BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476877
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77140.1 | Symbols: VPS45, ATVPS45 | vacuolar protein sortin... 3083 0.0
> AT1G77140.1 | Symbols: VPS45, ATVPS45 | vacuolar protein sorting
45 | chr1:28984025-28987983 FORWARD LENGTH=2150
Length=2150
Score = 3083 bits (1669), Expect = 0.0
Identities = 1854/1940 (96%), Gaps = 25/1940 (1%)
Strand=Plus/Plus
Query 1 GAATTTTACGGCGGAACGATGGTTTTGGTTACGTCTGTGCGTGATTACATCAACCGGATG 60
||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GAATTTTGCGGTGAAACGATGGTTTTGGTTACGTCTGTGCGTGATTACATTAACCGGATG 180
Query 61 CTTCAGGATATCTCCGGCATGAAGGTTCTCATACTCGACTCCGAAACGGTTAGCAATGTA 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTCAGGACATCTCCGGCATGAAGGTTCTCATACTCGACTCCGAAACGGTTAGCAATGTA 240
Query 121 AGCATTGTGTATTCACAGTCAGAGCTGCTTCAGAAAGAAGTTTTTCTTGTGGAGATGATA 180
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 241 AGCATTGTGTATTCACAGTCAGAGCTGCTTCAGAAAGAAGTGTTTCTGGTGGAGATGATA 300
Query 181 GATTCAATCTCTGTGTCAAAAGAATCGATGTCGCATCTGAAAGCTGTTTATTTCATCCGT 240
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 GATTCAATATCTGTGTCAAAAGAATCGATGTCACATCTGAAAGCTGTTTATTTCATCCGT 360
Query 241 CCAACTTCAGAGAATATTCAGAAACTACGTTACCAGCTTGCCAATCCTAGATTTGGAGAG 300
||||||||||| |||||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 361 CCAACTTCAGATAATATTCAGAAATTACGATACCAGCTTGCGAATCCTAGATTTGGAGAA 420
Query 301 TACCATTTATTTTTCTCCAATCTGTTAAAGGATACTCAGATTCATATTTTGGCTGATTCC 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 TACCATTTATTTTTCTCCAATCTGTTGAAGGATACTCAGATTCATATTTTGGCTGATTCC 480
Query 361 GACGAGCATGAGGTTGTACAGCAAGTTCAGGAGTATTATGCAGACTTTGTTGCTGGTGAT 420
|| ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 GATGAGCAGGAAGTTGTACAGCAAGTTCAGGAGTATTATGCAGACTTTGTTTCTGGTGAT 540
Query 421 CCATATCATTTCACATTGAATATGGCATCAAACCACCTTTATATGATCCCAGCAGTTGTC 480
|||||||||||||||||||||||||||||||| || || ||||||||||| |||||||||
Sbjct 541 CCATATCATTTCACATTGAATATGGCATCAAATCATCTATATATGATCCCCGCAGTTGTC 600
Query 481 GATCCCTCTGGTTTGCAACGCTTCTCCGATCGGGTTGTTGATGGAATTGCGGCAGTGTTT 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 GATCCCTCTGGTTTGCAACGCTTTTCCGATCGGGTTGTTGATGGAATTGCGGCAGTGTTT 660
Query 541 CTGGCGTTGAAACGGAGACCTGTCATCAGATATCAGAGGACTTCTGATACTGCGAAAAGG 600
|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 661 CTGGCGTTGAAACGAAGACCTGTCATCAGATATCAGAGGACCTCTGATACTGCAAAAAGG 720
Query 601 ATTGCACAGGAAACAGCTAAATTGATGTATCAGCATGAAAGCGCTCTTTTTGACTTTAGA 660
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATTGCACACGAAACAGCTAAATTGATGTATCAGCATGAAAGCGCTCTTTTTGACTTTAGA 780
Query 661 CGGACTGAAAGCTCTCCGTTGCTACTTGTAATTGACAGAAGAGATGACCCGGTTACCCCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGGACTGAAAGCTCTCCGTTGCTACTTGTAATTGACAGAAGAGATGACCCGGTTACCCCA 840
Query 721 TTGCTGAATCAGTGGACATATCAGGCAATGGTGCACGAACTCATAGGACTTCAAGATAAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTGCTGAATCAGTGGACATATCAGGCAATGGTGCACGAACTCATAGGACTTCAAGATAAT 900
Query 781 AAAGTGGACTTGAAATCCATTGGAAGTCTTCCAAAAGATCAGCAAGTGGAGGTGGTTTTA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAAGTGGACTTGAAATCCATTGGAAGTCTTCCAAAAGATCAGCAAGTGGAGGTGGTTTTA 960
Query 841 TCATCAGAACAAGATGCATTTTTCAAATCTAACATGTATGAAAATTTTGGGGATATTGGA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCATCAGAACAAGATGCATTTTTCAAATCTAACATGTATGAAAATTTTGGGGATATTGGA 1020
Query 901 ATGAACATCAAGCGAATGGTAGATGACTTTCAGCAGGTGGCCAAGAGTAACCAAAATATC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATGAACATCAAGCGAATGGTAGATGACTTTCAGCAGGTGGCCAAGAGTAACCAAAATATC 1080
Query 961 CAGACAGTAGAGGATATGGCCAGATTTGTTGACAACTACCCTGAGTACAAAAAGATGCAA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CAGACAGTAGAGGATATGGCCAGATTTGTTGACAACTACCCTGAGTACAAAAAGATGCAA 1140
Query 1021 GGCAACGTTTCAAAGCATGTAACTCTGGTTACTGAAATGAGCAAGCTAGTTGAAGCAAGG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGCAACGTTTCAAAGCATGTAACTCTGGTTACTGAAATGAGCAAGCTAGTTGAAGCAAGG 1200
Query 1081 AAACTGATG-CTGGTTTCACAAACAGAGCAGGACTTGGCTTGCAATGGTGGCCAAGGAGC 1139
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAACTGATGAC-GGTTTCACAAACAGAGCAGGACTTGGCTTGCAATGGTGGCCAAGGAGC 1259
Query 1140 TGCATATGAGGCAGTTATGGATCTCTTAAATAATGAAAGTGTTTCTGACATCGACCGGCT 1199
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1260 TGCATATGAGGCAGTTACGGATCTCTTAAATAATGAAAGTGTGTCTGACATCGACCGGCT 1319
Query 1200 GCGTTTGGTAATGCTATATGCTTTGCGCTATGAGAAAGAAAACCCCGTTCAGTTGATGCA 1259
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1320 GCGTTTGGTAATGCTATATGCTTTGCGCTATGAGAAAGAAAATCCTGTTCAGTTGATGCA 1379
Query 1260 ACTGTTCAACAAATTGGCTTCACGGTCTCCCAAGTACAAACCAGGGTTAGTTCAGTTTCT 1319
| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1380 ATTGTTCAACAAATTGGCTTCACGGTCTCCCAAGTACAAACCAGGGCTAGTTCAATTTCT 1439
Query 1320 CTTGAAACAAGCCGGTGTGGAGAAGCGTACTGGGGATCTATTTGGAAACAGAGATCTTTT 1379
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1440 CTTGAAACAAGCCGGTGTGGAGAAGCGCACTGGTGATCTATTTGGAAACAGAGATCTTTT 1499
Query 1380 GAATATAGCACGAAACATGGCTCGTGGACTTAAGGGGGTTGAGAATGTGTACACTCAACA 1439
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1500 GAATATAGCACGTAACATGGCTCGTGGACTTAAGGGTGTTGAGAATGTCTACACTCAACA 1559
Query 1440 TCAGCCTCTTCTGTTTCAAACAATGGAGAGCATAACCAGAGGGAGATTACGAGATGTGGA 1499
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1560 TCAGCCTCTTCTGTTTCAAACAATGGAGAGCATAACTAGAGGGAGATTACGAGATGTGGA 1619
Query 1500 CTACCCATTTGTTGGAGATCATTTTCAACAGGGACGGCCACAAGAGGTGGTTATTTTTAT 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TTACCCATTTGTTGGAGATCATTTTCAACAGGGACGGCCACAAGAGGTGGTTATTTTTAT 1679
Query 1560 GGTTGGTGGAACAACATACGAGGAATCACGCTCTGTTGCTCTACAGAATGCCACCAACTC 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 GGTTGGTGGAACAACATACGAGGAATCACGCTCTGTTGCTCTACAGAATGCCACCAACTC 1739
Query 1620 CGGGATTCGGTTTATTCTCGGCGGCACCGCAGTGCTTAATTCCAAGAGATTTCTAAAGGA 1679
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 CGGGGTTCGGTTTATTCTCGGCGGCACCGCAGTGCTTAATTCCAAGAGATTTCTAAAGGA 1799
Query 1680 CTTGGAAGAAGCACAAAGGATATCAAGATCAGGTAGCCATATGGTGTGAAT--G-T--AA 1734
|||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1800 CTTGGAAGAAGCACAAAGGATATCAAGATCAGGTAGCCATATGGTGTGAAGAAGATCCAA 1859
Query 1735 ATTA-TTAAGTCTTAAG-ATTCTTCC-GTATGAA-AT------GGAGAGCA--TAGAAGA 1782
| | || || | || ||| || || | || || || ||||| |||||||
Sbjct 1860 AAGAATTTTGTGTAAATTATTTTTTAAGTCTTAAGATTCTTCCGGGGAGCACATAGAAGA 1919
Query 1783 AAGAGACAAATGAAAGAAAGAAGATTGTGGTCAGGTTTATCGAATCTTTCGTATACAT-- 1840
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1920 AAGAGACAAATGAAAGAA-GAAGATTGTGGTCAGGTTCGTCGAATCTTTCGTATACATGA 1978
Query 1841 TGATGATTACCCCCACTAGAGAGATGTAATTTTTGGGGTTTGTGTGTGTATTCATCGTGG 1900
||||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1979 TGATGATTACCCC-ACCAGAGAT-T-TAATTTTTGGGGTTTGTGTGTGTATTCATCGTGG 2035
Query 1901 TACAGTTTAATTGGACCGTT 1920
||||||||||||||||||||
Sbjct 2036 TACAGTTTAATTGGACCGTT 2055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97087854030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5