BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476875
Length=1036
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77122.1 | Symbols: | Uncharacterised protein family UPF009... 1539 0.0
> AT1G77122.1 | Symbols: | Uncharacterised protein family UPF0090
| chr1:28977357-28978743 REVERSE LENGTH=1111
Length=1111
Score = 1539 bits (833), Expect = 0.0
Identities = 983/1053 (93%), Gaps = 19/1053 (2%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTTC-TCACTTGCCGGAGAAGATGGATTTGTTTATT-TGTTTCCGACCGAAT 58
|||||||| ||| ||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 42 TCTTCTTC-TTCTTCACTTGCCGGAGAAGATGGATTTG-TTGTTCTGTTTCCGACCGAAT 99
Query 59 CAGTCTTGTCGCGGAATTTCAGTTTTGCCTGCTTTTAGCATAAGCAATGTTTTCGCTGTC 118
||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||| |||
Sbjct 100 CAGACTTGTCGGGGAATTTCAGTTTTGCCTGCTTTTAGCATAAGCAATCTTTCCGCCGTC 159
Query 119 AATCGTTTCCGTTCGACGACGAGTCTTCGTTTTGGATTTCCGGCGACGCCGTTTCGTCGG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 AATCGTTTCCGTTCGACGACGAGTCTTCGTTTTGGATTTCCGGCGACGCCGTTTCGTCGG 219
Query 179 ACTCCAAACTTTACCTTCAATACTCACGCGAAGAAGAAGAATAAAACGAGTACTGTCGAA 238
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 220 ACTCCAAACTTTACCTTCAAAACTCACGCGAAGAGGAAGAATAAAACGAGTACTTTCGAA 279
Query 239 CAGAGACCGAACAAAGTCGAAGAATTGATC-TT--------Tgaagaagaagaagaagaa 289
| || |||||| ||||||||||| |||||| || ||||||||||||||||||
Sbjct 280 CCGAAACCGAATAAAGTCGAAGAGTTGATCATTGAAGAAGAAGAAGAAGAAGAAGAAGAA 339
Query 290 gaGGAGCTACTTCTTCCCGAAGAGATTCAAGACAATCAAGACGAGTTGCTACTGGATGAT 349
|||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 340 GAGGAGATAGTTCTTCCCGAAGAGATTCAAGAGAATCAAGACGAGTTGCTACTGGATGAT 399
Query 350 G-A-AT-AC---GACGAAGACGATGACTTTGAGTTCGATGAGAGCGAGGAGGAACTTTAT 403
| | || || ||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 400 GAATATGACGAAGACGATGACGATGACTTTGAGTTCGATGAGAGCGAGGAGGAGCTCTAT 459
Query 404 GCTGGAGATGGAGGTGGTGGAGGAGGCATTAAACTTGCTGGAACATTATGGGATAAAGAA 463
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 460 GCTGGAGATGGTGGTGGTGGAGGAGGCATCAAACTTGCTGGAACATTATGGGACAAAGTA 519
Query 464 GCATTGGCATTAGCTGAGAAAGTCTGTGAGTCTTTTGATGGTGATTTAGGCATTTATGCC 523
||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 520 GCATTAGCATTAGCTGTGAAAGTTTGTGAGTCTTTTGATGGTGATTTAGGCATTTATGCC 579
Query 524 TTCAAGACACTGCCTAATTCAACCATACAAGTGCGAATCGAGCGGCTCACTAACAAGTTT 583
|||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 580 TTCAAGACTCTGCCAAATTCAACCATACAAGTGAGAATCGAGCGGCTCACTAACAAGTTT 639
Query 584 GGTTCTCCAACAATGGAAGACATTGAAGCATTTTCAACAATCTATAGAGCAAAATTGGCT 643
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 640 GGTTCACCAACAATGGAAGACATTGAAGCATTTTCAACAATCTACCGAGCAAAATTGGCT 699
Query 644 GAAGCTGAACTCGCCAAGTCTATACCGGACAATATCTCTCTAGAGGTTTCATCTCCTGGT 703
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 700 GAAGCAGAACTCGCCAAGTCAATACCGGACAATATCTCTCTAGAGGTTTCATCTCCTGGT 759
Query 704 GTTGAAAGGGTAGTACGAATTCCGCAGGATCTTGATCGGTACAAGGACAGACCGATGTAC 763
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 760 GTCGAAAGGGTAGTACGAATTCCGCAGGATCTTGATCGGTATAAGGATAGACCGATGTAC 819
Query 764 GTGAGGTACACTAACGAGGACACTGAGACCGAAGGTGATGGTATTTTCAGGCTGATTTCT 823
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 820 GTGAGGTACACTAACGAGGACACTGAGACCGAAGGTGATGGTATTTTCAGGCTGGTTTCT 879
Query 824 TTCGATGTGGAAGCCAAAAGCTGCATTTGGGGAATAGCAGACATAAGAGTAAACCGAGAA 883
|||||||||||||| |||| |||||||||||| |||||||| ||||||||||||||||||
Sbjct 880 TTCGATGTGGAAGCTAAAATCTGCATTTGGGGCATAGCAGATATAAGAGTAAACCGAGAA 939
Query 884 AAGGCCGGCAAAGGAAGACCTTTGAGCAAGAAGCAAAGAGAATGGCGACTCGAAACGGCT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AAGGCCGGCAAAGGAAGACCTTTGAGCAAGAAGCAAAGAGAATGGCGACTCGAAACGGCT 999
Query 944 TTCGAGTCACTGCGGTTAGTCCGCTTGCACTCTGAATGTTGAGAACACAATAAAAAGGAA 1003
||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||||| ||||
Sbjct 1000 TTCGAGTCACTACGGTTAGTCCGTTTGCATTCTGAATGTTGAGAACACAGTAAAATGGAA 1059
Query 1004 TGTCTTTTACTTTATATTAAAATCTCAATAGAA 1036
||| ||||| |||||||| ||||||||||||||
Sbjct 1060 TGTGTTTTAGTTTATATTCAAATCTCAATAGAA 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50786722617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5