BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476888
Length=1596
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77240.1 | Symbols: | AMP-dependent synthetase and ligase f... 2228 0.0
AT1G77230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2228 0.0
AT1G21540.1 | Symbols: | AMP-dependent synthetase and ligase f... 148 1e-34
> AT1G77240.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr1:29017958-29019789 REVERSE LENGTH=1832
Length=1832
Score = 2228 bits (1206), Expect = 0.0
Identities = 1375/1459 (94%), Gaps = 2/1459 (0%)
Strand=Plus/Plus
Query 1 ATGGAACTTTTACTCCCACACGCTTCAAACTCCTGTCCTCTCACTGTTCTCGGCTTCTTA 60
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 195 ATGGAACTTTTACTCCCACACGCTTCAAACTCATGTCCTCTCACTGTTCTTGGCTTCTTA 254
Query 61 GAACGAGCCGCCTCCGTCTTCGGCGACTCTCCTTCCCTCCTCCACACAACCACCGTCCAT 120
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 255 GAACGAGCCGCCTCTGTCTTCGGCGACTCTCCTTCACTCCTCCACACAACCACTGTTCAT 314
Query 121 ACTTGGTCTGAAACTCATTCTCGATGTTTCCGCATCGCTTCAACTCTCTCTTCCTCTTCC 180
||||||||||||||||||||||||||| |||| || |||||||||||||||||| |||||
Sbjct 315 ACTTGGTCTGAAACTCATTCTCGATGTCTCCGTATAGCTTCAACTCTCTCTTCCGCTTCC 374
Query 181 CTCGGTATCAACCGTGGCCAAGTTGTCTCTGTTATTGGTCCCAACGTTCCATCTGTTTAC 240
||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 375 CTCGGAATCAACCGCGGCCAAGTTGTCTCTGTTATTGGTCCAAACGTCCCATCTGTCTAC 434
Query 241 GAGCTTCAGTTCGCGGTTCCAATGTCAGGCGCAGTCCTCAACAACATCAACCCGCGTTTA 300
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 435 GAGCTTCAGTTCGCAGTTCCGATGTCAGGCGCAGTCCTCAACAACATCAACCCACGTTTA 494
Query 301 GACGCTCACGCACTTTCCGTCCTTCTGCGTCACAGTGAATCCAAGCTCATGTTTGTTGAC 360
|||||||| ||||| ||||||||||| |||||||| |||||||||||| |||||||||||
Sbjct 495 GACGCTCATGCACTCTCCGTCCTTCTACGTCACAGCGAATCCAAGCTCGTGTTTGTTGAC 554
Query 361 CATCACTCAAGATCTTTAGTCCTCGAAGCTGTCTCGTTCTTGCCCAAGAATGAGAGGCCT 420
||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 555 CATCACTCAAGCTCTTTAGTCCTCGAAGCTGTCTCGTTTTTGCCCAAGGATGAGAGACCT 614
Query 421 CGCCTCATCATCCTCAACGACAGAAATGGCACGCCATCATCTACATCGGCTGACATGGAT 480
|| ||| |||| ||||||||| |||| | || |||||||||| |||| ||||| ||||||
Sbjct 615 CGTCTCGTCATACTCAACGACGGAAACGACATGCCATCATCTTCATCAGCTGATATGGAT 674
Query 481 TTTCTTGACACATACGAAGGGGTGATGGAGAGAGGAGACCCAAGTTTCAAGTGGGTTCGT 540
||||||||||| ||||||||| | |||||||||||||||| || ||||||||||| |||
Sbjct 675 TTTCTTGACACGTACGAAGGGTTTATGGAGAGAGGAGACCTGAGGTTCAAGTGGGTACGT 734
Query 541 CCGAAAAGCGAGTGGGTTCCAATGGTGCTTAACTACACCTCAGGAACTACGTCGTCTCCA 600
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 735 CCTAAAAGCGAGTGGACTCCAATGGTGCTTAACTACACCTCAGGAACTACGTCGTCCCCA 794
Query 601 AAGGGAGTGGTGCATAGCCACAGGTCAGTTTTCATGAGCACTATTAACTCTTTGCTAGAC 660
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 795 AAGGGAGTGGTGCATAGCCACAGATCGGTTTTCATGAGCACTATTAACTCTTTGCTAGAC 854
Query 661 TGGTCTTTGCCTAACTGTCCGGTATACCTGTGGACCCTACCGATGTTCCACGCCAATGGG 720
||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 855 TGGTCTTTGCCTAACCGTCCGGTATACCTGTGGACACTGCCGATGTTCCATGCCAATGGT 914
Query 721 TGGAGCTACACGTGGGCCACAGCAGCTGTGGGGGCCACAAACATCTGTGTCACAAGAGTT 780
||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 915 TGGAGCTACACATGGGCCACAGCAGCTGTGGGAGCCAGAAACATCTGTGTCACAAGAGTT 974
Query 781 GATGCGCCGACTATTTTCAACTTGATCGACAAGTATCAAGTGACCCACATGTGCGCTGCA 840
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 GATGTGCCGACTATTTTCAACTTGATCGACAAGTATCAAGTGACCCACATGTGCGCTGCG 1034
Query 841 CCAATGGTTCTCAACATGTTGACCAATTACCCAGGCCAGAAACCGCTTCAGAGCCCAGTT 900
||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 1035 CCAATGGTTCTCAACATGTTGACTAATCACCCAGCCCAGAAACCGCTTCAGAGCCCAGTT 1094
Query 901 AAGGTTATGACAGCTGGAGCTCCACCACCAGCTACAGTCATCTCCAAGGCTAAGGCACTC 960
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1095 AAGGTTATGACTGCTGGAGCTCCACCACCAGCTACAGTCATCTCCAAGGCTGAGGCGCTT 1154
Query 961 GGTTTCGACGTGGGTCACGGTTACGGGATGACAGAAACCGGCGGTCTGGTTGTCTCGTGC 1020
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1155 GGTTTCGACGTGAGTCACGGTTACGGGATGACAGAAACAGGCGGTCTGGTTGTCTCGTGC 1214
Query 1021 GCATGGAAGCCTGAGTGGGATCGTCTAGAACCAGACGCA-AGAGCAAAACTGAAATCAAG 1079
|||| |||||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 1215 GCATTGAAGCCTGAGTGGGATCGTCTAGAACCAGACG-AGAGAGCAAAACAGAAATCAAG 1273
Query 1080 GCAAGGAATTAAAACTGCGGTATTCGCGGAAGTCGATGTTAGAGACCCATTATCCGGGAA 1139
||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1274 GCAAGGAATTAGAACTGCAGTATTCGCGGAAGTCGATGTTAGAGACCCAATATCCGGGAA 1333
Query 1140 GGGCGTGAAGCATGATGGAGCAACTGTTGGAGAGATCGTCTTCAAAGGCGGTTCGGTCAT 1199
| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1334 GAGCGTGAAGCATGATGGAGCAACTGTGGGAGAGATCGTCTTCAGAGGCGGTTCGGTCAT 1393
Query 1200 GCTGGGTTATTACAAAGACCCAGAAGGCACCGCGGCAAGTATGAGAGAAGACCGATGGTT 1259
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1394 GCTAGGTTATTACAAAGACCCAGAAGGCACCGCAGCAAGTATGAGAGAAGACGGATGGTT 1453
Query 1260 CTACACCGGAGACATTGGTGTAATGCACCCAGATGGTTACTTGGAAGTCAAAGACAGATC 1319
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1454 CTACACCGGAGACATTGGAGTAATGCACCCAGACGGTTACTTGGAAGTCAAAGACAGATC 1513
Query 1320 AAAGGATGTGGTCATTTGCGGAGGAGAGAACATCAGCAGCACGGAACTCGAGGCAGTTCT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 AAAGGATGTGGTCATTTGCGGAGGAGAGAACATCAGCAGCACGGAACTCGAGGCAGTTCT 1573
Query 1380 GTACACAAACCCCGCAATTAAGGAAGCAGCTGTGGTGGCTAAGCCAGACAAGATGTGGGG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 GTACACAAACCCCGCAATTAAGGAAGCAGCTGTGGTGGCTAAGCCAGACAAGATGTGGGG 1633
Query 1440 AGAAACTCCATGTGCATTT 1458
|||||||||||||||||||
Sbjct 1634 AGAAACTCCATGTGCATTT 1652
Score = 239 bits (129), Expect = 7e-62
Identities = 135/138 (98%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 1459 ATAAGGGAGTTTTGTAAAACCAAGCTGCCAAAGTATATGGTTCCAAGGAATGTGGTTTTC 1518
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 ATACGGGAGTTTTGTAAAACCAAGCTGCCAAAGTATATGGTTCCAAGGAATGTGGTTTTC 1754
Query 1519 CTGGAAGAGCTTCCAAAGACTTCTACTGGAAAGATTCAAAAGTTTCTTCTCAGACAAATT 1578
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1755 CTGGAAGAGCTTCCAAAGACTTCTACTGGAAAGATTCAAAAGTTTCTTCTCAGACAAATG 1814
Query 1579 GCTAAGTCCTTTCCTTGA 1596
||||||||||| ||||||
Sbjct 1815 GCTAAGTCCTTGCCTTGA 1832
> AT1G77230.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:29016120-29019768 FORWARD LENGTH=2561
Length=2561
Score = 2228 bits (1206), Expect = 0.0
Identities = 1375/1459 (94%), Gaps = 2/1459 (0%)
Strand=Plus/Minus
Query 1 ATGGAACTTTTACTCCCACACGCTTCAAACTCCTGTCCTCTCACTGTTCTCGGCTTCTTA 60
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2388 ATGGAACTTTTACTCCCACACGCTTCAAACTCATGTCCTCTCACTGTTCTTGGCTTCTTA 2329
Query 61 GAACGAGCCGCCTCCGTCTTCGGCGACTCTCCTTCCCTCCTCCACACAACCACCGTCCAT 120
|||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 2328 GAACGAGCCGCCTCTGTCTTCGGCGACTCTCCTTCACTCCTCCACACAACCACTGTTCAT 2269
Query 121 ACTTGGTCTGAAACTCATTCTCGATGTTTCCGCATCGCTTCAACTCTCTCTTCCTCTTCC 180
||||||||||||||||||||||||||| |||| || |||||||||||||||||| |||||
Sbjct 2268 ACTTGGTCTGAAACTCATTCTCGATGTCTCCGTATAGCTTCAACTCTCTCTTCCGCTTCC 2209
Query 181 CTCGGTATCAACCGTGGCCAAGTTGTCTCTGTTATTGGTCCCAACGTTCCATCTGTTTAC 240
||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 2208 CTCGGAATCAACCGCGGCCAAGTTGTCTCTGTTATTGGTCCAAACGTCCCATCTGTCTAC 2149
Query 241 GAGCTTCAGTTCGCGGTTCCAATGTCAGGCGCAGTCCTCAACAACATCAACCCGCGTTTA 300
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2148 GAGCTTCAGTTCGCAGTTCCGATGTCAGGCGCAGTCCTCAACAACATCAACCCACGTTTA 2089
Query 301 GACGCTCACGCACTTTCCGTCCTTCTGCGTCACAGTGAATCCAAGCTCATGTTTGTTGAC 360
|||||||| ||||| ||||||||||| |||||||| |||||||||||| |||||||||||
Sbjct 2088 GACGCTCATGCACTCTCCGTCCTTCTACGTCACAGCGAATCCAAGCTCGTGTTTGTTGAC 2029
Query 361 CATCACTCAAGATCTTTAGTCCTCGAAGCTGTCTCGTTCTTGCCCAAGAATGAGAGGCCT 420
||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 2028 CATCACTCAAGCTCTTTAGTCCTCGAAGCTGTCTCGTTTTTGCCCAAGGATGAGAGACCT 1969
Query 421 CGCCTCATCATCCTCAACGACAGAAATGGCACGCCATCATCTACATCGGCTGACATGGAT 480
|| ||| |||| ||||||||| |||| | || |||||||||| |||| ||||| ||||||
Sbjct 1968 CGTCTCGTCATACTCAACGACGGAAACGACATGCCATCATCTTCATCAGCTGATATGGAT 1909
Query 481 TTTCTTGACACATACGAAGGGGTGATGGAGAGAGGAGACCCAAGTTTCAAGTGGGTTCGT 540
||||||||||| ||||||||| | |||||||||||||||| || ||||||||||| |||
Sbjct 1908 TTTCTTGACACGTACGAAGGGTTTATGGAGAGAGGAGACCTGAGGTTCAAGTGGGTACGT 1849
Query 541 CCGAAAAGCGAGTGGGTTCCAATGGTGCTTAACTACACCTCAGGAACTACGTCGTCTCCA 600
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1848 CCTAAAAGCGAGTGGACTCCAATGGTGCTTAACTACACCTCAGGAACTACGTCGTCCCCA 1789
Query 601 AAGGGAGTGGTGCATAGCCACAGGTCAGTTTTCATGAGCACTATTAACTCTTTGCTAGAC 660
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1788 AAGGGAGTGGTGCATAGCCACAGATCGGTTTTCATGAGCACTATTAACTCTTTGCTAGAC 1729
Query 661 TGGTCTTTGCCTAACTGTCCGGTATACCTGTGGACCCTACCGATGTTCCACGCCAATGGG 720
||||||||||||||| ||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 1728 TGGTCTTTGCCTAACCGTCCGGTATACCTGTGGACACTGCCGATGTTCCATGCCAATGGT 1669
Query 721 TGGAGCTACACGTGGGCCACAGCAGCTGTGGGGGCCACAAACATCTGTGTCACAAGAGTT 780
||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1668 TGGAGCTACACATGGGCCACAGCAGCTGTGGGAGCCAGAAACATCTGTGTCACAAGAGTT 1609
Query 781 GATGCGCCGACTATTTTCAACTTGATCGACAAGTATCAAGTGACCCACATGTGCGCTGCA 840
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 GATGTGCCGACTATTTTCAACTTGATCGACAAGTATCAAGTGACCCACATGTGCGCTGCG 1549
Query 841 CCAATGGTTCTCAACATGTTGACCAATTACCCAGGCCAGAAACCGCTTCAGAGCCCAGTT 900
||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 1548 CCAATGGTTCTCAACATGTTGACTAATCACCCAGCCCAGAAACCGCTTCAGAGCCCAGTT 1489
Query 901 AAGGTTATGACAGCTGGAGCTCCACCACCAGCTACAGTCATCTCCAAGGCTAAGGCACTC 960
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1488 AAGGTTATGACTGCTGGAGCTCCACCACCAGCTACAGTCATCTCCAAGGCTGAGGCGCTT 1429
Query 961 GGTTTCGACGTGGGTCACGGTTACGGGATGACAGAAACCGGCGGTCTGGTTGTCTCGTGC 1020
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1428 GGTTTCGACGTGAGTCACGGTTACGGGATGACAGAAACAGGCGGTCTGGTTGTCTCGTGC 1369
Query 1021 GCATGGAAGCCTGAGTGGGATCGTCTAGAACCAGACGCA-AGAGCAAAACTGAAATCAAG 1079
|||| |||||||||||||||||||||||||||||||| | |||||||||| |||||||||
Sbjct 1368 GCATTGAAGCCTGAGTGGGATCGTCTAGAACCAGACG-AGAGAGCAAAACAGAAATCAAG 1310
Query 1080 GCAAGGAATTAAAACTGCGGTATTCGCGGAAGTCGATGTTAGAGACCCATTATCCGGGAA 1139
||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1309 GCAAGGAATTAGAACTGCAGTATTCGCGGAAGTCGATGTTAGAGACCCAATATCCGGGAA 1250
Query 1140 GGGCGTGAAGCATGATGGAGCAACTGTTGGAGAGATCGTCTTCAAAGGCGGTTCGGTCAT 1199
| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1249 GAGCGTGAAGCATGATGGAGCAACTGTGGGAGAGATCGTCTTCAGAGGCGGTTCGGTCAT 1190
Query 1200 GCTGGGTTATTACAAAGACCCAGAAGGCACCGCGGCAAGTATGAGAGAAGACCGATGGTT 1259
||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1189 GCTAGGTTATTACAAAGACCCAGAAGGCACCGCAGCAAGTATGAGAGAAGACGGATGGTT 1130
Query 1260 CTACACCGGAGACATTGGTGTAATGCACCCAGATGGTTACTTGGAAGTCAAAGACAGATC 1319
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1129 CTACACCGGAGACATTGGAGTAATGCACCCAGACGGTTACTTGGAAGTCAAAGACAGATC 1070
Query 1320 AAAGGATGTGGTCATTTGCGGAGGAGAGAACATCAGCAGCACGGAACTCGAGGCAGTTCT 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 AAAGGATGTGGTCATTTGCGGAGGAGAGAACATCAGCAGCACGGAACTCGAGGCAGTTCT 1010
Query 1380 GTACACAAACCCCGCAATTAAGGAAGCAGCTGTGGTGGCTAAGCCAGACAAGATGTGGGG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GTACACAAACCCCGCAATTAAGGAAGCAGCTGTGGTGGCTAAGCCAGACAAGATGTGGGG 950
Query 1440 AGAAACTCCATGTGCATTT 1458
|||||||||||||||||||
Sbjct 949 AGAAACTCCATGTGCATTT 931
Score = 239 bits (129), Expect = 7e-62
Identities = 135/138 (98%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 1459 ATAAGGGAGTTTTGTAAAACCAAGCTGCCAAAGTATATGGTTCCAAGGAATGTGGTTTTC 1518
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 ATACGGGAGTTTTGTAAAACCAAGCTGCCAAAGTATATGGTTCCAAGGAATGTGGTTTTC 829
Query 1519 CTGGAAGAGCTTCCAAAGACTTCTACTGGAAAGATTCAAAAGTTTCTTCTCAGACAAATT 1578
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 CTGGAAGAGCTTCCAAAGACTTCTACTGGAAAGATTCAAAAGTTTCTTCTCAGACAAATG 769
Query 1579 GCTAAGTCCTTTCCTTGA 1596
||||||||||| ||||||
Sbjct 768 GCTAAGTCCTTGCCTTGA 751
> AT1G21540.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr1:7548614-7550565 REVERSE LENGTH=1841
Length=1841
Score = 148 bits (80), Expect = 1e-34
Identities = 112/128 (88%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 1459 ATAAGGGAGTTTTGTAAAACCAAGCTGCCAAAGTATATGGTTCCAAGGAATGTGGTTTTC 1518
||||||||||||||||| || | | | || |||||||||||||||||||| || ||||
Sbjct 1560 ATAAGGGAGTTTTGTAAGACGAGGTTACCTAAGTATATGGTTCCAAGGAAAGTAATTTTT 1619
Query 1519 CTGGAAGAGCTTCCAAAGACTTCTACTGGAAAGATTCAAAAGTTTCTTCTCAGACAAATT 1578
| ||| ||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 1620 CAGGAGGAGCTTCCAAAGACTTCTACTGGAAAGATACAGAAGTTTCTTCTAAGACAAATG 1679
Query 1579 GCTAAGTC 1586
||||||||
Sbjct 1680 GCTAAGTC 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78814855650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5