BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476879
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77145.1 | Symbols: | Protein of unknown function (DUF506) ... 1195 0.0
AT1G77160.1 | Symbols: | Protein of unknown function (DUF506) ... 1062 0.0
> AT1G77145.1 | Symbols: | Protein of unknown function (DUF506)
| chr1:28989927-28991346 REVERSE LENGTH=1090
Length=1090
Score = 1195 bits (647), Expect = 0.0
Identities = 782/847 (92%), Gaps = 10/847 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaCCTAGAAGAATAGGAAGAG--ACAGGTGAGAGAATA-TTTGAGATGGG 57
||||||||||||||||||||||||||||||| |||||||| |||| | |||||||||||
Sbjct 2 AAAAAAAAAAAACCTAGAAGAATAGGAAGAGACACAGGTGAAAGAACATTTTGAGATGGG 61
Query 58 AAGCTTGGGAGAAGAAGATTTAGAGAAGCTTGTGCTTGATTATATTGAATCATCTCCGAT 117
|||||||||||||||||||||||||||||||||||| |||||||| | | ||||||||
Sbjct 62 AAGCTTGGGAGAAGAAGATTTAGAGAAGCTTGTGCTCGATTATATCG-A--GTCTCCGAT 118
Query 118 CACTGTCTCCGATCATCTTGAGACTTCTCCAACGGTTCTTATCACTCTTGAGGAGATTCT 177
||| |||||| | ||| |||||| |||| |||||| ||||||||||||| ||||||||||
Sbjct 119 CACCGTCTCCCAGCATATTGAGAGTTCTACAACGGCTCTTATCACTCTTAAGGAGATTCT 178
Query 178 TAGGGCAAAAGGAGAAGAAGAGAAGGAGATGGAAGACAAGATAAAGTCGTTTATGAA-GA 236
|||||||||||||||| ||||||||||||||||||| |||||| ||||||||| || |
Sbjct 179 TAGGGCAAAAGGAGAAAAAGAGAAGGAGATGGAAGAGAAGATATGGTCGTTTATCAATG- 237
Query 237 GAGGAAGGTTATCATATGAAGGAGACGATGAGAAGAGAGATGTGATGAACAAAATTGTCT 296
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 238 GAGGAAGGTTATCATATGAAGGAGACGATGAGAAGAGAGATGTGATGAACAAGATTGTCT 297
Query 297 CTAAACTCAGATCTGATGGCTACGATGCTTCTGTCTCCAAAACCTCATGGGACTCTTCTT 356
|||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 298 CTAAACTCAGATCTGAAGGCTATGATGCTTCTCTCTCCAAAACCTCATGGGACTCTTCTT 357
Query 357 TTGATCTTAGTGAAGGGTGTAGAGTGTTTAGGTGCTCGAGGAAGTACGAGTACATTGACG 416
|||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 358 TTGATCATCGTGAAGGGTGTAGAGTGTTTAGGTGCTCGAGGAAGTATGAGTACATTGACG 417
Query 417 TCATGGTCAAGGGTGGTCGCGACGGTGATGGCGTAAGCAAGCTGAAACGTGTGATAATTG 476
||||||| ||||||| | || || ||||||||||||||||||||||||||||||||||||
Sbjct 418 TCATGGTGAAGGGTGATAGCAACCGTGATGGCGTAAGCAAGCTGAAACGTGTGATAATTG 477
Query 477 ATCTTGACTTCAAATCTCAGTTTGAGCTAGCCAGACAGACACAAGCTTACAAAGACATAA 536
|||||||||||||| |||||||||||||||| ||||||||| ||||||||||||| || |
Sbjct 478 ATCTTGACTTCAAAACTCAGTTTGAGCTAGCGAGACAGACAGAAGCTTACAAAGATATGA 537
Query 537 CTGAGATGCTTCCGAG-AGTGTTCGTGGCGACAGAGGGGAGACTAAGAAGAGTTGTTTCG 595
||||||||||||| | |||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 538 CTGAGATGCTTCC-ATTAGTGTTTGTGGCGACAGAAGGGAGACTGAGAAGAGTTGTTTCG 596
Query 596 TTGGTTTGTGGTGAGATGAAAAAGTCGATGGAGAAAGAAGGAATGTCTAGACCACCATGG 655
|||||||||||||||||||||||||| ||| ||||||||||||||||||| || ||||||
Sbjct 597 TTGGTTTGTGGTGAGATGAAAAAGTCCATGAAGAAAGAAGGAATGTCTAGGCCTCCATGG 656
Query 656 AGGACTTCAAGATACATGCAGTCCAAGTGGCTACCTGAGAATCGTCGAAGAGTCTCTGGT 715
|||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 657 AGGACTACGAGATACATGCAGTCCAAGTGGCTACCAGAGAATCGTCGAAGAGTCTCCGGT 716
Query 716 TGCAAGAAAGGGTCTTGGTCTTGGTCTGTGTTTGATGATGGTGGTGAAGGAAAAGGTCAA 775
|| |||||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 717 TGTAAGAAAGGTTCTTGGTCTTGGTCTGTGTTTGATGATGGTAGTGAAGGAAGAGGTGAA 776
Query 776 GCTAGGAGTTGGACAGTGAGTGGTGGTGGTCCGAAAACTAAGTGTTGTTTTCCTATTTTC 835
||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 777 GCTAGGACTTGGACAGTAAGTGGTAGTGGTCCGAAAACTAAGTGTTGTTTTCCTATTTTC 836
Query 836 TGAGAGG 842
|||||||
Sbjct 837 TGAGAGG 843
Score = 196 bits (106), Expect = 3e-49
Identities = 136/149 (91%), Gaps = 8/149 (5%)
Strand=Plus/Plus
Query 862 TTGTTTGTTGCTTCTTATGATTATTCCTTTTTTGGGTGGTGTTCTTGAAATTTTTGAATT 921
|||||| || ||| |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 922 TTGTTT-TT--TTCGTATGATTATTCC-TTTTTGGG-GGTGTTCTTGAAATTTTTGAATT 976
Query 922 GC-CaaaaaaaaTGTGGGGCTTG-T-TGTCAAGtttttttCTGATGCTATCTATATTGCA 978
|| ||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 977 GCTTAAAAAAAATGTTGGGCTTGTTGTGTCAGGTTTTTTTCTGATGCTATCTATATTGCA 1036
Query 979 TCTTCTACTTGTATCAACAGCCGATGGAT 1007
||||||||||||||||| |||||||||||
Sbjct 1037 TCTTCTACTTGTATCAATAGCCGATGGAT 1065
> AT1G77160.1 | Symbols: | Protein of unknown function (DUF506)
| chr1:28995146-28996594 REVERSE LENGTH=1105
Length=1105
Score = 1062 bits (575), Expect = 0.0
Identities = 769/859 (90%), Gaps = 28/859 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaaaCCTAGAAGAATAGGAAGAGACAGGTGAGAGAATATTTGAGATGGGAAG 60
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 20 AAAAAAAAAAAACCTAGAAGAATAGGAAGAGACAGGTGAAAGAACGTTTGAGATGGGAAG 79
Query 61 CTTGGGAGAAGAAGATTTAGAGAAGCTTGTGCTTGATTATATTGAATCATCTCCGATCAC 120
|||||||||||||||||| |||||||||||||| | |||||| | | |||||||| ||
Sbjct 80 CTTGGGAGAAGAAGATTTCGAGAAGCTTGTGCTCGGTTATATCG-A--GTCTCCGATGAC 136
Query 121 TGTCTC-CGATCATCTTGAGACTTCTCCAACGGTTCTTATCACTCTT---G--------- 167
||||| | | ||| | | |||||| ||| || ||||||||||||| |
Sbjct 137 CGTCTCTC-AGCATATCAACACTTCTTCAAAGGCTCTTATCACTCTTCAGGAAATATTTT 195
Query 168 ---AGGAGATTCTTAGGGCAAAAGGAGAAGAAGAGAAGGAGATGGAAGACAAGATAAAGT 224
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 196 TACAGGAGATTCTTAGGGCAAAAGGAGTAGAAGAGAAGGAGATGGAAGAGAAGATAAGGT 255
Query 225 CGTTTATGAAGAGAGGAAGGTTATCATATGAAGGAGACGATGAGAAGAGAGATGTGATGA 284
||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 CGTATATCAATAGAGGAAGGTTATCATATGAAGGAGACGATGAGAAGAGAGATGTGATGA 315
Query 285 ACAAAATTGTCTCTAAACTCAGATCTGATGGCTACGATGCTTCTGTCTCCAAAACCTCAT 344
|||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 316 ACAAGATTGTCTCTAAACTCAGATCTGAGGGCTATAATGCTTCTCTCTCCAAAACCTCAT 375
Query 345 GGGACTCTTCTTTTGATCTTAGTGAAGGGTGTAGAGTGTTTAGGTGCTCGAGGAAGTACG 404
|||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||
Sbjct 376 GGGACTCTTCTTTTGATCATCGTGAAGGGTGTAGAGTGTTTACGTGCTCGAGGAAGTACG 435
Query 405 AGTACATTGACGTCATGGTCAAGGGTGGTCGCGACGGTGATGGCGTAAGCAAGCTGAAAC 464
||||||| |||| |||||| | |||| | ||||| ||||||||||||||||||||||||
Sbjct 436 AGTACATAGACGCCATGGTGATCGGTGATAGCGACCGTGATGGCGTAAGCAAGCTGAAAC 495
Query 465 GTGTGATAATTGATCTTGACTTCAAATCTCAGTTTGAGCTAGCCAGACAGACACAAGCTT 524
|||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||
Sbjct 496 GTGTGATAATTGATCTTGACTTCAAAACTCAGTTTGAGCTAGCGAGACAGACAGAAGCTT 555
Query 525 ACAAAGACATAACTGAGATGCTTCCGAGAGTGTTCGTGGCGACAGAGGGGAGACTAAGAA 584
||||||| || |||||||||||||||| |||||| ||||||||||| |||||||| ||||
Sbjct 556 ACAAAGATATGACTGAGATGCTTCCGACAGTGTTTGTGGCGACAGAAGGGAGACTGAGAA 615
Query 585 GAGTTGTTTCGTTGGTTTGTGGTGAGATGAAAAAGTCGATGGAGAAAGAAGGAATGTCTA 644
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 616 GAGTTGTTTCGTTGGTTTGTGGTGAGATGAAAAAGTCCATGAAGAAAGAAGGAATGTCTA 675
Query 645 GACCACCATGGAGGACTTCAAGATACATGCAGTCCAAGTGGCTACCTGAGAATCGTCGAA 704
| || |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||
Sbjct 676 GGCCTCCATGGAGGACTTCGAGATACATGCAGTCCAAGTGGCTACCAGAGAATTGTCGAA 735
Query 705 GAG-TCTCTGGTTGCAAGAAAGGGTCTTGGTCTTGGTCTGTGTTTGATGATGGTGGTGAA 763
||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GAGATG-CTGGTTGTAAGAAAGGGTCTTGGTCTTGGTCTGTGTTTGATGATGGTGGTGAA 794
Query 764 GGAAAAGGTCAAGCTAGGAGTTGGACAGTGAGTGGTGGTGGTCCGAAAACTAAGTGTTGT 823
|||| |||| |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 795 GGAATAGGTGAAGCTAGGTCTTGGACAGTGAGTGGT------CCGAAAACTAAGTGTTGT 848
Query 824 TTTCCTATTTTCTGAGAGG 842
|||||||||||||||||||
Sbjct 849 TTTCCTATTTTCTGAGAGG 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49329932354
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5