BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476868
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77060.1 | Symbols: | Phosphoenolpyruvate carboxylase famil... 1668 0.0
AT1G21440.1 | Symbols: | Phosphoenolpyruvate carboxylase famil... 787 0.0
> AT1G77060.1 | Symbols: | Phosphoenolpyruvate carboxylase family
protein | chr1:28951685-28953509 REVERSE LENGTH=1199
Length=1199
Score = 1668 bits (903), Expect = 0.0
Identities = 1038/1104 (94%), Gaps = 6/1104 (1%)
Strand=Plus/Plus
Query 1 GTGGGTCAGAGTCCAACTCGATTTAGAGAG-AGAACAAGACTTATTC-AAGCTTCGAACA 58
||||||||||||| ||||||| |||||||| |||| || |||| ||| | |||||||| |
Sbjct 3 GTGGGTCAGAGTCTAACTCGA-TTAGAGAGAAGAA-AAAACTTGTTCGAGGCTTCGAAGA 60
Query 59 ATGTCGATGTTAATGGCTGTGAAAACCACTTCGCTCTGTTGCAGCAGCTTAAACCTGACG 118
|||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| ||
Sbjct 61 ATGTCGATGTTAATGGCTGTCAAAACAACTTCACTCTGTTGTAGCAGCTTAAACCTTACA 120
Query 119 GCTTCACCAACATTCCGACGGAACCCACGAGCGGCGAGATTGATGAATCCGACGGCGAGA 178
||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 121 GCTTCACCAACATTCCGACGGAACCCACGCGCGGCGAGATTGGTGAATCCGACAGCGAGA 180
Query 179 ATCCAAACACGTATTCATCGTCTGATTGAAGAACAAGGCATTGTTCTCATGCCTGGATGC 238
|||||||||||| ||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 181 ATCCAAACACGTTTTCATCGCCTGATTGAAGAACAAGGCATTGTGCTTATGCCTGGATGC 240
Query 239 TACGACGCCTTATCGGCGGCTATTGTGCAGCAAACCGGATTCTCCGCTGGTTTTATATCC 298
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TACGATGCCTTATCCGCGGCTATTGTGCAGCAAACCGGATTCTCCGCTGGTTTTATATCC 300
Query 299 GGTTACGCCTTATCCGCTTCTCTTCTGGGAAAACCCGATTTCGGTTTGCTAACACCACCG 358
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 GGTTACGCCTTATCCGCTTCTCTCCTGGGAAAACCCGATTTCGGTTTGCTAACACCACCG 360
Query 359 GAGATGGCTGCGACGGCAAGGTCGGTGTGTGCGTCAGCTCCAAATATACCAATCATTGCA 418
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 361 GAGATGGCTGCGACGGCAAGGTCGGTGTGTGCGTCAGCTCCTAATATACCCATCATTGCA 420
Query 419 GATGCTGATACCGGTGGTGGAAATGCGCTTAACGTTCAAAGAACCGTAAAGGATTTGATT 478
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 421 GATGCTGATACCGGTGGAGGAAATGCGCTAAACATTCAAAGAACCGTAAAGGATTTGATT 480
Query 479 GCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAAGCATGGCCAAAGAAGTGTGGTCAT 538
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GCAGCTGGTGCTGCTGGTTGCTTCCTTGAGGACCAAGCATGGCCAAAGAAGTGTGGTCAT 540
Query 539 ATGCGTGGTAAACAGGTGATACCAGCTGAAGAGCATGCCACTAAAATAGCATCAGC-CAG 597
|||||||||||||||||||||||||| ||||| |||||| | |||||||||||||| | |
Sbjct 541 ATGCGTGGTAAACAGGTGATACCAGCAGAAGAACATGCCGCAAAAATAGCATCAGCTC-G 599
Query 598 AGACGCTATCGGAGACTCTGACTTCTTCCTTGTTGCAAGAACAGATGTGCGTGCTACTTC 657
||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 600 AGATGCTATTGGAGACTCTGACTTCTTCCTTGTCGCAAGAACAGACGTGCGTGCTACTTC 659
Query 658 TGCAAAATCAGGTCTTGAAGACGCCATTGCGCGTGTTAATCTCTACATGGAGGCGGGAGC 717
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 660 TGCAAAATCAGGGCTTGAAGACGCCATTGCACGTGTTAATCTATACATGGAGGCAGGAGC 719
Query 718 TGATGCATCATTTGTAGAGGCACCGAGAGACGACGATGAGCTCAAGGAAATTGGAAAACG 777
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 720 TGATGCTTCCTTTGTAGAGGCACCAAGAGACGACGATGAGCTCAAGGAAATTGGAAAACG 779
Query 778 CACAAAAGGTTATAGAGTTTGCAACATGATTGAAGGAGGAGTCACACCATTGCACACGCC 837
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 CACAAAAGGTTATAGAGTTTGCAACATGATTGAAGGAGGAGTCACACCATTACACACGCC 839
Query 838 TGTTGAGCTTAAAGAAATGGGGTTTCACTTGATCGTTCACCCGCTTACCGCACTCTATGC 897
|| |||||||||||||||||| || |||||||| |||||||| |||||||||||||||||
Sbjct 840 TGATGAGCTTAAAGAAATGGGATTCCACTTGATAGTTCACCCCCTTACCGCACTCTATGC 899
Query 898 ATCGACTCGAGCTCTGGTTGATGTTCTCAAGACTCTTAAAGAAAACGGAAGCACTCGAGA 957
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 900 ATCGACTCGAGCTCTGGTCGATGTTCTCAAGACTCTTAAAGAAAACGGTAGCACTCGAGA 959
Query 958 TCACTTGCAAAAGATGGCTACTTTTGAGGAATTCAATAGTTTAGTGGATTTAGATTCATG 1017
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 960 TCACTTGCAAAAGATGGCTACTTTTGAGGAATTCAATAGTTTGGTGGATTTAGATTCGTG 1019
Query 1018 GTTTGAGCTCGAAGCTCGCTATTCAAACCTCAGGAACGCTCTTAGGACAACAAAATCATG 1077
||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 1020 GTTTGAGCTTGAAGCTCGCTATTCAAACCTCAGAAACGCTCTTGGGACAACCAAATCATG 1079
Query 1078 AAGATAGACACAACtttttttttt 1101
||||||| ||| ||||||||||
Sbjct 1080 AAGATAGGGACATTTTTTTTTTTT 1103
> AT1G21440.1 | Symbols: | Phosphoenolpyruvate carboxylase family
protein | chr1:7502159-7504175 REVERSE LENGTH=1249
Length=1249
Score = 787 bits (426), Expect = 0.0
Identities = 856/1059 (81%), Gaps = 47/1059 (4%)
Strand=Plus/Plus
Query 44 TTCA-AGCTTCGAACAATGTCGATGTTAATGGCTGTGAAAACCACTTCGCTCTGTTGCAG 102
|||| ||||||| | |||||||||||||||||| | ||| ||||||| |||| ||
Sbjct 58 TTCAGAGCTTCG-AGAATGTCGATGTTAATGGCGGCCAAATCCACTTCACTCT-TT---- 111
Query 103 CAGCTTAAA-CCTGACGGCTTCA-CCAACATTCCGACGGAACCCACGAGCGGCG--AGAT 158
|||| ||| ||| || |||| | || | | | | ||||| | |||||| ||||
Sbjct 112 -AGCTCAAACCCT-ACAATTTCAGCTAA-AATAGGGCAAAACCCTC--GCGGCGTCAGAT 166
Query 159 TGATGAATCCGACGGCGAGAATCCAAACACGTATTCATCGTCTGATTGAAGAACAAGGCA 218
| | ||||||||| |||||| || ||||| |||| |||||||||||||| |||||
Sbjct 167 CGGTTTATCCGACGGTGAGAATGCAGTCACGTGTTCACCGTCTGATTGAAGAGCAAGGTG 226
Query 219 TTGTTCTCATGCCTGGATG-CTACGACGCCTTATCGGCGGCTATTGTGCAGCAAACCGGA 277
||| || || || ||| | ||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 227 CTGTGCTTATTCCCGGA-GTCTACGACGCATTATCTGCGGCTATTGTGCAGCAGACCGGA 285
Query 278 TTCTCCGCTGGTTTTATATCCGGTTACGCCTTATCCG-CTTCTCTTCTGGGAAAACCCGA 336
|||||||| | || || |||||||||||| | |||| | | ||| |||||||||| ||
Sbjct 286 TTCTCCGCCGCATTAATCTCCGGTTACGCCCTCTCCGCCGTAACTT-TGGGAAAACCAGA 344
Query 337 TTTCGGTTTGCTAACACCACCGGAGATGGCTGCGACGGCAAGGTCGGTGTGTGCGT-CAG 395
|||||||||| ||||||| ||||||||||| || ||||| || || |||||||| | | |
Sbjct 345 TTTCGGTTTGATAACACCTCCGGAGATGGCAGCAACGGCGAGATCAGTGTGTGC-TGCGG 403
Query 396 CTCCAAATATACCAATCATTGCAGATGCTGATACCGGTGGTGGAAATGCGCTTAACGTTC 455
||||||| || ||||||||||||||||| ||||| ||||| |||||||| || || ||||
Sbjct 404 CTCCAAAGATTCCAATCATTGCAGATGCAGATACTGGTGGAGGAAATGCTCTCAATGTTC 463
Query 456 AAAGAACCGTAAAGGATTTGATTGCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAAG 515
|||||||||| ||||| || || ||||||||||||||||||||||||||||||||||| |
Sbjct 464 AAAGAACCGTCAAGGACTTAATCGCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAGG 523
Query 516 CATGGCCAAAGAAGTGTGGTCATATGCGTGGTAAACAGGTGATACCAGCTGAAGAGCATG 575
|||||||||||| |||||| ||||||||||| ||| |||| ||||| || || || || |
Sbjct 524 CATGGCCAAAGAGGTGTGGACATATGCGTGGCAAAGAGGTCATACCTGCGGAGGAACACG 583
Query 576 CCACTAAAATAGCATCAGCCAGAGACGCTATCGGAGACT-CTGACTTCTTCCTTGTTGCA 634
| |||||||||||||||| ||||||||||| ||||| | ||||||| || || | ||
Sbjct 584 CTGCTAAAATAGCATCAGCAAGAGACGCTATTGGAGA-TGCTGACTTTTTTCTAATCGCT 642
Query 635 AGAACAGATG-TGCGTGCTACTT-CTGCAAAATCAGGTCTTGAAGACGCCATTG-CGCGT 691
|| || |||| | ||||| |||| | |||||| |||| ||| ||||||||||| | |||
Sbjct 643 AGGACTGATGCT-CGTGC-ACTTTCCGCAAAAACAGGACTTTCAGACGCCATTGAC-CGT 699
Query 692 GTTAATCTCTACATGGAGGCGGGAGCTGATGCATCATTTGTAGAGGCACCGAGAGACGAC 751
| |||||| || |||||||| ||||||||||| || ||||| ||||||||||| |||||
Sbjct 700 GCTAATCTTTATATGGAGGCAGGAGCTGATGCTTCCTTTGTTGAGGCACCGAGGGACGAT 759
Query 752 GATGAGCTCAAGGAAATTGGAAAACGCACAAAAGGTTATAGAGTTTGCAACATGATTGAA 811
|| ||||| |||||||| |||| |||||||||||||| ||| | || |||||| |||||
Sbjct 760 GACGAGCTTAAGGAAATCGGAAGGCGCACAAAAGGTTACAGACTGTGTAACATGCTTGAA 819
Query 812 GGAGGA-GTCACACCATTGCACACGCCTGTTGAGCTTAAAGAAATGGGGTTTCACTTGAT 870
|| ||| | ||| |||||||| ||||||| |||||||||||||||||| |||||||||||
Sbjct 820 GGTGGACG-CACGCCATTGCATACGCCTGATGAGCTTAAAGAAATGGGTTTTCACTTGAT 878
Query 871 CGTTCACCCGCTTACCGCACTCTATGCATCGACTCGAGCTCTGGTTGATGTTCTCAAGAC 930
|| ||||| |||||| | |||||||| |||||||||||||| || |||||||| ||||
Sbjct 879 CGCACACCCACTTACCTCGCTCTATGCGTCGACTCGAGCTCTTGTCGATGTTCTTAAGAT 938
Query 931 TCTTAAAGA-AAACGGAAGCACTCGA-GATCACTT-GCAAAAGATGGCTA-CTTTTGAGG 986
||| || || ||| |||| ||| | | || ||||| | |||||||| || |||| || |
Sbjct 939 TCTCAAGGAGAAA-GGAACCAC-CAAAGACCACTTAG-AAAAGATGA-TAACTTTCGAAG 994
Query 987 AATTCAATAGTTTAGTGGATTTAGATTCATGGTTTGAGCTCGAAGCTC--GCTATTCAAA 1044
| || || |||| ||| | || |||||||||| |||||||||| | | | || || ||
Sbjct 995 AGTTTAACCGTTTGGTGAACTTGGATTCATGGTATGAGCTCGAAAC-CAAG-TACTCTAA 1052
Query 1045 CCTCAGGAACGCTCTTAGGACAA-CAAAATCATGAAGAT 1082
|||||| |||||||| ||| || |||||| |||| |||
Sbjct 1053 CCTCAGAAACGCTCT-AGGGGAAACAAAATAATGA-GAT 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5