||||||||||||||| ||
Sbjct 599 TAATCTTTATGTAACTGGTGACGAATGCTTGAAAAATAGCGTCTCTGTTATTACTTTTGA 658
Query 656 GAATAAAAGATCATCATTACTCAC 679
||||||||||||||||||||||||
Sbjct 659 GAATAAAAGATCATCATTACTCAC 682
> AT1G76760.1 | Symbols: ATY1, TRX-Y1, TY1 | thioredoxin Y1 | chr1:28811685-28813070
REVERSE LENGTH=829
Length=829
Score = 62.1 bits (33), Expect = 7e-09
Identities = 36/37 (97%), Gaps = 1/37 (3%)
Strand=Plus/Minus
Query 644 TTATTAC-TTTGAGAATAAAAGATCATCATTACTCAC 679
||||||| |||||||||||||||||||||||||||||
Sbjct 829 TTATTACTTTTGAGAATAAAAGATCATCATTACTCAC 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5