BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476838
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76790.1 | Symbols: | O-methyltransferase family protein | ... 2010 0.0
AT1G21100.1 | Symbols: | O-methyltransferase family protein | ... 621 5e-177
AT1G76780.1 | Symbols: | HSP20-like chaperones superfamily pro... 122 6e-27
> AT1G76790.1 | Symbols: | O-methyltransferase family protein
| chr1:28822186-28823673 REVERSE LENGTH=1316
Length=1316
Score = 2010 bits (1088), Expect = 0.0
Identities = 1217/1280 (95%), Gaps = 6/1280 (0%)
Strand=Plus/Plus
Query 2 AAAAATGGGACACCTAATTCCTCAAACCGGAGATGAAGAAACCGAGCTTGGTTTAGCGGC 61
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 40 AAAAATGGGACACCTAATTCCTCAAACCGGAGATGAAGAGACCGAGCTTGGTTTAGCTGC 99
Query 62 GGTTAGGCTAGCCAATTGTGCAGCCTTCCCTATGGTTTTCAAAGCTGCCATCGAGCTCGG 121
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 100 GGTTAGGCTAGCTAACTGTGCAGCCTTCCCAATGGTTTTCAAAGCTGCCATCGAGCTCGG 159
Query 122 TGTCATTGACACTCTCTACTTAGCTGCTCGTGCTGACGTCACCGGATCCGGTTCTTTCCT 181
|||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |||||
Sbjct 160 TGTCATCGACACTCTCTACTTAGCTGCTCGTGATGACGTCACCGGATCCAGTTCCTTCCT 219
Query 182 CACACCTTCTGAGATAGCTACTCGGCTTCCCACAAAACCTAGTAACCCTGAAGCACCGGC 241
|||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||
Sbjct 220 CACACCTTCTGAGATAGCTATTAGGCTCCCCACAAAACCTAGTAACCCTGAAGCACCAGC 279
Query 242 TCTGTTGGACCGTATTCTTCGTTTACTCGCTAGCTACTCCATGGTCAAGTGCCAAGTTAT 301
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 280 TCTGTTGGATCGTATTCTTCGTTTACTTGCTAGCTACTCCATGGTCAAGTGCCAAATTAT 339
Query 302 AGAGGGCAAGAGGGTCTACAAAGCAGAGCCTATTTGTCGCTATTTCTTGAAAGATAATGT 361
|| || || || ||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 340 CGATGGTAACAGAGTCTACAAAGCAGAGCCGATTTGTCGATATTTCTTGAAAGATAATGT 399
Query 362 TGATGAAGAGTTAGGTACACTTGCTTCTCAACTTATTGTCACACTCGATAGCGTCTTCCT 421
||||||||| ||||| |||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 400 TGATGAAGAATTAGGAACACTTGCTTCTCAACTTATTGTCACTCTCGATACCGTCTTCCT 459
Query 422 CAATACATGGGGAGAATTAAAAAATGTGGTGCTAGAAGGAGGAGTTGCATTTGGCCGTGC 481
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 460 CAATACATGGGGAGAATTAAAAAATGTGGTACTAGAAGGAGGAGTTGCATTTGGCCGTGC 519
Query 482 CAATGGTGGTCTGAAACTCTTTGACTATATAAGCAAAGATGAGAGATTAAGCAAACTCTT 541
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 520 CAATGGTGGTTTGAAACTCTTTGACTATATTAGCAAAGATGAGAGATTAAGCAAACTCTT 579
Query 542 TAACCGGACCGGATTCTCTGTCGGGGTTTTGAAAAAGATTCTACAAGTTTATAGAGGTTT 601
||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||
Sbjct 580 TAACCGGACCGGATTCTCTGTCGCGGTTTTGAAAAAGATCCTACAAGTTTATAGTGGTTT 639
Query 602 CGAAGGAGTTAATGTGTTGGTTGATGTAGGAGGTGGAGTTGGAGACACACTTGGTTTTGT 661
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 640 CGAAGGAGTTAATGTGTTGGTTGATGTAGGAGGTGGAGTTGGTGACACACTTGGTTTTGT 699
Query 662 TACTTCCAAGTATCCAAACATTAAGGGTATCAATTTTGATCTAACTTGTGCTTTGACACA 721
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 700 TACTTCAAAGTATCCAAACATTAAGGGTATCAATTTTGATCTAACTTGTGCTTTAACACA 759
Query 722 AGCTCCTTCTTATCCTAATGTGGAACATGTGGCTGGAGACATGTTTGTTGATGTCCCAAA 781
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 760 AGCTCCTTCTTATCCTAATGTGGAACATGTAGCTGGAGACATGTTTGTTGATGTCCCAAA 819
Query 782 AGGTGATGCTATCATCTTAAAACGTATACTTCATGACTGGACTGATGAAGACTGTGAAAA 841
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 820 AGGTGATGCTATCCTCTTGAAACGTATACTTCATGACTGGACTGATGAAGACTGTGAAAA 879
Query 842 GATTCTCAAGAATTGTTGGAAAGCATTACCGGAGAATGGGAAAGTGATTGTCATGGAAGT 901
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 880 GATTCTCAAGAATTGTTGGAAAGCATTACCTGAGAATGGGAAAGTGATTGTCATGGAAGT 939
Query 902 AGTTACTCCGGATGAAGCAGATAATCATGATGTGATATCCAACATTGCCTTTGATATGGA 961
||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 940 AGTTACTCCAGATGAAGCAGATAATCGTGATGTGATATCCAACATTGCTTTTGATATGGA 999
Query 962 TCTGTTGATGCTCACACAATTATCTGGAGGAAAAGAGAGGTCGCGGGCCGAGTATGTAGC 1021
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1000 TCTGTTGATGCTCACTCAATTATCTGGAGGTAAAGAGAGGTCGCGGGCCGAGTATGTAGC 1059
Query 1022 TATGGCTGCAAACTCGGGTTTTCCGCATTGCAACTTTGTATGCAGCGCATATCATTTGTG 1081
||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1060 TATGGCTGCTAACTCGGGTTTTCCGCGTTGCAACTTTGTATGCAGTGCATATCATTTGTG 1119
Query 1082 GGTCATCGAGTTAACGAAACAGGCTTAAAGTTGTAAGATTATGTTTCC-CCTTGTGTTCT 1140
|||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||
Sbjct 1120 GGTCATTGAGTTAACGAAACAGGCTTAGAGTTGTAAGATTATGTTTCTTCCT-GTGTTCT 1178
Query 1141 ATATATAAAGAGCGTGAACCGTCTCATGGTAATAAAAGTTGTATGGATAAAAAGATGATA 1200
||| | | ||| |||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1179 ATA-A-A--GAGTGTGAACCGTCTCATGGTAATAAAAGTTGTATGAATAAAATGATGATA 1234
Query 1201 TTGTGCCTTGGTTAGAACTTGTAACATCTTATTTTTCTCTTGGAACGAATGATACTAATA 1260
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1235 TTGTGGTTTGGTTAGAACTTGTAACATCTTATGTTTCTCTTGGAACGAATGATACTAATA 1294
Query 1261 ACTATGACTATAAGTGACAT 1280
||||||||||||||||||||
Sbjct 1295 ACTATGACTATAAGTGACAT 1314
> AT1G21100.1 | Symbols: | O-methyltransferase family protein
| chr1:7386839-7388428 REVERSE LENGTH=1384
Length=1384
Score = 621 bits (336), Expect = 5e-177
Identities = 765/968 (79%), Gaps = 46/968 (5%)
Strand=Plus/Plus
Query 84 GCCTTCCCTATGGTTTTCAAAGCTGCCATCGAGCTCGGTGTCATTGACACTCTCTACTTA 143
||||| ||||||||| ||||||| ||| ||||||| |||||| ||||||||||||||
Sbjct 219 GCCTTTCCTATGGTTCTCAAAGCCGCCCTCGAGCTTGGTGTCTTTGACACTCTCTACGCC 278
Query 144 GCTGCTCGTGCTGACGTCACCGGATCCGGTTCTTTCCTCACACCTTCTGAGATAGCTACT 203
|| || | | || || |||| || | || |||||| |||| | ||| ||||| | |
Sbjct 279 GCAGC-C-T-CT--CG-CACC-GA--C---TCATTCCTCTCACCCTATGAAATAGCAAGT 326
Query 204 CGGCTTCCCACAAAACCTAGTAACCCTGAAGCACCGGCTCTGTTGGACCGTATTCTTCGT 263
||| || || | |||| ||||||||||||| |||| | |||||||||| || ||||||
Sbjct 327 AAGCTACCAACTACACCTCGTAACCCTGAAGCGCCGGTTTTGTTGGACCGCATGCTTCGT 386
Query 264 TTACTCGCTAGCTACTCCATGGTCAAGTGCC--AAG---TTATA-G-A--GGGCAAGAGG 314
|||||||||||||||||||||||||||| ||| |||| | | |||| |||||
Sbjct 387 CTACTCGCTAGCTACTCCATGGTCAAGTGTGGTAAGGCCTTATCCGGAAAGGGCGAGAGG 446
Query 315 GTCTACAAAGCAGAGCCTATTTGTC-GCTAT-TTCTTGAAAGATAATGTTGATGAAGAGT 372
||||||| ||| ||||| ||||| | | | | |||||||| ||||| || | || | |
Sbjct 447 GTCTACAGAGCCGAGCCGATTTG-CAGGT-TCTTCTTGAAGGATAACATTCAAGAT-A-T 502
Query 373 TAGG-TACACTTGCTTCTCAACTTATTGTCACACT-CGATAGCGTCTTCCTCAATACATG 430
| || | | |||||||||||| | || |||| | | ||| ||||||||||| ||||| ||
Sbjct 503 T-GGATCC-CTTGCTTCTCAAGTCATCGTCA-ATTTCGACAGCGTCTTCCTTAATACCTG 559
Query 431 GGGAGAATTAAAAAATGTGGTGCTAGAAGGAGGAGTTGCATTTGGCCGTGC-CAATGGTG 489
|| | | || ||| ||||||||||||||||||||| ||| ||||| || || || |||||
Sbjct 560 GGCACAGTTGAAAGATGTGGTGCTAGAAGGAGGAGATGCGTTTGGTCGCGCACA-TGGTG 618
Query 490 GTCTGAAACTCTTTGACTATATAAGCAAAGATGAGAGATTAAGCAAACTCTTTAACCGGA 549
|| ||||||||||||||||||| | | |||||||||||| ||||| |||||||||| ||
Sbjct 619 GTATGAAACTCTTTGACTATATGGGTACAGATGAGAGATTCAGCAAGCTCTTTAACCAGA 678
Query 550 CCGGATTCTCTGTCGGGGTT-TTGAAAAAGATTCTACAAGTTTATAGA-GGTTTCGAAGG 607
|||||||| | ||| ||| || || ||| || |||| ||| || || ||| ||||
Sbjct 679 CCGGATTCACAATCGCGGTCGTT-AAGAAGGCCCTTGAAGTCTAT-GAAGGCTTCAAAGG 736
Query 608 AGTTAATGTGTTGGTTGATGTAGGAGGTGGAGTTGG-AGACACACTTGGTTTTGTTACTT 666
|| || || || |||||||| ||||| |||||||| | |||| |||||| |||||||||
Sbjct 737 TGTGAAAGTTTTAGTTGATGTTGGAGGAGGAGTTGGTA-ACACTCTTGGTGTTGTTACTT 795
Query 667 CCAAGTATCCAAACATTAAGGGTATCAATTTTGATCTAACTTGTGCTTTGACACAAGCTC 726
| || ||||| || |||||||||||||| ||||||||||| ||||| ||| ||||||| |
Sbjct 796 CTAAATATCCCAATATTAAGGGTATCAACTTTGATCTAACCTGTGCCTTGGCACAAGCAC 855
Query 727 CTTCTTATCCTAATGTGGAACATGTGGCTGGAGACATGTTTGTTGATGTCCCAAAAGGTG 786
|||||||||| |||||| ||||| || ||||| |||||||| |||||||||| || |
Sbjct 856 CTTCTTATCCCGGTGTGGAGCATGTTGCCGGAGATATGTTTGTGGATGTCCCAACCGGAG 915
Query 787 ATGCTATCATCTTAAAACGTATACTTCATGACTGGACTGATGAAGACTGTGAAAAGATTC 846
|||| || ||||| ||||||||||||||||| ||||| || ||||| |||| |||||||
Sbjct 916 ATGCCATGATCTTGAAACGTATACTTCATGATTGGACCGACGAAGATTGTGTCAAGATTC 975
Query 847 TCAAGAATTGTTGGAAAGCATTACCGGAGAATGGGAAAGTGATTGTCATGGAAGTAGTTA 906
| ||||||||||||||| || |||| || || || |||||| |||| || ||| |||| |
Sbjct 976 TTAAGAATTGTTGGAAATCACTACCTGAAAACGGTAAAGTGGTTGTTATAGAATTAGTCA 1035
Query 907 CTCCGGATGAAGCAGATAATCATGATGTGATATCC-AACATTGCCTTTGATATGGATC-T 964
|||| ||||| ||||| ||| ||| | | || | |||||||||||||| ||||| | |
Sbjct 1036 CTCCTGATGAGGCAGAGAATGGTGACATCA-ATGCGAACATTGCCTTTGACATGGA-CAT 1093
Query 965 GTTGATGCTCACACAAT-TATCTGGAGGAAAAGAGAGGTCGCGGGCCGAGTATGTAGCTA 1023
||| ||| |||| |||| | ||||| ||||||||| | || | || |||| || ||||
Sbjct 1094 GTTAATGTTCACCCAATGT-TCTGGTGGAAAAGAGCGATCAAGAGCTGAGTTTGAAGCTT 1152
Query 1024 TGGCTGCA 1031
| ||||||
Sbjct 1153 TAGCTGCA 1160
> AT1G76780.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:28816641-28822256 FORWARD LENGTH=5616
Length=5616
Score = 122 bits (66), Expect = 6e-27
Identities = 68/69 (99%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 1212 TTAGAACTTGTAACATCTTATTTTTCTCTTGGAACGAATGATACTAATAACTATGACTAT 1271
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 5616 TTAGAACTTGTAACATCTTATGTTTCTCTTGGAACGAATGATACTAATAACTATGACTAT 5557
Query 1272 AAGTGACAT 1280
|||||||||
Sbjct 5556 AAGTGACAT 5548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62951483430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5