BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476868 Length=1101 Score E Sequences producing significant alignments: (Bits) Value AT1G77060.1 | Symbols: | Phosphoenolpyruvate carboxylase famil... 1668 0.0 AT1G21440.1 | Symbols: | Phosphoenolpyruvate carboxylase famil... 787 0.0 > AT1G77060.1 | Symbols: | Phosphoenolpyruvate carboxylase family protein | chr1:28951685-28953509 REVERSE LENGTH=1199 Length=1199 Score = 1668 bits (903), Expect = 0.0 Identities = 1038/1104 (94%), Gaps = 6/1104 (1%) Strand=Plus/Plus Query 1 GTGGGTCAGAGTCCAACTCGATTTAGAGAG-AGAACAAGACTTATTC-AAGCTTCGAACA 58 ||||||||||||| ||||||| |||||||| |||| || |||| ||| | |||||||| | Sbjct 3 GTGGGTCAGAGTCTAACTCGA-TTAGAGAGAAGAA-AAAACTTGTTCGAGGCTTCGAAGA 60 Query 59 ATGTCGATGTTAATGGCTGTGAAAACCACTTCGCTCTGTTGCAGCAGCTTAAACCTGACG 118 |||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| || Sbjct 61 ATGTCGATGTTAATGGCTGTCAAAACAACTTCACTCTGTTGTAGCAGCTTAAACCTTACA 120 Query 119 GCTTCACCAACATTCCGACGGAACCCACGAGCGGCGAGATTGATGAATCCGACGGCGAGA 178 ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| Sbjct 121 GCTTCACCAACATTCCGACGGAACCCACGCGCGGCGAGATTGGTGAATCCGACAGCGAGA 180 Query 179 ATCCAAACACGTATTCATCGTCTGATTGAAGAACAAGGCATTGTTCTCATGCCTGGATGC 238 |||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||| Sbjct 181 ATCCAAACACGTTTTCATCGCCTGATTGAAGAACAAGGCATTGTGCTTATGCCTGGATGC 240 Query 239 TACGACGCCTTATCGGCGGCTATTGTGCAGCAAACCGGATTCTCCGCTGGTTTTATATCC 298 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TACGATGCCTTATCCGCGGCTATTGTGCAGCAAACCGGATTCTCCGCTGGTTTTATATCC 300 Query 299 GGTTACGCCTTATCCGCTTCTCTTCTGGGAAAACCCGATTTCGGTTTGCTAACACCACCG 358 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 301 GGTTACGCCTTATCCGCTTCTCTCCTGGGAAAACCCGATTTCGGTTTGCTAACACCACCG 360 Query 359 GAGATGGCTGCGACGGCAAGGTCGGTGTGTGCGTCAGCTCCAAATATACCAATCATTGCA 418 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 361 GAGATGGCTGCGACGGCAAGGTCGGTGTGTGCGTCAGCTCCTAATATACCCATCATTGCA 420 Query 419 GATGCTGATACCGGTGGTGGAAATGCGCTTAACGTTCAAAGAACCGTAAAGGATTTGATT 478 ||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| Sbjct 421 GATGCTGATACCGGTGGAGGAAATGCGCTAAACATTCAAAGAACCGTAAAGGATTTGATT 480 Query 479 GCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAAGCATGGCCAAAGAAGTGTGGTCAT 538 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GCAGCTGGTGCTGCTGGTTGCTTCCTTGAGGACCAAGCATGGCCAAAGAAGTGTGGTCAT 540 Query 539 ATGCGTGGTAAACAGGTGATACCAGCTGAAGAGCATGCCACTAAAATAGCATCAGC-CAG 597 |||||||||||||||||||||||||| ||||| |||||| | |||||||||||||| | | Sbjct 541 ATGCGTGGTAAACAGGTGATACCAGCAGAAGAACATGCCGCAAAAATAGCATCAGCTC-G 599 Query 598 AGACGCTATCGGAGACTCTGACTTCTTCCTTGTTGCAAGAACAGATGTGCGTGCTACTTC 657 ||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 600 AGATGCTATTGGAGACTCTGACTTCTTCCTTGTCGCAAGAACAGACGTGCGTGCTACTTC 659 Query 658 TGCAAAATCAGGTCTTGAAGACGCCATTGCGCGTGTTAATCTCTACATGGAGGCGGGAGC 717 |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 660 TGCAAAATCAGGGCTTGAAGACGCCATTGCACGTGTTAATCTATACATGGAGGCAGGAGC 719 Query 718 TGATGCATCATTTGTAGAGGCACCGAGAGACGACGATGAGCTCAAGGAAATTGGAAAACG 777 |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 720 TGATGCTTCCTTTGTAGAGGCACCAAGAGACGACGATGAGCTCAAGGAAATTGGAAAACG 779 Query 778 CACAAAAGGTTATAGAGTTTGCAACATGATTGAAGGAGGAGTCACACCATTGCACACGCC 837 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 780 CACAAAAGGTTATAGAGTTTGCAACATGATTGAAGGAGGAGTCACACCATTACACACGCC 839 Query 838 TGTTGAGCTTAAAGAAATGGGGTTTCACTTGATCGTTCACCCGCTTACCGCACTCTATGC 897 || |||||||||||||||||| || |||||||| |||||||| ||||||||||||||||| Sbjct 840 TGATGAGCTTAAAGAAATGGGATTCCACTTGATAGTTCACCCCCTTACCGCACTCTATGC 899 Query 898 ATCGACTCGAGCTCTGGTTGATGTTCTCAAGACTCTTAAAGAAAACGGAAGCACTCGAGA 957 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 900 ATCGACTCGAGCTCTGGTCGATGTTCTCAAGACTCTTAAAGAAAACGGTAGCACTCGAGA 959 Query 958 TCACTTGCAAAAGATGGCTACTTTTGAGGAATTCAATAGTTTAGTGGATTTAGATTCATG 1017 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 960 TCACTTGCAAAAGATGGCTACTTTTGAGGAATTCAATAGTTTGGTGGATTTAGATTCGTG 1019 Query 1018 GTTTGAGCTCGAAGCTCGCTATTCAAACCTCAGGAACGCTCTTAGGACAACAAAATCATG 1077 ||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||| Sbjct 1020 GTTTGAGCTTGAAGCTCGCTATTCAAACCTCAGAAACGCTCTTGGGACAACCAAATCATG 1079 Query 1078 AAGATAGACACAACtttttttttt 1101 ||||||| ||| |||||||||| Sbjct 1080 AAGATAGGGACATTTTTTTTTTTT 1103 > AT1G21440.1 | Symbols: | Phosphoenolpyruvate carboxylase family protein | chr1:7502159-7504175 REVERSE LENGTH=1249 Length=1249 Score = 787 bits (426), Expect = 0.0 Identities = 856/1059 (81%), Gaps = 47/1059 (4%) Strand=Plus/Plus Query 44 TTCA-AGCTTCGAACAATGTCGATGTTAATGGCTGTGAAAACCACTTCGCTCTGTTGCAG 102 |||| ||||||| | |||||||||||||||||| | ||| ||||||| |||| || Sbjct 58 TTCAGAGCTTCG-AGAATGTCGATGTTAATGGCGGCCAAATCCACTTCACTCT-TT---- 111 Query 103 CAGCTTAAA-CCTGACGGCTTCA-CCAACATTCCGACGGAACCCACGAGCGGCG--AGAT 158 |||| ||| ||| || |||| | || | | | | ||||| | |||||| |||| Sbjct 112 -AGCTCAAACCCT-ACAATTTCAGCTAA-AATAGGGCAAAACCCTC--GCGGCGTCAGAT 166 Query 159 TGATGAATCCGACGGCGAGAATCCAAACACGTATTCATCGTCTGATTGAAGAACAAGGCA 218 | | ||||||||| |||||| || ||||| |||| |||||||||||||| ||||| Sbjct 167 CGGTTTATCCGACGGTGAGAATGCAGTCACGTGTTCACCGTCTGATTGAAGAGCAAGGTG 226 Query 219 TTGTTCTCATGCCTGGATG-CTACGACGCCTTATCGGCGGCTATTGTGCAGCAAACCGGA 277 ||| || || || ||| | ||||||||| ||||| ||||||||||||||||| |||||| Sbjct 227 CTGTGCTTATTCCCGGA-GTCTACGACGCATTATCTGCGGCTATTGTGCAGCAGACCGGA 285 Query 278 TTCTCCGCTGGTTTTATATCCGGTTACGCCTTATCCG-CTTCTCTTCTGGGAAAACCCGA 336 |||||||| | || || |||||||||||| | |||| | | ||| |||||||||| || Sbjct 286 TTCTCCGCCGCATTAATCTCCGGTTACGCCCTCTCCGCCGTAACTT-TGGGAAAACCAGA 344 Query 337 TTTCGGTTTGCTAACACCACCGGAGATGGCTGCGACGGCAAGGTCGGTGTGTGCGT-CAG 395 |||||||||| ||||||| ||||||||||| || ||||| || || |||||||| | | | Sbjct 345 TTTCGGTTTGATAACACCTCCGGAGATGGCAGCAACGGCGAGATCAGTGTGTGC-TGCGG 403 Query 396 CTCCAAATATACCAATCATTGCAGATGCTGATACCGGTGGTGGAAATGCGCTTAACGTTC 455 ||||||| || ||||||||||||||||| ||||| ||||| |||||||| || || |||| Sbjct 404 CTCCAAAGATTCCAATCATTGCAGATGCAGATACTGGTGGAGGAAATGCTCTCAATGTTC 463 Query 456 AAAGAACCGTAAAGGATTTGATTGCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAAG 515 |||||||||| ||||| || || ||||||||||||||||||||||||||||||||||| | Sbjct 464 AAAGAACCGTCAAGGACTTAATCGCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAGG 523 Query 516 CATGGCCAAAGAAGTGTGGTCATATGCGTGGTAAACAGGTGATACCAGCTGAAGAGCATG 575 |||||||||||| |||||| ||||||||||| ||| |||| ||||| || || || || | Sbjct 524 CATGGCCAAAGAGGTGTGGACATATGCGTGGCAAAGAGGTCATACCTGCGGAGGAACACG 583 Query 576 CCACTAAAATAGCATCAGCCAGAGACGCTATCGGAGACT-CTGACTTCTTCCTTGTTGCA 634 | |||||||||||||||| ||||||||||| ||||| | ||||||| || || | || Sbjct 584 CTGCTAAAATAGCATCAGCAAGAGACGCTATTGGAGA-TGCTGACTTTTTTCTAATCGCT 642 Query 635 AGAACAGATG-TGCGTGCTACTT-CTGCAAAATCAGGTCTTGAAGACGCCATTG-CGCGT 691 || || |||| | ||||| |||| | |||||| |||| ||| ||||||||||| | ||| Sbjct 643 AGGACTGATGCT-CGTGC-ACTTTCCGCAAAAACAGGACTTTCAGACGCCATTGAC-CGT 699 Query 692 GTTAATCTCTACATGGAGGCGGGAGCTGATGCATCATTTGTAGAGGCACCGAGAGACGAC 751 | |||||| || |||||||| ||||||||||| || ||||| ||||||||||| ||||| Sbjct 700 GCTAATCTTTATATGGAGGCAGGAGCTGATGCTTCCTTTGTTGAGGCACCGAGGGACGAT 759 Query 752 GATGAGCTCAAGGAAATTGGAAAACGCACAAAAGGTTATAGAGTTTGCAACATGATTGAA 811 || ||||| |||||||| |||| |||||||||||||| ||| | || |||||| ||||| Sbjct 760 GACGAGCTTAAGGAAATCGGAAGGCGCACAAAAGGTTACAGACTGTGTAACATGCTTGAA 819 Query 812 GGAGGA-GTCACACCATTGCACACGCCTGTTGAGCTTAAAGAAATGGGGTTTCACTTGAT 870 || ||| | ||| |||||||| ||||||| |||||||||||||||||| ||||||||||| Sbjct 820 GGTGGACG-CACGCCATTGCATACGCCTGATGAGCTTAAAGAAATGGGTTTTCACTTGAT 878 Query 871 CGTTCACCCGCTTACCGCACTCTATGCATCGACTCGAGCTCTGGTTGATGTTCTCAAGAC 930 || ||||| |||||| | |||||||| |||||||||||||| || |||||||| |||| Sbjct 879 CGCACACCCACTTACCTCGCTCTATGCGTCGACTCGAGCTCTTGTCGATGTTCTTAAGAT 938 Query 931 TCTTAAAGA-AAACGGAAGCACTCGA-GATCACTT-GCAAAAGATGGCTA-CTTTTGAGG 986 ||| || || ||| |||| ||| | | || ||||| | |||||||| || |||| || | Sbjct 939 TCTCAAGGAGAAA-GGAACCAC-CAAAGACCACTTAG-AAAAGATGA-TAACTTTCGAAG 994 Query 987 AATTCAATAGTTTAGTGGATTTAGATTCATGGTTTGAGCTCGAAGCTC--GCTATTCAAA 1044 | || || |||| ||| | || |||||||||| |||||||||| | | | || || || Sbjct 995 AGTTTAACCGTTTGGTGAACTTGGATTCATGGTATGAGCTCGAAAC-CAAG-TACTCTAA 1052 Query 1045 CCTCAGGAACGCTCTTAGGACAA-CAAAATCATGAAGAT 1082 |||||| |||||||| ||| || |||||| |||| ||| Sbjct 1053 CCTCAGAAACGCTCT-AGGGGAAACAAAATAATGA-GAT 1089 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53965585875 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5