BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476852
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76940.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1426 0.0
> AT1G76940.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28902428-28904311 REVERSE LENGTH=1207
Length=1207
Score = 1426 bits (772), Expect = 0.0
Identities = 1040/1159 (90%), Gaps = 60/1159 (5%)
Strand=Plus/Plus
Query 1 TTTAAGACAAAAGAATCAGAAATTTCGAAATCGAGACGCAACAAATTGATTGAATCAAAA 60
|||||||||||| ||||||||| ||||||||||||| |||| |||||| ||||||| |
Sbjct 1 TTTAAGACAAAATAATCAGAAACTTCGAAATCGAGAAGCAAGAAATTG---GAATCAATA 57
Query 61 GGGATTTGATAAAAATTTTGATTTCGAGAGTGCTTCGGAGCAGAAGAACAAGC-AAGCTA 119
||||||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 58 --GATTTGAGAAAACTTTTGATTTCGAGAGTGCTTCGGAGCAGAAGAACGAGCAAAGCTA 115
Query 120 GGGTTTTCTTCTATTCAAATCCAGATAGAATCGAAGCTATTCATCGAAATTAGGGttttt 179
|||||| | |||| |||||||||| || ||||||| ||||||||||||||||||||||||
Sbjct 116 GGGTTTCCATCTA-TCAAATCCAGCTACAATCGAACCTATTCATCGAAATTAGGGTTTTT 174
Query 180 tttttGCTCCCTTAA--TTT---TTC------CTTCTGATCCTTCGATTTCCATGGCGGA 228
|||||| |||||||| ||| ||| ||||||||||||||||||||||||||||
Sbjct 175 TTTTTGGTCCCTTAATTTTTCCCTTCTAGTAGCTTCTGATCCTTCGATTTCCATGGCGGA 234
Query 229 TGGGTACTGGAACCAGCAGCGACAGCAACATCATCTTCCTAGTGGTCCTCCGAAACGTCC 288
||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 235 TGGGTACTGGAACCAGCAGCGACAGCAACATCATCCTCCTGGTGGTCCTATGAAACGTCC 294
Query 289 CCGTTCCGATTTCGAAGCTCCACCATCAACAATGGCTACAGGGCACGGTGGTGGTTACTA 348
|||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||| ||
Sbjct 295 CCGTTCCGATTTCGAAGCTCCATCATCAACAATGACTATAGGGCACGGTGGTGGTTATTA 354
Query 349 TCCGCGGGATGAGGATCTCGATGTTCCCGATACCAGAACTATCGGTTCAGCTTACGATCG 408
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 355 TCCGCGAGATGAGGATCTCGATGTTCCCGATACTAGAACTATCGGTTCAGCTTACGATCG 414
Query 409 CTATCTCCAGAGCGTGCAAACATCTTCTTTGCAATCAGGAGAAGGTGGTTCTGTTTCCAT 468
||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 415 CTATCTCCAGAGC--G-------------TGCAATCAGGAGAAGGTGGTTCTGTTTCCAT 459
Query 469 GGGAAGA-C--------CaggaggaggaggaggaggTAACGGTCAAACCATTGATGATTT 519
||||||| | ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 460 GGGAAGATCAGGAGGAGGAGGAGGAGGAGGAGGAGGTAACGTTCAAACCATAGATGATTT 519
Query 520 TATGATGAGACGTGGTGGAGTTCTCCCTCTAGACCATGGTCCAAATGGCCATGCCATTGG 579
|||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||
Sbjct 520 TATGTTGAGACGTGGTGGAGTTCTCCCTTTAGACCATGGTCCAAATGGTCACACCATTGG 579
Query 580 TTTTGATCCCCCAGAAGCTGTTGGTAGGCGTAACCGAGAGACACTTCCTTTACCTCCAGA 639
|||||||||||||||| |||||||||||||| | | || ||||| ||||
Sbjct 580 TTTTGATCCCCCAGAACCTGTTGGTAGGCGT---------A-A---CC--TACCTTCAGA 624
Query 640 TGCATCCAACACTTTATATGTTGAAGGACTTCCTTCAAATTGCTCAAGGAGGGAAGTAGC 699
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 625 TGCATCCAACACTTTATATGTTGAAGGACTTCCTTCTAATTGCTCTAGGAGGGAAGTAGC 684
Query 700 TCATATATTTCGACCTTTTGTAGGATACAGAGAAGTGAGACTTGTGACCAAAGACTCCAA 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TCATATATTTCGACCTTTTGTAGGATACAGAGAAGTGAGACTTGTGACCAAAGACTCCAA 744
Query 760 ACATCGCAACGGAGATCCTATTGTTCTTTGTTTTGTTGATTTTACAAACCCTGCCTGTGC 819
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 745 ACATCGGAACGGAGATCCTATTGTTCTTTGCTTTGTTGATTTTACAAACCCTGCCTGTGC 804
Query 820 AGCGACTGCTCTGAGCGCCTTACAAGGCTATCGAATGGACGAAAACGAGTCTGATTCAAA 879
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 805 TGCGACTGCTCTGAGCGCCTTACAAGGCTATCGAATGGACGAAAACGAGTCTGATTCCAA 864
Query 880 GTTCCTGCGGCTCCAGTTTTCTAGAAAACCAGGTTCAAGACCAGGACAACGAGGAAGAAG 939
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 865 GTTCCTGCGGCTCCAGTTTTCTAGGAAACCAGGTTCAAGACCAGGACAAAGAGGAAGAAG 924
Query 940 GTGATGACTCAGGGACATTGTGGTACGTCAACCAAATGGTAATTTGTTGTATCTCCTCTG 999
|||||||||||||||||||||||||||||||||||||||| | |||| ||||||||| ||
Sbjct 925 GTGATGACTCAGGGACATTGTGGTACGTCAACCAAATGGTGACTTGTGGTATCTCCTTTG 984
Query 1000 GCGGAAAGATACATCCTCCCTTTTCAAGTATAATCTCAATGAAATCGCACATGACATTAC 1059
||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| ||
Sbjct 985 AAGGAAATATACATCCTCCCTTTCCAAGTATAATCTCAATGAAATCGCACATTACATCAC 1044
Query 1060 TTGTTGTATCCTTGAAGCAACATGAGTCTAGAGAAACAAAGATTTGCGGAGAGTGTAGCA 1119
|| | || |||||||||||| |||||| |||||||||||||| ||||||||||||| |
Sbjct 1045 TTAT-GT--CCTTGAAGCAACCTGAGTCGAGAGAAACAAAGATGCGCGGAGAGTGTAGAA 1101
Query 1120 TATGAGTTTATAGAAACTG 1138
|||||| ||||||||||||
Sbjct 1102 TATGAGGTTATAGAAACTG 1120
Score = 84.2 bits (45), Expect = 3e-15
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1128 TATAGAAACTGTTTTTGTTCCCTTCCTAGATTTCAAGCTCATATGTCGTGTTAT 1181
|||| | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1139 TATATATACTGTTTTTGTTCCCTTCCTAGATTTCAAGCTCATATGTCATGTTAT 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57981629475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5