BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476859
Length=1862
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76990.1 | Symbols: ACR3 | ACT domain repeat 3 | chr1:289321... 2451 0.0
> AT1G76990.1 | Symbols: ACR3 | ACT domain repeat 3 | chr1:28932162-28935539
FORWARD LENGTH=1991
Length=1991
Score = 2451 bits (1327), Expect = 0.0
Identities = 1477/1548 (95%), Gaps = 15/1548 (1%)
Strand=Plus/Plus
Query 61 cttcttcttcttctgtgtctctctggtctgtctctgtgtaatc-tctgt--t-tctttaa 116
|||||||||||||| ||||||| | ||||||||| ||||||| ||||| | || ||
Sbjct 99 CTTCTTCTTCTTCTCTGTCTCTGT-CTCTGTCTCTCTGTAATCTTCTGTGCTCTCCACAA 157
Query 117 attcgtctctcctcttctctctTGCTGACTCCACAAAATTTGAGCtt-tttttttGAAGT 175
||| |||||||||| |||||| || ||||||||||| ||||||||| ||||||||||||
Sbjct 158 ATTTGTCTCTCCTC-TCTCTC--GCCGACTCCACAAATTTTGAGCTTCTTTTTTTGAAGT 214
Query 176 TCTTGAGAACAAGTG-AAGAGCTTAATATCCACAAGACTCTCTTGTTTCTTTGTTAAATG 234
||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 215 TCTTGAGAACAAGTGAAAGAGCTTAATATCCACAAGA--CTCTTGTTTCTTTCTTAAATG 272
Query 235 GCTAAAGTTTATTGGCCGTATTTCGATCCTGAATATGAGAACTTGAGCACCAGAATCAAT 294
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 273 GCTAAAGTTTATTGGCCTTATTTCGATCCTGAATATGAGAACTTGAGCTCCAGAATCAAT 332
Query 295 CCTCCAAGTGTTTCTATAGATAACACTAGCTGCAAAGAATGCACTCTTGTCAAGGTGGAC 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 333 CCTCCAAGTGTTTCTATAGATAACACTAGCTGCAAAGAATGCACTCTTGTCAAGGTGGAC 392
Query 355 AGTATGAACAAACCTGGAATACTGCTGGAAGTTGTGCAAGTCCTTACCGATCTCGATCTC 414
||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 393 AGTATGAACAAACCTGGAATACTACTTGAAGTTGTGCAAGTCCTAACCGATCTCGATCTC 452
Query 415 ACAATCACCAAAGCATATATCTCTTCTGATGGTGGATGGTTCATGGACGTATTCCATGTC 474
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 ACTATCACTAAAGCTTATATCTCTTCTGATGGTGGATGGTTCATGGACGTATTCCATGTC 512
Query 475 ACTGATCAACAAGGAAACAAGGTTACTGATAGCAAAACCATTGATTACATCGAGAAGGTT 534
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 513 ACCGATCAACAAGGAAACAAGGTTACTGATAGCAAAACCATCGATTACATCGAGAAGGTG 572
Query 535 TTAGGACCAAAGGGTCATGCTTCGGCTTCACAAAACGCTTGGCCTGGTAAAAGGGTCGGT 594
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 573 TTAGGACCAAAGGGTCATGCTTCGGCTTCACAAAACACTTGGCCTGGTAAAAGAGTCGGT 632
Query 595 GTCCATTCATTAGGCGACCACACATCGATAGAGATTATTGCTCGTGATCGTCCTGGTCTC 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 GTCCATTCATTAGGCGACCACACATCGATAGAGATTATTGCTCGTGATCGTCCTGGTCTC 692
Query 655 TTGTCTGAGGTCTCAGCCGTACTAGCAGACCTCAACATCAATGTGGTGGCTGCTGAAGCA 714
||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 693 TTGTCGGAGGTTTCAGCCGTACTAGCAGACCTCAACATTAATGTGGTGGCAGCTGAAGCA 752
Query 715 TGGACTCACAACCGTAGGATCGCGTGTGTCCTCTATGTGAATGACAATGCAACTTCTAGA 774
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 753 TGGACTCACAACCGTAGGATTGCGTGTGTCCTCTATGTGAATGACAATGCAACTTCTAGA 812
Query 775 GCCGTTGATGACCCAGAAAGATTGTCTGCCATGGAAGAACAGCTCAACAACGTGCTGCGT 834
||||||||||| ||||||||||||||| |||||||||||||||| ||||| |||||||||
Sbjct 813 GCCGTTGATGATCCAGAAAGATTGTCTTCCATGGAAGAACAGCTTAACAATGTGCTGCGT 872
Query 835 GGGTGTGAACAAGAAGATGAGAAATTTGCTCGGACGAGTCTCTCCATTGGGTCAACTCAC 894
||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 873 GGGTGCGAAGAACAAGATGAGAAATTTGCTCGGACGAGTCTCTCCATTGGGTCGACTCAC 932
Query 895 GTTGATCGAAGGCTTCATCAGATGTTTTTCGCTGATAAAGACTATGAAGCAGTGACCAAG 954
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||
Sbjct 933 GTTGATCGAAGGCTTCATCAGATGTTTTTCGCTGATAGAGACTACGAAGCAGTGACTAAG 992
Query 955 CTTGATGATTTTGCTTCTCGTGGACTCGAGCCCAAAATCACGGTTGAGCATTGCGAAGAG 1014
|||||||||| ||||||| | ||| |||||||||||||||||||||||||||| ||||||
Sbjct 993 CTTGATGATTCTGCTTCTTGCGGATTCGAGCCCAAAATCACGGTTGAGCATTGTGAAGAG 1052
Query 1015 AAAGGTTACTCTGTGATAAACGTGAACTGCGAGGATCGACCAAAGCTCATGTTTGACATT 1074
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1053 AAAGGTTACTCCGTGATAAACGTGAGCTGCGAGGATCGACCAAAGCTCATGTTTGACATT 1112
Query 1075 GTATGCACGCTTACGGATATGCAATACATTGTGTTTCACGCCACGATTTCATCAAGCGGC 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 GTATGCACGCTTACGGATATGCAATACATTGTGTTTCACGCCACGATTTCATCAAGCGGC 1172
Query 1135 TCTCATGCTTCTCAGGAGTATTTCATTAGACACAAAGACGGTTGCACTCTTGACAC---A 1191
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1173 TCTCATGCTTCTCAGGAGTATTTCATCAGACACAAAGACGGTTGCACTCTTGACACAGAA 1232
Query 1192 GGAGAGAAAGAGAGAGTTATCAAATGTCTAGAAGCCGCAATCCATAGACGAGTCAGCGAG 1251
|||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1233 GGAGAGAAAGAGAGAGTTGTCAAATGTCTGGAAGCTGCAATCCATAGACGAGTCAGCGAG 1292
Query 1252 GGTTGGAGTTTAGAGCTCTGCGCAAAGGACAGAGTTGGATTACTGTCGGAAGTGACAAGG 1311
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 GGTTGGAGTTTGGAGCTCTGCGCAAAGGACAGAGTTGGATTACTGTCGGAAGTGACAAGG 1352
Query 1312 ATTCTGAGAGAGCACGGGCTATCAGTGTCGAGAGCTGGTGTGACAACAGTAGGAGAACAA 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 ATTCTGAGAGAGCACGGGCTATCAGTGTCGAGAGCTGGTGTGACAACAGTAGGAGAACAA 1412
Query 1372 GCCGTCAACGTTTTCTATGTGAAAGATGCTTCAGGGAATCCAGTGGACGTGAAGACGATT 1431
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1413 GCCGTCAACGTTTTCTATGTGAAAGATGCTTCAGGGAATCCAGTGGATGTGAAGACGATT 1472
Query 1432 GAGGCGTTACGCGGAGAGATCGGACACAGTATGATGATTGACTTCAAGAATAAAGTTCCG 1491
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1473 GAGGCGTTACGCGGAGAGATTGGACACAGTATGATGATTGACTTCAAGAATAAAGTTCCG 1532
Query 1492 AGCAGAAAATGGAAAGAAGAAGGTCAAGCCGGAACAGGAGGAGGATGGGCCAAAACCACT 1551
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1533 AGCAGAAAATGGAAAGAAGAAGGTCAAGCCGGAACAGGAGGAGGATGGGCCAAAACCAGT 1592
Query 1552 TTCTTCTTTGGGAATTTGCTGGAGAAGTTGCTGCCTTGAGAGAAAAGG 1599
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1593 TTCTTCTTTGGGAATTTGCTGGAGAAGTTACTGCCTTGAGAGAAAAGG 1640
Score = 353 bits (191), Expect = 3e-96
Identities = 247/271 (91%), Gaps = 15/271 (6%)
Strand=Plus/Plus
Query 1597 AGGGATTTTGGTGGTTTGCCCGAAACT-AAACCGAACCAAAACTGGTTTTCGG-----TT 1650
|||||||||||||||||||||| || | ||||||||||||||||||||||||| ||
Sbjct 1722 AGGGATTTTGGTGGTTTGCCCG-AAGTCAAACCGAACCAAAACTGGTTTTCGGTTACTTT 1780
Query 1651 --AC-TTAGTCATAGTAAAATGAACATGTCTATAAAAGAATAATATGCAACTCTTCCTAT 1707
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1781 AGACTTTAGTCATAGTAAAATGAACATGTCTATAAATGAATAATATGCAACTCTTCCAAT 1840
Query 1708 TGGAAGGCTTGCTTTTGTCTATGTAATATCGAT-C--CTTGTTATGTA-TTATCTTTGGC 1763
||| |||||||||||||||||||||||||| || | ||||||||||| |||||||||||
Sbjct 1841 TGGTAGGCTTGCTTTTGTCTATGTAATATCAATCCTTCTTGTTATGTATTTATCTTTGGC 1900
Query 1764 CAAATGTGATATTTTCTGTAGTTT-AATCTCTTCTTTCCCTTCTATTTTGTAACTTCTTT 1822
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 1901 CAAATGTGATATTTTCTGTAGTTTTAATCTCTTCTTTTCCTTCTATTTTGTAACTTCTTC 1960
Query 1823 GAATCTTGAATATCAATATCATTGCAGTGAG 1853
||||||| ||| |||||||||||||||||||
Sbjct 1961 GAATCTTTAATGTCAATATCATTGCAGTGAG 1991
Score = 111 bits (60), Expect = 2e-23
Identities = 60/60 (100%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1 ACAGAAAGAAGGGTTTCAATCTCATTAAAGAGAAAAGAAACGATTAGAGAAAGAGAAGAG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACAGAAAGAAGGGTTTCAATCTCATTAAAGAGAAAAGAAACGATTAGAGAAAGAGAAGAG 60
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92168200620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5