BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476836

Length=726
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76760.1 | Symbols: ATY1, TRX-Y1, TY1 | thioredoxin Y1 | chr...   929    0.0  


> AT1G76760.1 | Symbols: ATY1, TRX-Y1, TY1 | thioredoxin Y1 | chr1:28811685-28813070 
REVERSE LENGTH=829
Length=829

 Score =  929 bits (503),  Expect = 0.0
 Identities = 562/590 (95%), Gaps = 6/590 (1%)
 Strand=Plus/Plus

Query  141  TTTCCGGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCCTCTTTATCTTCAACGACT  200
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  231  TTTCCGGTTCGTCGGGTTCGAACCGGAGACTTAAAGTTTCCATCTTTATCTTCAACGACT  290

Query  201  CGATGCACTCCTAGACTTATTGAAGCCAAGAAGCAGACATTTGACTCCTTTGAGGATCTG  260
            |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct  291  CGATGCACTCCTCGACGTATTGAAGCCAAGAAGCAGACATTTGACTCATTTGAGGATCTG  350

Query  261  CTTGTGAACTCTGATAAGCCAGTTCTGGTTGACTATTATGCAACCTGGTGTGGTCCTTGC  320
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct  351  CTTGTGAACTCTGATAAACCAGTTCTAGTTGACTATTATGCAACCTGGTGTGGTCCTTGC  410

Query  321  CAGTTCATGGTTCCTATACTCAATGAAGTGAGTGCAACCCTGAAAGACAAGATCCAGGTG  380
            |||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct  411  CAGTTCATGGTTCCAATACTCAATGAAGTGAGTGAAACCCTGAAAGACAAGATACAGGTG  470

Query  381  GTGAAGATCGATACCGAAAAATACCCGAGTATTGCCAATAAATACAAGATTGAGGCACTT  440
            |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  471  GTGAAGATTGATACCGAAAAATACCCCAGTATTGCTAATAAATACAAGATTGAGGCACTT  530

Query  441  CCTACTTTCATCCTATTCAAAGATGGGGAACCTTGTGATCGCTTTGAGGGTGCTTTGACG  500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  531  CCTACTTTCATCCTATTCAAAGATGGGGAACCTTGTGATCGCTTTGAGGGTGCTTTGACG  590

Query  501  GCCAAACAACTCATCCAACGAATTGAGGATTCTCTAAAAGTGAAGCCATAGTTATGGATC  560
            |||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||
Sbjct  591  GCCAAACAACTCATTCAACGAATTGAGGATTCTCTAAAAGTGAAGCCATAGTT--GGATC  648

Query  561  ATGAACTCTTTTTTAATTATTGGTGTGTTTTTCCACTGTCCCTGAGCGAATCAGGGCTTA  620
            ||||||||||||||||||||| || |||||||| ||||||||||| | | ||||| ||||
Sbjct  649  ATGAACTCTTTTTTAATTATTTGTATGTTTTTCAACTGTCCCTGACCTATTCAGGACTTA  708

Query  621  GCGATAG-G-T-TTTT-CGGTTGATTTAACTTGGAGAATTTGAGAAGAAGAAGGTTATGT  676
            | ||||| | | |||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct  709  GTGATAGCGATGTTTTTCGGTTGATTTAACTTGGAGAATTTGAGAAGAAGAAGATTATGT  768

Query  677  TTGCCAGATTTGTAAAACCTTGTTGTGAGTAATGATGATCTTTTATTCTC  726
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  769  TTGCCAGATTTGTAAAACCTTGTTGTGAGTAATGATGATCTTTTATTCTC  818



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 35214137047


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5