BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476856
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76970.1 | Symbols: | Target of Myb protein 1 | chr1:289226... 2495 0.0
AT1G21380.1 | Symbols: | Target of Myb protein 1 | chr1:748563... 811 0.0
> AT1G76970.1 | Symbols: | Target of Myb protein 1 | chr1:28922666-28925404
REVERSE LENGTH=1761
Length=1761
Score = 2495 bits (1351), Expect = 0.0
Identities = 1609/1726 (93%), Gaps = 48/1726 (3%)
Strand=Plus/Plus
Query 1 AGTCAGCAGTTGATTCTAGGACGGCGACTTGACCTGACACCTGAAAAATCCTTACCGTGT 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 41 AGTCAGCAGTTGATTCTAGGACGGCGACTTGACTTGACACCTGAAAAATCCTTACCGTGT 100
Query 61 TTGATAGTTTTTCGATAAACCCTTTAAATTGTTTCATCTTCTTTAAATCTTGAGATTTTA 120
||||||||||||||| |||||||| |||||||||||| || ||||| |||||||| ||||
Sbjct 101 TTGATAGTTTTTCGA-AAACCCTTCAAATTGTTTCATTTTTTTTAAGTCTTGAGACTTTA 159
Query 121 CAAAA-CCTGGCTTGCTCTTGTTTTTGGTTTTGTGCTTATAGG--AAATTTGGAAACTTG 177
|||| ||| ||||||||||||||| ||| | || | ||| |||||||||||||||
Sbjct 160 AAAAATCCTCGCTTGCTCTTGTTTTAGGTCTCCTG-ACA-AGGAAAAATTTGGAAACTTG 217
Query 178 TGGGATTTGATTGATAAGAGTTGTTAAGATGGCAAATGACGCGGCTGCGTGTGCAGAAAG 237
||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 218 TGGGAGTTGATTGATAAGAGTTGTTAAGATGGCAAATGATGCGGCTGCATGTGCAGAAAG 277
Query 238 GGCTACAAATGATATGCTGATTGGTCCAGATTGGGCTATTAACATTGAATTGTGTGATAT 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 278 GGCTACAAATGATATGCTGATTGGTCCAGATTGGGCTATTAACATTGAATTGTGTGATCT 337
Query 298 TATCAACATGGATCCTAGTCAAGCAAAAGAAGCTGTGAAAGTGCTCAAGAAGCGGTTAGG 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 338 TATCAACATGGATCCTAGTCAAGCAAAAGAAGCTGTGAAGGTGCTCAAGAAGCGGTTAGG 397
Query 358 AAGTAAAAACTCTAAAGTCCAGATTCTTGCACTTTATGCATTGGAAACTTTAAGTAAGAA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 AAGTAAAAACTCTAAAGTCCAGATTCTTGCACTTTATGCATTGGAAACTTTAAGTAAGAA 457
Query 418 TTGTGGCGAAAACGTGTACCAGCTTTTCATTGACCGTGATATTTTGA-TAGACATGGTCA 476
||||||||||||||||||||||||| |||||||||||| | | |||| | ||||||||||
Sbjct 458 TTGTGGCGAAAACGTGTACCAGCTTATCATTGACCGTGGTCTATTGAAT-GACATGGTCA 516
Query 477 AACTAGTGAAGAAAAAGCCGGACCTGAATGTGAGGGAAAAGATACTAAGTTTGTTAGACA 536
|| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 517 AAATAGTGAAGAAAAAGCCGGAACTGAATGTGAGGGAAAAGATACTAACTTTGTTAGACA 576
Query 537 CATGGCAAGAAGCTTTTGGTGGACGTGGAGGTCGATACCCACAATACTACAATGCCTATA 596
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 CATGGCAAGAAGCCTTTGGTGGACGTGGAGGTCGATACCCACAATACTACAATGCCTATA 636
Query 597 ACGATCTCAGGTCTGCTGGAATTGAGTTTCCACCTCGAACGGAAAGCAGTCTATCGTTCT 656
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 637 ACGATCTCAGGTCTGCTGGAATTGAGTTTCCGCCTCGAACGGAAAGCAGTCTATCGTTCT 696
Query 657 TTACTCCACCGCAGACTCAGCCAGATGATGATGCTGCTATTCAGGCGTCGTTGCAAGGAG 716
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 697 TTACTCCACCGCAGACTCAGCCAGATGAAGATGCTGCTATTCAGGCTTCGTTGCAAGGAG 756
Query 717 ATGTTGCTTCTAGCCTCAGCTTGGAAGAGATTCAAAGCGCTGAGGGATCAGTTGATGTTT 776
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 757 ATGATGCTTCTAGCCTCAGCCTGGAAGAGATTCAAAGCGCTGAGGGATCAGTTGATGTTT 816
Query 777 TGATAGACATGCTTGGAGCACTTGATCCCGGGAATCCCGAGAGTTTAAAAGAAGAAGTTA 836
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 817 TGATGGACATGCTTGGAGCACATGATCCCGGGAATCCCGAGAGTTTAAAAGAAGAAGTTA 876
Query 837 TAGTTGACTTAGTTGAGCAATGTCGTACTTATCAAAGACGTGTAATGACTCTTGTGAACA 896
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 TAGTAGACTTGGTTGAGCAATGTCGTACTTATCAAAGACGTGTAATGACTCTTGTGAACA 936
Query 897 CTACAACAGATGAGGAACTTCTGTGTCAGGGATTGGCATTAAATGATAATTTGCAGCGTG 956
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 937 CTACAACAGATGAGGAACTTCTGTGTCAGGGATTGGCATTAAACGATAATTTGCAGCATG 996
Query 957 TTCTTCAGCGTCACGATGATATCGCAAAGGTCAGCTCTGTTCCTTCAAATGGAAGGAATA 1016
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 997 TTCTTCAGCGTCACGATGATATCGCAAATGTCGGCTCTGTTCCTTCAAATGGAAGGAATA 1056
Query 1017 CTAGAGCTCCTCCTCCAGTTCAGATTGCCAACATCAATCATGATGTTGAAGATGACGAAT 1076
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1057 CTAGAGCTCCTCCTCCAGTTCAGATTGTTGACATCAATCATGATGATGAAGATGACGAAT 1116
Query 1077 CAGATGATGAGTTTACTCGGCTTGCTCACAGACCACCACCACCACCTACAATGAGACCAG 1136
|||||||||||||| |||||||||||||||| | || || |||||||| ||||||||
Sbjct 1117 CAGATGATGAGTTTGCTCGGCTTGCTCACAGGTCTTCA--AC-ACCTACAAGGAGACCAG 1173
Query 1137 TACATGGTAGTGATTCGGGTATGGTGGATTTCCTTAGTGGGGATGTCTATAAACCTCAAG 1196
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1174 TACATGGTAGTGATTCGGGTATGGTGGATATCCTTAGTGGGGACGTCTATAAACCTCAAG 1233
Query 1197 GC---TCCTCCTCGCAGGGAGTAAAGAAGCCTCCTCAT--------GC-T--T-CTTCTT 1241
|| |||||||| |||||||||||||||||||||| | || | | ||||||
Sbjct 1234 GCAACTCCTCCTCACAGGGAGTAAAGAAGCCTCCTCCTCCTCCTCCGCATACTTCTTCTT 1293
Query 1242 C-TC--CT------GTTTTCGATGATGCAAGTCCACAA-A--GCAAATCCTCTGAGGTAA 1289
| || || |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1294 CCTCTTCTTCTCCTGTTTTCGATGATGCAAGTCCACAACAAAGCAAATCCTCTGAGGTAA 1353
Query 1290 TTAGGAATCTTCCACCTCCGCCTTCAAGGCACAACCAGAGGCAACAGTTCTTTGAGCATC 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 TTAGGAATCTTCCACCTCCGCCTTCAAGGCACAACCAGAGGCAACAGTTCTTTGAGCATC 1413
Query 1350 ACCACTCGAGTAGCGGCTCAGATTCCTCTTACGAGGGACTGACCCGGAACCTTTCTTTGA 1409
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1414 ACCACTCGAGTAGCGGCTCAGATTCCTCTTACGAGGGACAGACCCGGAACCTTTCTTTGA 1473
Query 1410 CAACTAGTGAACCGAAGAAAGAAGAGAAGCCAGAGGATTTGCTTTTCAAAGACCTGGTTG 1469
||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1474 CAAGTAGTGAACCGCAGAAAGAAGAGAAACCAGAGGATTTGCTTTTCAAAGACCTGGTTG 1533
Query 1470 AGTTCGCCAAAACCAGGTCCTCCAA-GCC--CAACAATA---GGTCGCTTTGAGTCTTTT 1523
||||||||||||||||||||||||| ||| ||| |||| ||||||| ||||||||||
Sbjct 1534 AGTTCGCCAAAACCAGGTCCTCCAAAGCCAACAATAATAATAGGTCGCTCTGAGTCTTTT 1593
Query 1524 GCTTGTGGCTTT--ACCATTCAAGttttttttttttttttGGTTTTCAGAGAGTGATGAT 1581
| |||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1594 GTTTGTGGCTTTTTACCATTCAAGTTTTTTTTTTCTTTTGGGTTTTCAGAGAGTGATGAT 1653
Query 1582 GATATTAGAGTGTGCCTTATTTTTTAGAGATAGTATCCGACAATACCAACAACCATACGT 1641
||||||||||||||||||||| ||||||||||||||| || |||||||||||||||| ||
Sbjct 1654 GATATTAGAGTGTGCCTTATTATTTAGAGATAGTATCTGATAATACCAACAACCATATGT 1713
Query 1642 TTTACTTGTCTAACTTCACACTCAAAGGACACAGCTTTAAAATACT 1687
||||||| ||||||||||| | ||| ||||||||||||||||||||
Sbjct 1714 TTTACTTCTCTAACTTCACTC-CAA-GGACACAGCTTTAAAATACT 1757
> AT1G21380.1 | Symbols: | Target of Myb protein 1 | chr1:7485636-7488713
REVERSE LENGTH=1956
Length=1956
Score = 811 bits (439), Expect = 0.0
Identities = 738/877 (84%), Gaps = 41/877 (5%)
Strand=Plus/Plus
Query 160 AGGAAATTTGGAAACTTGTGGGATTTGATTG-ATAAG-AGTTGTTAAGATGGCAAATGAC 217
|||||| |||| ||||| | ||||||||||| | ||| | | || |||||| ||| |
Sbjct 221 AGGAAACTTGG-AACTT-TAGGATTTGATTGAAAAAGCA-ATCTTGCGATGGCGAATAAT 277
Query 218 GCGGCTGCGTGTGCAGAAAGGGCTACAAATGATATGCTGATTGGTCCAGATTGGGCTATT 277
|||||||| ||||| || ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 278 GCGGCTGCTTGTGCTGAGAGGGCTACAAACGATATGCTGATCGGTCCAGATTGGGCTATC 337
Query 278 AACATTGAATTGTGTGATATTATCAACATGGATCCTAGTCAAGCAAAAGAAGCTGTGAAA 337
||||||||| ||||||| |||||||||||||| || ||||||||||||||||| |||||
Sbjct 338 AACATTGAACTGTGTGACATTATCAACATGGAACCAAGTCAAGCAAAAGAAGCAGTGAAG 397
Query 338 GTGCTCAAGAAGCGGTTAGGAAGTAAAAACTCTAAAGTCCAGATTCTTGCACTTTATGCA 397
||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 398 GTGCTCAAGAAACGGTTAGGAAGTAAAAATTCTAAAGTCCAGATTCTTGCTCTTTATGCT 457
Query 398 TTGGAAACTTTAAGTAAGAATTGTGGCGAAAACGTGTACCAGCT-TTTCATTGACCGTGA 456
||||||||||| ||||||||||||||||| | ||||||||||| || ||||||| ||
Sbjct 458 TTGGAAACTTTGAGTAAGAATTGTGGCGAGAGTGTGTACCAGCTCATT-GTTGACCGAGA 516
Query 457 TATTTTGA--TAGACATGGTCAAACTAGTGAAGAAAAAGCCGGACCTGAATGTGAGGGAA 514
|||||| | | || ||||||||| |||||||||| ||||| ||||||| |||||||||
Sbjct 517 TATTTT-ACCT-GATATGGTCAAAATAGTGAAGAAGAAGCCAGACCTGACTGTGAGGGAG 574
Query 515 AAGATACTAAGTTTGTTAGACACATGGCAAGAAGCTTTTGGTGGACGTGGAGGTCGATAC 574
|||||||| ||||| ||||| |||||||||||||||||||||||| | || || ||| |
Sbjct 575 AAGATACTTAGTTTATTAGATACATGGCAAGAAGCTTTTGGTGGAAGCGGCGGAAGATTC 634
Query 575 CCACAATACTACAATGCCTATAACGATCTCAGGTCTGCTGGAATTGAGTTTCCACCTCGA 634
|| || ||||||||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct 635 CCTCAGTACTACAATGCCTATAATGAACTCAGGTCTGCTGGAATTGAATTCCCACCTCGA 694
Query 635 ACGGAAAGCAGTCTATCGTTCTTTACTCCA-C-C-G---CAG---A------CT----C- 674
|| || |||||| || |||||||||||||| | | | ||| | || |
Sbjct 695 ACCGAGAGCAGTGTACCGTTCTTTACTCCACCTCAGACTCAGCCTATTGTTGCTCAGGCA 754
Query 675 A--GC--CAGATGATGATGCTGCTATTCAGGCGTCGT-TGCAAGGAGATGTTGCTTCTAG 729
| || ||||||| ||||||||||||||||| || | ||||| | |||| ||||||| |
Sbjct 755 ACTGCATCAGATGAAGATGCTGCTATTCAGGCCTC-TCTGCAAAGTGATGATGCTTCT-G 812
Query 730 C-CTCAGCTTGGAAGAGATTCAAAGCGCTGAGGGATCAGTTGATGTTTTGATAGACATGC 788
| |||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 813 CACTCAGCATGGAAGAGATTCAAAGCGCTCAGGGATCAGTTGATGTTTTGACAGACATGC 872
Query 789 TTGGAGCACTTGATCCCGGGAATCCCGAGAGTTTAAAAGAAGAAGTTATAGTTGACTTAG 848
|||| || |||||||| | |||| ||| |||| || |||||| ||||||||||||| |
Sbjct 873 TTGGGGCTCTTGATCCAAGTCATCCAGAGGGTTTGAAGGAAGAACTTATAGTTGACTTGG 932
Query 849 TTGAGCAATGTCGTACTTATCAAAGACGTGTAATGACTCTTGTGAACACTACAACAGATG 908
| ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct 933 TCGAGCAATGTCGTACTTATCAAAGACGTGTAATGGCTCTTGTGAATACTACTTCAGATG 992
Query 909 AGGAACTTCTGTGTCA-GGGATTGGCATTAAATGATAATTTGCAGCGTGTTCTTCAGCGT 967
|||||||| ||||||| ||| |||||| | ||||| ||| ||||||| ||||||||||
Sbjct 993 AGGAACTTATGTGTCAAGGG-TTGGCACTGAATGACAATCTGCAGCGCGTTCTTCAGCAC 1051
Query 968 CACGATGATATCGCAAAGGTCAGCTCTGTTCCTTCAA 1004
|| ||||||| ||||||| | |||||||||| |||
Sbjct 1052 CATGATGATAAGGCAAAGGGAAACTCTGTTCCTGCAA 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83383105245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5