BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476884
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77200.1 | Symbols: | Integrase-type DNA-binding superfamil... 1066 0.0
> AT1G77200.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:29004357-29005091 REVERSE LENGTH=735
Length=735
Score = 1066 bits (577), Expect = 0.0
Identities = 691/745 (93%), Gaps = 11/745 (1%)
Strand=Plus/Plus
Query 1 ATGACCGAGTCATCCATCACCTCCGTCAAACAGTCGTCTCCGGTGCCGGAGGAGGAGGTT 60
||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| |
Sbjct 1 ATGACCGAGTCATCCATTATCTCCGTCAAACAATCGTCTCCGGTGCCGGAGGAGGA-G-- 57
Query 61 GatcatcatcatcatcatcatcaAGAAGAGTCCCACCGAAACAACAACAAGAAACGTGTT 120
| ||||||||||||| | ||| |||| |||||||||| ||||| ||||||||||||
Sbjct 58 G---ATCATCATCATCA-C--CAACAAGACTCCCACCGAACCAACACCAAGAAACGTGTA 111
Query 121 AGACCCGACCCGGGTTACCGAGGCGTCCGGATGCGAACGTGGGGCAAATGGGTCTCCGAG 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 AGATCCGACCCGGGTTACCGAGGCGTCCGGATGCGAACGTGGGGCAAATGGGTCTCCGAG 171
Query 181 ATCCGAGAGCCCCGCAAGAAAAGTCGAATCTGGCTCGGTACTTTCTCCACACCGGAGATG 240
||||||||||| |||||||| || ||||||||||| || ||||||||||||||||| |||
Sbjct 172 ATCCGAGAGCCTCGCAAGAAGAGCCGAATCTGGCTAGGCACTTTCTCCACACCGGAAATG 231
Query 241 GCGGCGCGTGCACATGACGCAGCTGCTCTCACCATTAAAGGGACTTCCGCCGTCCTCAAC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 232 GCGGCGCGTGCACATGACGCAGCTGCTCTCACCATTAAAGGAACTTCCGCCGTCCTCAAC 291
Query 301 TTCCCGGAGCTCGCCACTCACCTTCCCCGTCCAGCTTCCTCCTCTCCTCGCGACGTTCAA 360
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 292 TTCCCGGAGCTCGCCACTTACCTTCCCCGTCCAGCTTCCTCCTCTCCACGCGACGTTCAA 351
Query 361 GCAGCAGCTGCCGTAGCAGCCGCCATGGACTTCTCCTCCTCATCCTCCTCCCTCATAGTC 420
|| ||||| |||||||| |||||||||||||||||| |||| |||||||| ||| |||||
Sbjct 352 GCCGCAGCCGCCGTAGCGGCCGCCATGGACTTCTCCCCCTCCTCCTCCTCTCTCGTAGTC 411
Query 421 TCTGATCCGACCACCGTCGTCGTCCCAGCTGAGACTCA-TCTATCTTCCTCAAGCTATTC 479
|| ||||| ||||||||| ||| |||||||||||| || | | |||||||| ||||||||
Sbjct 412 TCCGATCCAACCACCGTCATCGCCCCAGCTGAGACGCAGT-TGTCTTCCTCGAGCTATTC 470
Query 480 GACGTCTACATCATCGTCATTGTCACCATCAAGCGAAGAAGCTGCGTCGACGGCGGAAGA 539
|||| ||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 471 AACGTGTACGTCATCGTCGTTGTCACCGTCAAGCGAAGAAGCTGCGTCGACGGCGGAAGA 530
Query 540 ACTCAGCGAGATAGTGGAGTTACCGAGTCTAGAGACGAGTTACGATGAGTCATGGAGCGA 599
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 531 ACTAAGCGAGATAGTGGAGTTACCGAGTCTAGAGACGAGTTACGATGAGTCATTGAGCGA 590
Query 600 GTTCGTGTACGTTGACTCGGCGTATCCACCTAGTTCGCCTTGGTATATTAATAACTGTTA 659
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 591 GTTTGTGTACGTTGACTCGGCGTATCCACCTAGTTCGCCTTGGTATATTAATAATTGTTA 650
Query 660 TAGCTTTTATTACCACAGCGACGAAAATGGCATTTCGATGGGTGAACCTTTTGACTCTTC 719
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 651 TAGCTTTTATTACCACAGCGACGAAAATGGCATTTCGATGGCTGAACCTTTCGACTCTTC 710
Query 720 CAATTTTGGCCCCCTTTTTCCTTAG 744
|||||||||||||||||||||||||
Sbjct 711 CAATTTTGGCCCCCTTTTTCCTTAG 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5