BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476892
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77290.1 | Symbols: | Glutathione S-transferase family prot... 1498 0.0
> AT1G77290.1 | Symbols: | Glutathione S-transferase family protein
| chr1:29038375-29039838 FORWARD LENGTH=1366
Length=1366
Score = 1498 bits (811), Expect = 0.0
Identities = 876/908 (96%), Gaps = 2/908 (0%)
Strand=Plus/Plus
Query 305 GCTTGAATGTTTAA-TCCCACTGCTCCAATGTAATTAGAATTCTGCTTTGTTTGACTAAT 363
|||||||||||||| ||||||||||||||| |||||||| |||||| ||||||| ||||
Sbjct 437 GCTTGAATGTTTAACCCCCACTGCTCCAATGAAATTAGAA-TCTGCTCTGTTTGAATAAT 495
Query 364 ATGGTAGGAGCCTTGGACAAATAGTTGGAGGGAATTGGTCTGAAGCAATGCAGTTATATC 423
||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||
Sbjct 496 TTGGTAGGAGCCTTGGACAAATAGTTGGAGAGAACTGGTCTGAAACAATGCAGTTATATC 555
Query 424 ATCATCCTTACTCATTAGACAGCCAAAGAGTGAGACTAGCTTTGGAAGAGAAAGGCATTG 483
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 ACCATCCTTACTCAATAGACAGCCAAAGAGTGAGACTAGCTTTGGAAGAGAAAGGCATTG 615
Query 484 ATTACACATCATACCATGTGAATCCCATCACCGGCAAGCACATGGACCCTTCCTTTTTTA 543
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 616 ATTACACATCATACCATGTCAATCCCATCACAGGCAAGCACATGGACCCTTCCTTCTTTA 675
Query 544 GGATGAATCCCAACGCTAAACTTCCCGTTTTCAGGAATGGTTCTCACATCATTTTGGACA 603
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 GGATGAATCCCAACGCCAAACTTCCCGTTTTCAGGAATGGTTCTCACATCATTTTGGACA 735
Query 604 CTATTGAGATCATAGAGTACTTAGAGAGAATAGCTGAGGTTTCCTCTGGTATAGAGGATG 663
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 736 CTATTGAGATCATAGAGTACTTAGAGAGAATAGCTGAAGTTTCCTCTGGTATAGAAGATG 795
Query 664 CTACTTTTGGCAGAGAAGTTCTTGAATGGATGCGGAAGATTAGGGAATGGGACTCCAAGC 723
|||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |
Sbjct 796 CTACTTTTAATAGAGAAGTTGTTGAATGGATGCGGAAGATTAGGGAATGGGAGTCCAAAC 855
Query 724 TTTTCACTCTTGCTCACATACCGGATAATCGTTGCCTCTATGTTTCCAAGTTCTTGAGGA 783
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 856 TTTTCACTCTTGCTCACATACCGGATAATCGTCGCCTCTATGTTTCCAAGTTCTTGAGGA 915
Query 784 TGGTTGTGATTGCAAGGATGGCTGAGTCTCCAGACTTAGCTAGTGCTTACCATAGGAAGC 843
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TGGTAGTGATTGCAAGGATGGCTGAGTCTCCAGACTTAGCTAGTGCTTACCATAGGAAGC 975
Query 844 TAAGGGAAGCGTACGATACAGAAGACAAACTAAAAGACCCTGGGGCCTTAAGGAGAAGCA 903
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 TAAGGGAAGCATACGATACAGAAGACAAACTAAAAGACCCTGGGGCCTTAAGGAGAAGCA 1035
Query 904 AAGACCATTTGCTTAGGCTTCTAGATGAGGTTGAAACAAAGCTAGAGGGGACAACGTATT 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1036 AAGACCATTTGCTTAGGCTTCTAGATGAGGTTGAAACAAAGCTAGAGGGGACAACCTATT 1095
Query 964 TGGCAGGGAATGAGTTTAGTATGGCTGATGTAATGCTAATCCCGGTGCTAGCTCGGTTAT 1023
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 TGGCTGGGAATGAGTTTAGTATGGCTGATGTAATGCTAATCCCGGTGCTAGCTCGGTTAT 1155
Query 1024 CGCTCTTGGATTTGGAAGAGGAGTATATAAGTAGCAGGAAGAATCTTGCTGAGTATTGGG 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 CGCTCTTGGATTTGGAAGAGGAGTATATAAGTAGCAGGAAGAATCTTGCTGAGTATTGGG 1215
Query 1084 CTGTTGTGAGGAGGCGGCCAAGTTACAAGAAGGTAATTGGAAGGTACTTCAATGGCTGGA 1143
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 CTCTTGTGAGGAGGCGGCCAAGTTACAAGAAGGTAATTGGAAGGTACTTCAATGGCTGGA 1275
Query 1144 GAAAATATGCAACACTTGTAAAAACTTGGATGTTTGTTAGAGTCAGAAGTTTGCTCAGAA 1203
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1276 GAAAATATGCAACACTTGTAAAAACTTGGATGTTTGTTAGAGTCAGAAGTTTACTCAGAA 1335
Query 1204 AATACTGA 1211
|||| |||
Sbjct 1336 AATATTGA 1343
Score = 276 bits (149), Expect = 4e-73
Identities = 241/281 (86%), Gaps = 23/281 (8%)
Strand=Plus/Plus
Query 35 ATTCAGTTCTTG-T-TCGTC-TTAGTTCTCGAAGGTG-TGTTCTGTTTTCTTGGGTTA-G 89
|||||||||||| | ||||| || |||||||||||| ||||| ||||| ||||| || |
Sbjct 116 ATTCAGTTCTTGATCTCGTCTTTCTTTCTCGAAGGTGTTGTTCAGTTTTATTGGG-TATG 174
Query 90 TCCTT-T--TATTCCTTGTCTTGTTCTTGTCTTTGTTTGCTTCAATCTCTGTTTGAAGCT 146
| ||| | |||| | ||| ||||||||||||| |||||||||||||||||||| |||
Sbjct 175 T-CTTGTCATATT--TCGTC-AGTTCTTGTCTTTGCTTGCTTCAATCTCTGTTTGACGCT 230
Query 147 GTTCTG-T-T-TTATGTTCTATATGGTCTCAAGCTCATGTGTTTGATTCGATTCCTTAAG 203
|||||| | | ||||||| |||||| | ||||||||||||||||||||||||||||| |
Sbjct 231 GTTCTGTTCTGTTATGTTTTATATGTTTTCAAGCTCATGTGTTTGATTCGATTCCTTCAT 290
Query 204 TATCGTGCTTCAGCCCCTTTTTAGTCCCAAATATGAATCTCTCTTTGTTGAAGTTTCAGG 263
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 291 TATCGTGCTTCAGCCCCTTTTTAGTCCCAGATATGAATCTCTCTTTGTTGAAGTTTC-G- 348
Query 264 TCTATGAGGTTAACGGTTTCTCCTGAAATGTTAATTTGGTG 304
| | | ||||| |||||||||| |||||||||||||||
Sbjct 349 ---A-G-GTTTAACAGTTTCTCCTGTAATGTTAATTTGGTG 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59487645825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5