BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476881
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1975 0.0
AT1G77150.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 215 1e-54
> AT1G77170.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:28998047-28999537 REVERSE LENGTH=1491
Length=1491
Score = 1975 bits (1069), Expect = 0.0
Identities = 1299/1410 (92%), Gaps = 15/1410 (1%)
Strand=Plus/Plus
Query 1 ATGTTCTTCTCTGGTCTCATCTCCAAG---C---TTCATGGTACTAAAAGGACAAATCAC 54
||||||||||||||||| ||||||||| | ||||||||||||| || |||||||||
Sbjct 2 ATGTTCTTCTCTGGTCTTATCTCCAAGCTTCATGTTCATGGTACTAAGAGAACAAATCAC 61
Query 55 TTAAAGATCTTTCACCGTTTGAATCATTTCGTCACTATCTCATCATCTTCGTCGATTACG 114
|| | |||||||||||||||||||||||||||||||| |||||||||| ||| |||||
Sbjct 62 TTCACGATCTTTCACCGTTTGAATCATTTCGTCACTA---CATCATCTTCCTCGGTTACG 118
Query 115 TCTCTTTCGCCCCAAGATCGAAACAAGCTCTTAGCTACTCTGTTATCTAATTGTACCAGC 174
|||||||||| |||||||||||||| |||||||||||||||||||| || || || |||
Sbjct 119 CCTCTTTCGCCTCAAGATCGAAACAAACTCTTAGCTACTCTGTTATCAAACTGCACTAGC 178
Query 175 CTCGCTCGTGTCCGTCGTATCCATGGTGATATCTTCCGTTCATGCATCCTCGATCAATAT 234
|| |||||||| ||||| ||||||||||| |||||||||||| | |||||||||||||||
Sbjct 179 CTAGCTCGTGTTCGTCGGATCCATGGTGACATCTTCCGTTCACGAATCCTCGATCAATAT 238
Query 235 CCAATCGCTTTCTTATGGAACAACATCATGCGATCTTACATTCGCCATGATTCTCCTCTC 294
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 239 CCGATCGCTTTCTTATGGAACAACATCATGCGATCTTACATTCGCCATGAGTCTCCTCTC 298
Query 295 GATTCAGTTCAAGTGTATCTCGGTATGGTGAGATCAAATGTTTTGCCCGATCGATATACT 354
||| || ||||||| |||||||||||||||||||| | |||||| |||||||||||| ||
Sbjct 299 GATGCAATTCAAGTATATCTCGGTATGGTGAGATCGACTGTTTTACCCGATCGATATTCT 358
Query 355 CTTCCGATTGTAATCAAAGCCGCCGTTCAGATTCATGATTTTCCGTTGGGAAAGCAGTTT 414
|||||||||||||||||||| |||||||| |||||||||||| ||||||||||| || ||
Sbjct 359 CTTCCGATTGTAATCAAAGCAGCCGTTCAAATTCATGATTTTACGTTGGGAAAGGAGCTT 418
Query 415 CATTCCGTCGCCGTGAGGTTAGGTTTCGTCGGAGACGAGTTCTGCGAGAGTGGATTCATT 474
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 419 CATTCCGTCGCCGTTAGGTTAGGGTTCGTCGGAGATGAGTTCTGCGAGAGTGGGTTCATT 478
Query 475 ACGTTGTATTGTAAAGCAGGGGAATTGGAGAATGCACGTAACGTGTTCGATGAAAATCCT 534
|| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 479 ACATTGTATTGTAAAGCAGGGGAATTTGAGAACGCACGTAAGGTGTTCGATGAAAATCCT 538
Query 535 GAGAGAAAGTTGGGGTCTTGGAACGCTATTATCGGAGGGTTGAATCACGCGGGTCGAGCT 594
||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 539 GAGAGAAAGCTGGGGTCTTGGAACGCCATTATCGGAGGGTTGAATCACGCTGGTCGAGCT 598
Query 595 AACGAGGCGGTTGAAATGTTTATGGAGATGAGAAGGAGTGGATTTGAGCCGGATGATTTC 654
||||||||||| ||||||||| |||| |||| |||||||||| ||||||| |||||||||
Sbjct 599 AACGAGGCGGTGGAAATGTTTGTGGATATGAAAAGGAGTGGACTTGAGCCTGATGATTTC 658
Query 655 ACTATGGTGAGTGTGACTTCAGCTTGTGGAGGATTAGGTGACTTGAACTTAGCTTTTCAG 714
|||||||| ||||||||| | |||||||||||||||||||||||| ||| |||||||||
Sbjct 659 ACTATGGTTAGTGTGACTGCTTCTTGTGGAGGATTAGGTGACTTGAGCTTGGCTTTTCAG 718
Query 715 TTGCATAAATGCGTTTTACAAGCTAAGACCGAAGAGAAGTCTGATATCATGATGATGAAT 774
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 719 TTGCATAAATGCGTTCTACAAGCTAAGACCGAAGAGAAGTCTGATATCATGATGCTGAAT 778
Query 775 TCGCTCATCGACATGTATGGAAAATGCGGGCGTATGGATTTCGCGATTCA-AGTGTTCGA 833
|||||||| || |||||||||||||| |||||||||||||| |||| ||| | | |||||
Sbjct 779 TCGCTCATTGATATGTATGGAAAATGTGGGCGTATGGATTTAGCGAGTCACA-TATTCGA 837
Query 834 GGAGATGCCACAGAGAAACGTTGTCTCATGGAGTTCAATGATCACGGGTTACGCAGCTAA 893
||| |||| |||||||||||||||||| |||||||| |||||| |||||||||||||||
Sbjct 838 GGAAATGCGACAGAGAAACGTTGTCTCTTGGAGTTCTATGATCGTGGGTTACGCAGCTAA 897
Query 894 CGGGAATACATTAGAAGCCTTGGAATGCTTCCGTCAGATGAGAGAATTCGGTGTCAGACC 953
||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||
Sbjct 898 CGGGAATACATTAGAGGCTTTAGAATGCTTTCGTCAGATGAGAGAATTCGGTGTCAGACC 957
Query 954 AAACAAGATCACGTTCGTTGGAGTCCTTAGTGCTTGCGTCCATGGAGGTCTTGTGGAGGA 1013
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 958 AAACAAGATCACGTTCGTTGGAGTTCTCAGTGCTTGCGTCCATGGAGGTCTTGTGGAGGA 1017
Query 1014 AGGAAAAGCGTATTTCGCAATGATGAAGTCAGAGTTCAATCTAGAACCGGGATTATCGCA 1073
||||||| | ||||| || |||||||||||||||||| | ||||||||||||||||||||
Sbjct 1018 AGGAAAAACATATTTTGCGATGATGAAGTCAGAGTTCGAGCTAGAACCGGGATTATCGCA 1077
Query 1074 TTACGGATGCATAGTTGATCT-TCTGAGCCGGGACGGGCAGCTTAAGGAGGCCAAGAAAG 1132
||||||||||||||||||||| | ||||||| |||||||||||||||||||| |||||||
Sbjct 1078 TTACGGATGCATAGTTGATCTAT-TGAGCCGTGACGGGCAGCTTAAGGAGGCAAAGAAAG 1136
Query 1133 TTGTGGAAGAGATGCCGATGAAGCCTAACGTGATGGTTTGGGGTTGTTTGATGGGTGGGT 1192
|||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1137 TTGTTGAGGAGATGCCGATGAAGCCTAACGTGATGGTTTGGGGTTGTTTGATGGGAGGGT 1196
Query 1193 GTGAGAAGTTTGGGGATGTTGAGATGGCTGAGTGGGTGGCTCGATACATGGTTGAGCTAG 1252
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1197 GTGAGAAGTTTGGGGATGTTGAGATGGCTGAGTGGGTGGCTCCATACATGGTTGAGCTTG 1256
Query 1253 AGCCGTGGAACGATGGTGTTTATGTGGTCTTGGCTAATGTGTATGCGCTAAGAGGGATGT 1312
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 1257 AGCCGTGGAACGATGGTGTTTATGTTGTCTTGGCTAATGTGTATGCACTCAGAGGGATGT 1316
Query 1313 GGAAAGATGTTGAGAGAGTTAGGAAGATGATGAAGGA-GAAGAAGGTTGCTAAGATTCCT 1371
|||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 1317 GGAAAGATGTTGAGAGAGTTAGGAAGTTGATGAAG-ACGAAGAAGGTTGCTAAGATTCCT 1375
Query 1372 GCCTGTAGCTATGCTTCAACAACATTTTGA 1401
|||| ||||||||||||||| |||||||||
Sbjct 1376 GCCTATAGCTATGCTTCAACGACATTTTGA 1405
> AT1G77150.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:28992876-28993170 REVERSE LENGTH=237
Length=237
Score = 215 bits (116), Expect = 1e-54
Identities = 136/145 (94%), Gaps = 4/145 (3%)
Strand=Plus/Plus
Query 1033 ATGATGAAGTCAGAGTTC-AATCTAGAACCGGGATTATCGCATTACGGATGCATAGTTGA 1091
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGATGAAGTCAGAGTTCGAA-CTAGAACCAGGATTATCGCATTACGGATGCATAGTTGA 59
Query 1092 TCT-TCTGAGCCGGGACGGGCAGCTTAAGGAGGCCAAGAAAGTTGTGGAAGAGATGCCGA 1150
||| | ||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 60 TCTGT-TGAGCCGTGACGGGCAGCTTAAGGAGGCCAATAAAGTTGTTAAAGAGATGCCGA 118
Query 1151 TGAAGCCTAACGTGATGGTTTGGGG 1175
|||||||||||||||||||||||||
Sbjct 119 TGAAGCCTAACGTGATGGTTTGGGG 143
Score = 150 bits (81), Expect = 3e-35
Identities = 91/96 (95%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 1306 GGGATGTGGAAAGATGTTGAGAGAGTTAGGAAGATGATGAAGGAGAAGAAGGTTGCTAAG 1365
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 142 GGGATGTGGAAAGATGTTGAGAGAGTTAGGAAGTTGATGAAGAAGAAGAAGGTTGCTAAG 201
Query 1366 ATTCCTGCCTGTAGCTATGCTTCAACAACATTTTGA 1401
|||||||||| ||||||||||||||| ||| |||||
Sbjct 202 ATTCCTGCCTATAGCTATGCTTCAACGACAATTTGA 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5