BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476847
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76900.1 | Symbols: AtTLP1, TLP1 | tubby like protein 1 | ch... 2368 0.0
> AT1G76900.1 | Symbols: AtTLP1, TLP1 | tubby like protein 1 |
chr1:28882040-28884545 FORWARD LENGTH=1609
Length=1609
Score = 2368 bits (1282), Expect = 0.0
Identities = 1476/1570 (94%), Gaps = 12/1570 (1%)
Strand=Plus/Plus
Query 175 TGTAACCTTGAGAGAGAGAAAGA-AAATGTCGTTCCGCAGCATAGTTCGTGATGTGAGAG 233
||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 48 TGTAACCTTTAGAGAGAGAAAAACAAATGTCGTTCCGTAGCATAGTTCGTGATGTGAGAG 107
Query 234 ACAGTATTGGAAGTCTGTCGAGGCGTAGTTTCGACTTTAAGCTAAGCAGCATGCACAAAG 293
| ||||| |||||||| |||||||||||||||||||||||| |||||||| || ||||||
Sbjct 108 ATAGTATAGGAAGTCTATCGAGGCGTAGTTTCGACTTTAAGTTAAGCAGCTTGAACAAAG 167
Query 294 AAGGTGGGAAATCTCGTGGTTCGGTTCAAGATTCTCACGAGGAACAACTTGTAGTAACGA 353
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 168 AAGGTGGTAAATCCCGTGGTTCGGTTCAAGATTCTCATGAGGAACAACTTGTAGTAACGA 227
Query 354 TTCAAGAAACCCCGTGGGCGAATCTACCTCCAGAGTTATTGCGCGATGTGATCAAAAGAC 413
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 228 TTCAAGAAACACCGTGGGCGAATCTACCTCCAGAGTTATTACGTGATGTGATCAAAAGAC 287
Query 414 TTGAAGAGAGCGAAAGTGTGTGGCCTGCTCGTAGACATGTGGTTGCTTGTGCTTCTGTTT 473
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 288 TTGAAGAGAGTGAAAGTGTGTGGCCTGCTCGTAGACATGTTGTTGCTTGTGCTTCTGTTT 347
Query 474 GCAGGTCATGGAGAGATATGTGCAAAGAGATTGTTCAAAGTCCCGAGCTCTCGGGCAAAA 533
|||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 348 GCAGGTCATGGAGAGATATGTGTAAAGAGATTGTTCAAAGTCCGGAGCTCTCAGGCAAAA 407
Query 534 TCACATTTCCTGTTTCGCTT-AAACAGCCGGGACCAAGAGATGCAACAATGCAATGCTTT 592
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 408 TCACATTTCCTGTTTCG-TTGAAACAGCCTGGACCAAGAGATGCAACAATGCAATGCTTT 466
Query 593 ATCAAGAGGGATAAATCTAACTTGACTTATCATTTATACCTTTGTCTCAGTCCTGCTTTG 652
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 467 ATCAAAAGGGATAAATCTAACTTGACTTATCATTTATATCTTTGTCTCAGTCCTGCTTTG 526
Query 653 TTGGTTGAGAATGGAAAGTTCCTTCTTTCCGCAAAACGCATAAGAAGAACTACCTACACC 712
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 527 TTGGTTGAGAATGGAAAGTTTCTTCTTTCTGCAAAACGCATAAGAAGAACTACATACACC 586
Query 713 GAGTACGTGATCTCTATGCACGCCGACACCATTTCGAGATCAAGCAGTACTTACATTGGC 772
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 587 GAGTACGTGATCTCTATGCACGCCGACACCATTTCGAGATCAAGCAATACCTACATTGGC 646
Query 773 AAAATCAGGTCTAATTTTCTGGGGACGAAGTTCGTAATATACGATACACAACCTGCATAC 832
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 647 AAAATCAGGTCTAATTTTCTGGGGACGAAGTTTATAATATACGATACACAACCAGCATAC 706
Query 833 AACAGCAACACCGCTCGAGTGGTCCAACCGGTAGGCCTTAGCCGCAGATTTTACTCAAAG 892
|||||||||| |||||||| ||||||||||||||| |||||||||||||| |||||||||
Sbjct 707 AACAGCAACATCGCTCGAGCGGTCCAACCGGTAGGTCTTAGCCGCAGATTCTACTCAAAG 766
Query 893 AGAGTATCTCCCAAAGTACCGAGTGGGAGCTACAAAATTGCGCAGGTTTCTTATGAGCTA 952
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 767 AGAGTCTCTCCCAAAGTACCTAGTGGGAGCTACAAAATTGCGCAGGTTTCTTATGAGCTA 826
Query 953 AACGTTCTTGGTACTCGCGGTCCAAGGAGAATGCATTGTGCGATGAACTCAATTCCCGCC 1012
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 827 AACGTTCTTGGTACCCGTGGTCCGAGGAGAATGCATTGTGCGATGAACTCAATTCCCGCC 886
Query 1013 TCTTCCCTCGCTGAAGGCGGAACCGTGCCTGGACAGCCTGATATCATTGTCCCGCGCTCT 1072
|||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 887 TCTTCCCTTGCGGAAGGCGGAACTGTGCCTGGACAGCCCGATATCATTGTCCCGCGCTCT 946
Query 1073 ATTCTCGACGAATCGTTCCGCAGCATTACCTCCTCTTCGTCGAGAAAAATCACTTACGAT 1132
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 947 ATTCTCGACGAATCGTTCCGCAGCATTACCTCTTCGTCATCGAGAAAAATCACTTACGAT 1006
Query 1133 TACTCGAACGATTTTAGTAGCGCACGGTTTTCCGACATTCTCGGCCCGTTAGGCGAGGAC 1192
|||||||| |||||||| || |||||||||||||||||||| ||||||||| |||| |||
Sbjct 1007 TACTCGAATGATTTTAGCAGTGCACGGTTTTCCGACATTCTTGGCCCGTTAAGCGAAGAC 1066
Query 1193 GAAGAAGCGGCATTAGAAGAAGGGAAAGAGCGGAATTTGCCACCACTTGTGCTTAAGAAC 1252
|||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1067 CAAGAAGTGGTATTAGAAGAAGGGAAAGAGCGGAATTCGCCACCACTTGTGCTTAAGAAC 1126
Query 1253 AAGCCGCCGAGGTGGCATGAACAGCTTCAATGCTGGTGTTTAAACTTCAGGGGACGCGTA 1312
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 1127 AAGCCGCCGAGGTGGCATGAACAGCTTCAGTGTTGGTGTTTAAACTTCAGGGGACGTGTA 1186
Query 1313 ACTGTCGCATCAGTTAAGAACTTTCAGCTGATTGCTGCAAACCAACCTCAGCCCCAGCCT 1372
|| |||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct 1187 ACAGTCGCATCAGTTAAGAACTTTCAGCTCATTGCAGCAAACCAACCACAGCCTCAGCCT 1246
Query 1373 CAACCGCAACCGCAACCTCAAATTCAGCCTCTAACTCAGCCGCAACCGTCGGGTCAGACC 1432
|| || ||||||||||||| || | || |||||||||||||||||||| |||||||||
Sbjct 1247 CAGCCTCAACCGCAACCTC-AA--C--CC-CTAACTCAGCCGCAACCGTCTGGTCAGACC 1300
Query 1433 GATGGTCCCGACAAGATCATATTGCAGTTTGGGAAAGTGGGAAAAGACATGTTCACGATG 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1301 GATGGTCCCGACAAGATCATATTGCAGTTTGGGAAAGTGGGAAAAGACATGTTCACGATG 1360
Query 1493 GATTTCCGGTATCCACTCTCAGCGTTTCAAGCTTTCGCTATCTGTTTGAGCAGTTTCGAT 1552
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1361 GATTTCCGGTATCCGCTCTCTGCGTTTCAGGCTTTCGCTATCTGTTTGAGCAGTTTCGAC 1420
Query 1553 ACGAAACTCGCGTGCGAATAAGTAAAAAAGTCAGCTTTGTATGTAATGTTTTCAGATTTG 1612
|| ||||| || ||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1421 ACAAAACTTGCTTGCGAATAAGTCAAAAACTCAGCTTTGTATGTAATGTTATCAGATTTG 1480
Query 1613 CTTTGGAGATTCTTGTTTCGTGGTGTTTTATTTTTCACCGAGAATCTCAGAATTAGATTT 1672
|||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1481 CTTTGGAGATTCTTGTTTTGTGGTGTTTTATTTT-CACCGAGAATCTCATAATTAGATTT 1539
Query 1673 GTTTTCAAGCTTTCATTGCTTATGTTGTTTATTGGTGCAACCAAAAAGTTAATTCTGAGT 1732
|||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||
Sbjct 1540 GTTT-CAAGCTTTCATTGCTTATGCTGTTTATTGGTGCAACCAAAAAGTTTATTC-GAGT 1597
Query 1733 TTGGTTTTTC 1742
||||||||||
Sbjct 1598 TTGGTTTTTC 1607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87449349390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5