BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476863
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily p... 1845 0.0
AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily prote... 977 0.0
> AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
protein | chr1:28940750-28942596 FORWARD LENGTH=1416
Length=1416
Score = 1845 bits (999), Expect = 0.0
Identities = 1244/1356 (92%), Gaps = 41/1356 (3%)
Strand=Plus/Plus
Query 1 AATCCTTATTTCCCTACATTTGTCGTCTTTTGATGTCCTAAACTCAGAGATATTTAtctc 60
||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 1 AATCCTTATTTCCTTACATTTGTCGTCTTTTGATGTCATAGACTCAGAGATATTTAT-T- 58
Query 61 tcccctctctctctctctc-tctctcattctctTATTTACTTTTGATCTTGTGGTGTTAG 119
| || ||| |||||||| | |||||||||| |||||||||||||||| ||||||||||
Sbjct 59 T-ATCT-TCTTTCTCTCTCATTTCTCATTCTCATATTTACTTTTGATCTCGTGGTGTTAG 116
Query 120 AATCAAAGAAACCGCTT-AAAGATGGTGAGTGAAGGAGCAACAAGAAAGGAACTTAACCT 178
||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 117 AATCAAAGAAACCGCTTCAAGGATGGTGAGTGAAGGAGCAACAAGAAAAGAACTTAACCT 176
Query 179 ATGCTTCGAGAAGATGAAGATGGAAAGAATCGTGATCTCTGAGTGGAAAGATATCCCTGT 238
|| |||||||| |||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 177 CTGTTTCGAGAATATGAAGATGGAAGGAGTTTTGATCTCTGAGTGGAAAGATATCCCTGT 236
Query 239 GGAGCTTCTTATGAGGATCCTAAACCTTGTTGATGATCGGACGGTGATCATTGCTTCTTG 298
||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 237 GGAGCTTCTCATGAAGATTTTAAACCTTGTTGATGATCGGACTGTGATCATTGCTTCTTG 296
Query 299 TATTTGTAGTGGTTGGAGAGATGCTATTTCCCTTGGCCTCACTCGTCTCTCCCTCTCTTG 358
|||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 297 TATTTGTAGTGGCTGGAGAGATGCTGTTTCCCTTGGCCTCACTCGCCTCTCCCTCTCTTG 356
Query 359 GTGCAAGAAGAATATGAACAGTTTGGTTCTTTCTCTTGCTCCCAAATTCGTAAAGCTTCA 418
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 357 GTGCAAGAAGAATATGAACAGTTTGGTTCTATCTCTTGCTCCCAAATTCGTAAAGCTTCA 416
Query 419 GACTTTAGTACTGCGACAAGACAAACCGCAGCTTGAGGACAGCGCGGTGGAAGCCATAGC 478
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 417 GACTTTAGTACTGCGACAGGACAAACCGCAGCTTGAGGACAACGCGGTGGAAGCCATAGC 476
Query 479 AAATCACTGTCATGAGCTACACGATTTGGATTTAAGCAAAAGCTTGAAACTTACTGACCA 538
||||||||||||||||||||| |||||||| ||||||||||||| |||| | ||||||||
Sbjct 477 AAATCACTGTCATGAGCTACAAGATTTGGACTTAAGCAAAAGCTCGAAAATCACTGACCA 536
Query 539 TTCCCTATATTCTCTGGCTCGTGGTTGTACTAACCTCACTAAGCTCAACCTTAGTGCCTG 598
|||||||||||| || |||||||||||||||||||| ||||| ||||||||||| | |||
Sbjct 537 TTCCCTATATTCACTTGCTCGTGGTTGTACTAACCTGACTAAACTCAACCTTAGCGGCTG 596
Query 599 CACTTCGTTCAGCGACACTGCTCTCGCGCATTTGACAAGATTTTGCAGGAAGCTCAAAAT 658
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 597 CACTTCGTTCAGCGACACTGCTCTTGCGCATTTGACAAGATTTTGCAGGAAGCTCAAAAT 656
Query 659 TCTGAATCTTTGTGGTTGTGTTGAAGCTGTATCTGACAATACATTGCAGGCTATTGGAGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCTGAATCTTTGTGGTTGTGTTGAAGCTGTATCTGACAATACATTGCAGGCTATTGGAGA 716
Query 719 AAACTGCAATCAGTTGCAGTCACTAAACTTGGGATGGTGTGAGAATATAAGTGATGATGG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AAACTGCAATCAGTTGCAGTCACTAAACTTGGGATGGTGTGAGAATATAAGTGATGATGG 776
Query 779 AGTTATGAGTTTAGCTTATGGTTGTCCTGATTTAAGAACCCTTGATCTTTGTGGTTGTGT 838
||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 777 AGTTATGAGTTTAGCTTATGGTTGTCCTGATTTAAGAACTCTTGATCTTTGTAGCTGTGT 836
Query 839 TCTAATTACAGATGAGAGTGTTGTGGCTTTGGCGAATCGGTGTATACACTTGAGGTCATT 898
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 837 TCTAATCACAGATGAGAGTGTTGTGGCTTTGGCGAATCGGTGCATTCACTTGAGGTCATT 896
Query 899 GGGATTATACTACTGCAGAAACATTACCGACAGAGCGATGTACTCTTTAGCTCAGAGCGG 958
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 897 GGGGTTATACTACTGCAGAAACATTACAGACAGAGCAATGTACTCTTTAGCTCAGAGCGG 956
Query 959 AGTAAAGAACAAACACGAGATGTGGCGAGCGGTAAAGAAAGGCAAATTCGATGAAGAAGG 1018
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 957 AGTCAAGAACAAACACGAGATGTGGCGAGCGGTAAAGAAAGGAAAATTCGATGAAGAAGG 1016
Query 1019 ACTAAGAAGCCTTAACATTAGCCAATGCACTTACCTAACACCTTCAGCGGTTCAAGCGGT 1078
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1017 ACTAAGAAGCCTTAACATTAGTCAATGCACTTACCTAACACCTTCAGCTGTTCAAGCTGT 1076
Query 1079 CTGCGATACATTCCCTGCACTCCACACTTGCTCAGGCAGGCATTCACTTGTCATGAGCGG 1138
||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1077 CTGTGATACATTCCCTGCTCTCCACACTTGTTCAGGCAGACATTCACTTGTCATGAGCGG 1136
Query 1139 TTGTCTGAATCTACAATCTGTTCATTGTGCTTGTATCCTTCAGGCTCACCGGGCTCACCG 1198
|||| ||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1137 TTGTTTGAATCTACAATCTGTTCATTGTGCTTGTATCCTTCA-----A--G--CTCACCG 1187
Query 1199 CACCCACACCGCTTT-CCCTCACCCGGCTCATTGAACCGGTGTGTG-G--------T--A 1246
||| ||||||| ||| |||||||||||| ||||||| ||||||||| | | |
Sbjct 1188 CACTCACACCG-TTTACCCTCACCCGGCGCATTGAAACGGTGTGTGAGCCAGAGGGTCTA 1246
Query 1247 -T--------GT--GTGT--ACATACATATAAGCTTATGGTCTAAATAAAGCTTCTTTAA 1293
| || |||| |||||||||||| | |||||| | |||||||||||||| |
Sbjct 1247 CTACTCTCTAGTATGTGTGTACATACATATAACCATATGGTGTTAATAAAGCTTCTTTGA 1306
Query 1294 GTTTCTTCTTTGTCTTTGATACAATCTCAAGATTTT 1329
||| |||||||||||||||| |||||| ||||||||
Sbjct 1307 GTTCCTTCTTTGTCTTTGATGCAATCTTAAGATTTT 1342
> AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protein
| chr1:7497141-7499579 FORWARD LENGTH=1408
Length=1408
Score = 977 bits (529), Expect = 0.0
Identities = 898/1075 (84%), Gaps = 30/1075 (3%)
Strand=Plus/Plus
Query 137 AAAGATGGTGAGT-GAAGGAGCAA-CAAGAAAGGAACTTAACCTA-TG-CTTCGAGAAGA 192
||||||||||| | | ||||| || || | |||||| ||| | || ||| ||||||
Sbjct 129 AAAGATGGTGA-TGGGAGGAG-AAGCATCCATGGAACTGGACC-AGTGTTTTC-AGAAGA 184
Query 193 TGAAGATGGAAAGAATCGT-GATCTCTGAGTGGAAAGATATCCCTGTGGAGCTTCTTATG 251
||||||||||| ||||| | |||| ||||||||||||||||||||||||||||| |||
Sbjct 185 TGAAGATGGAAGGAATC-TCGATCAAAGAGTGGAAAGATATCCCTGTGGAGCTTCTGATG 243
Query 252 AGGATCCTAAACCTTGTTGATGATCGGACGGTGATCATTGCTTCTTGTATTTGTAGTGGT 311
|||||||| ||||||||||||||| | || || |||||||| || |||| | |||
Sbjct 244 AGGATCCTTTCCCTTGTTGATGATCGTAATGTCATTGTTGCTTCTGGTGTTTGCACTGGC 303
Query 312 TGGAGAGATGCTATTTCCCTTGGCCTCACTCGTCTCTC-CCTCTCTTGGTGCAAGAAGAA 370
|||||||||||||| || ||||||||||||||||| | || ||||||||||| || ||
Sbjct 304 TGGAGAGATGCTATCTCTTTTGGCCTCACTCGTCTC-CGTCTATCTTGGTGCAACAACAA 362
Query 371 TATGAACAGTTTGGTTCTTTCTCTTGCTCCCAAATTCGTAAAGCTTCAGACTTT-AGTAC 429
|||||||| |||||||||||||||| |||||| || |||||||| |||||||| | | |
Sbjct 363 CATGAACAGCTTGGTTCTTTCTCTTGTTCCCAAGTTTGTAAAGCTGCAGACTTTAAAT-C 421
Query 430 TGCGACAAGACAAACCGCAGCTTGAGGACAGCGCGGTGGAAGCCATAGCAAATCACTGTC 489
| | || ||||||||||| || ||||||| || ||||| ||||||||||||||||| |
Sbjct 422 TAAGGCAGGACAAACCGCAACTAGAGGACAATGCAGTGGAGGCCATAGCAAATCACTGCC 481
Query 490 ATGAGCTACACG-ATTTGGATTTAAGCAAAAGCTTGAAACTTACTGACCATTCCCTATAT 548
||||| |||| | | || ||| | ||||||||||||||| |||| |||| ||| || |||
Sbjct 482 ATGAGTTACAAGAACTT-GATCTCAGCAAAAGCTTGAAAATTACAGACCGTTCACTTTAT 540
Query 549 TCTCTGGCTCGTGGTTGTACTA-ACCTCACTAAGCTCAACCTTAGTGCCTGCACTTCGTT 607
| || |||| |||||| | | ||||||| || ||||||||||||| ||||||||| ||
Sbjct 541 GCACTTGCTCATGGTTG-CCCAGACCTCACAAAACTCAACCTTAGTGGCTGCACTTCATT 599
Query 608 CAGCGACACTGCTCTCGCGCATTTGACAAGATTTTGCAGGAAGCTCAAAATTCTGAATCT 667
||||||||||||| | ||| ||||||| ||||| ||||| ||||| ||| || |||||||
Sbjct 600 CAGCGACACTGCTATTGCGTATTTGACCAGATTCTGCAGAAAGCTTAAAGTTTTGAATCT 659
Query 668 TTGTGGTTGTGTTGAAGCTGTATCTGACAATACATTGCAGGCTATTGGAGAA-AACTGCA 726
||| || ||||| |||||||| |||||||| | ||| |||||||||| ||| |||||||
Sbjct 660 TTGCGGATGTGTCAAAGCTGTAACTGACAATGCCTTGGAGGCTATTGG-GAATAACTGCA 718
Query 727 ATCAGTTGCAGTCACTAAACTTGGGATGGTGTGAGAATATAAGTGATGATGGAGTTATGA 786
||||| |||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 719 ATCAGATGCAGTCACTAAACTTGGGATGGTGTGAGAATATCAGTGATGATGGGGTAATGA 778
Query 787 GTTTAGCTTATGGTTGTCCTGATTTAAGAACCCTTGATCTTTGTGGTTGTGTTCTAATTA 846
||||||||||||| ||||| ||| | || |||||||| || || || |||||||| ||||
Sbjct 779 GTTTAGCTTATGGCTGTCCAGATCTCAGGACCCTTGACCTCTGCGGCTGTGTTCTTATTA 838
Query 847 CAGATGAGAGTGTTGTGGCTTTGGC-GAATCGGTGTATACACTTGAGGTCATTGGGATTA 905
||||||||||||| || ||| | || || | ||||| | |||||||||||| |||| ||
Sbjct 839 CAGATGAGAGTGTGGTAGCTCTAGCAGACT-GGTGTGTCCACTTGAGGTCACTGGGGCTA 897
Query 906 TACTACTGCAGAAACATTACCGACAGAGCGATGTACTCTTTAGCTCAGAGCGGAGTAAAG 965
||||| ||||||||||| || |||||||| |||||||| ||||||| ||||| ||||||
Sbjct 898 TACTATTGCAGAAACATAACAGACAGAGCAATGTACTCGCTAGCTCAAAGCGGGGTAAAG 957
Query 966 AACAAACACGAGAT-GTGGCGAGCGGTAAAGAAAGGCAAATTCGATGAAGAAGGACTAAG 1024
||||||| || ||| |||| | |||| |||||||| |||| ||||||||||||||| ||
Sbjct 958 AACAAAC-CGGGATCGTGGAAATCGGTTAAGAAAGGTAAATACGATGAAGAAGGACTGAG 1016
Query 1025 AAGCCTTAACATTAGCCAATGCACTTACCTAACACCTTCAGCGGTTCAAGCGGTCTGCGA 1084
||| || |||||||||||||||||| ||| |||||||||||||||||||| || |||||
Sbjct 1017 AAGTCTCAACATTAGCCAATGCACTGCCCTTACACCTTCAGCGGTTCAAGCTGTTTGCGA 1076
Query 1085 TACATT-CCCTGCACTCCACACTTGCTCAGGCAGGCATTCACTTGTCATGAGCGGTTGTC 1143
| |||| ||| ||||| ||||| |||||||| |||||||| |||||||||||||| ||||
Sbjct 1077 TTCATTTCCC-GCACTTCACACATGCTCAGGAAGGCATTCGCTTGTCATGAGCGGCTGTC 1135
Query 1144 TGAATCT-A-CAATCTGTTCATTGTGCTTGTATCCTTCAGGCTCACCGGGCTCAC 1196
|||| || | ||| |||| || ||||||||||||||||||||||| || || |||
Sbjct 1136 TGAA-CTTAACAA-CTGTGCACTGTGCTTGTATCCTTCAGGCTCATCGTGCACAC 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65411310135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5