BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476896 Length=2409 Score E Sequences producing significant alignments: (Bits) Value AT1G77310.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2146 0.0 > AT1G77310.1 | Symbols: | BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT1G21610.1); Has 493 Blast hits to 482 proteins in 163 species: Archae - 0; Bacteria - 100; Metazoa - 172; Fungi - 66; Plants - 65; Viruses - 7; Other Eukaryotes - 83 (source: NCBI BLink). | chr1:29051505-29056339 FORWARD LENGTH=2480 Length=2480 Score = 2146 bits (1162), Expect = 0.0 Identities = 1363/1456 (94%), Gaps = 29/1456 (2%) Strand=Plus/Plus Query 1 CGCACAACGTTCTAACAAAAATCATCCTCTCAGTTGCAA--TCTCTC-----CTCCT-CT 52 ||| ||||||| ||||||||||| ||||||||||| ||| |||||| ||||| || Sbjct 3 CGCGCAACGTTGTAACAAAAATCGTCCTCTCAGTTCCAATCTCTCTCAGATTCTCCTCCT 62 Query 53 CATCA-AGATTCCCCACTCCTTTGATTCTTGT-CCAGAGTCACGTCCTCTCCGATCCGGG 110 ||||| | |||||||||||||||||||||||| ||||||||||||||||||| || |||| Sbjct 63 CATCACA-ATTCCCCACTCCTTTGATTCTTGTCCCAGAGTCACGTCCTCTCCTATTCGGG 121 Query 111 TCTCCACAGAGTCTAACTCTGACCCGACCCGACCCAATTCACT-AATGGAGGACGAACCA 169 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 122 TCTCTACAGAGTCTAACTCTGACCCGACCCGACCCAATTCACTAAATGGAGGACGAACCA 181 Query 170 AAGCTCCCAACCGATGACGGTCCAACTTTCGGCGAGTCGTGTAAAATCTCGTCAGCGATA 229 |||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |||| Sbjct 182 AAGCTCCCAACCGATGACGGTCCAACTTTCAACGAATCGTGTAAAATCTCGTCTGAGATA 241 Query 230 TTGACTGCCGGTGATCGGAAATTACTTAAAGTTGAACTCCTTC-AAGAGGAGACCACGCA 288 ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 242 TTGACCGCCGGTGATCGGAAATTACTTAAAGTTGAACTCC-TCAAAGAGGAGACCACGCT 300 Query 289 CGTGTCGTGGAAGAAGCTTATGGACGAGGCTTGCAAGGAAAA---CGGCTTGTTCGCTTC 345 ||| |||||||||||||||||||| |||||| |||| ||||| ||||||||||| ||| Sbjct 301 CGTATCGTGGAAGAAGCTTATGGATGAGGCTAGCAAAGAAAACGGCGGCTTGTTCGTTTC 360 Query 346 GCCCCCCGAACGGCCTCCTAATGCTAACCCTAACCTCGACTTTCGCCTTGCACCGGGGGC 405 | | |||||||||| || |||||| |||||||||||||| |||||||||||||||||||| Sbjct 361 GGCTCCCGAACGGCTTCTTAATGCCAACCCTAACCTCGAGTTTCGCCTTGCACCGGGGGC 420 Query 406 ACAAACAGAAAATGAAATGGTGAATCAACCTCATCCTAATCGTCTTAACTCCGTTATAGC 465 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 421 ACAAACAGAGAATGAAATGGTGAATCAACCTCATCCTAATCGTCTTAACTCTGTTATAGC 480 Query 466 AAAGATTGAGAGACTTTATATGGGTAAAGACGGTAGTGATGGGGAAGAGTTAGATGGTGC 525 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 481 CAAGATTGAGAGACTTTATATGGGTAAAGACGGTAGTGATGGGGAAGAGTTAGACGGTGC 540 Query 526 TCCTGACGATGACGACTATGACACTGAAGATTCATTTATCGATGATGCTGAATTGGATGA 585 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TCCTGACGATGATGACTATGACACTGAAGATTCATTTATCGATGATGCTGAATTGGATGA 600 Query 586 GTATTTTGAAGTTGACAATTCGCCAATAAAACATGATGGATTTTTTGTCAATAGAGGAAA 645 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 601 GTATTTTGAAGTTGATAATTCGCCAATTAAACATGATGGATTTTTTGTCAATAGAGGAAA 660 Query 646 GTTAGAACGAATTGAACCTTCAGCTACATCAAACCAGCAGCAACCAAAGAAAAGGCGAAG 705 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 661 GTTAGAACGAATTGAACCTTCAGCTACATCGAACCAGCAGCAACCAAAGAAAAGGCGAAG 720 Query 706 GAAGGAGTCAGCAAAACCTTGTGGCGACGTTGTTGATGTATCCAGAAAACAAGCCAAAAT 765 ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| || Sbjct 721 GAAGGAGTCAGCAAAACCTTGTGGCGATGTTGTTGATGTATCCAGAAAACGAGCCAAGAT 780 Query 766 GGCTAAGACGGCTGGGGGAAAGGATCAATCAGCTGCTCCTGGGCCCTCTTCGAAGAAAAT 825 |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 781 GGCTAAGACGGCTGGGGGAAAGGATCAATCTGCTTCTCCTGGGCCCTCTTCGAAGAAAAT 840 Query 826 TTCCAATGATTCAAAGACAGTGCAAGATTCGTTTTCCCCTTTGAAAGCTCAAAATGGCAA 885 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 841 TTCCAATGATTCAAAGACGGTGCAAGATTCGTTTTCCCCTTTGAAAGCGCAAAATGGCAA 900 Query 886 TGATTCCTTAGTTTTGGAAAATGTGAAGCATACTGATAAAGCGAATCATCAGCCAATGAA 945 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 901 TGATTCCTTAGTTTTGGAAAATGTGAAGCATACTGATAAAGCGAATCACCAGCCAATGAA 960 Query 946 TGCCACGAGTCCGAAATCAAAGGCAGCTGGATCGTCTTTCCCCCTTCATCTGAAGTGCA- 1004 ||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||| Sbjct 961 TGCCACGAGTCCGAAGTCAAAGGCAGCTGGATCTTCTGGCCCCCTTCATCCGAAGTGCAG 1020 Query 1005 CAAGCAAAA------ATGAACAATCTAATTCCCTTCCCGGAATATCTCGGCCAAATGATT 1058 | ||||||| |||||||||||||||||| ||| |||| |||||||||||||| || Sbjct 1021 C-AGCAAAAGTGTTCATGAACAATCTAATTCCCCTCCAGGAAAATCTCGGCCAAATGTTT 1079 Query 1059 CGGCAAAATCAGCAGTAGTTCGTCAGCAAGCTAACAATGGCATGCCTGACCTGGACATTG 1118 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1080 CGGCAAAATCAGCAGTAGTTCGTCAGCAAGTTAACAATGGCATGCCTGACCTGGACATTG 1139 Query 1119 CAACGGAAAGCGAAAA-ATCTGTTCAAATATCTAAAAAAGGCGGTTCGAATGGCAGGCCT 1177 ||||||||||| |||| |||| ||||||||||||||||| ||||||| |||||| ||||| Sbjct 1140 CAACGGAAAGC-AAAACATCTATTCAAATATCTAAAAAAAGCGGTTCAAATGGCCGGCCT 1198 Query 1178 AAATCCTCAACACTTGAGAAAGCCATCAGGGAA-TTGGAGAAGGTGGTCGCTGAATCAAG 1236 |||| ||| ||||||||||||||||||| |||| ||||||||| |||||||||||||||| Sbjct 1199 AAATACTCGACACTTGAGAAAGCCATCA-GGAATTTGGAGAAGTTGGTCGCTGAATCAAG 1257 Query 1237 GCCTCCTGCTGTCACTGAGAATCAAGATGCCGATATCTCTTCCCAAGCAGTGAAGAGGGG 1296 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1258 GCCTCCTGCTGCCACTGAGAATCAAGATGCCGATATCTCTTCCCAAGCAGTGAAGAGGGG 1317 Query 1297 ATTGCCAGGAGATGTAAAATTGAATCTTGCTAAAGTTGCTAGAATCGCGCATGCGAGCCA 1356 |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1318 ATTGCCAGGAGATGTAAAATTGCATCTTGCTAAAGTTGCTAGAATCGCGTATGCGAGCCA 1377 Query 1357 AGGAGATATATCAGGAGAGTTAATCAATCGTCTCATGAGCATTGTCGGTCATCTAATACA 1416 ||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1378 AGGTGAAATATCAGGAGAGTTAATCAATCGTCTCATGGGCATTGTCGGTCATCTAATACA 1437 Query 1417 GATTAGATCACTTAAG 1432 |||||||||||||||| Sbjct 1438 GATTAGATCACTTAAG 1453 Score = 1262 bits (683), Expect = 0.0 Identities = 836/909 (92%), Gaps = 14/909 (2%) Strand=Plus/Plus Query 1505 GAAACAAGTCAAGAAGCTGGAACATCAGACGATTTTCAGGATGTTGGCTCTCTTGGAAAG 1564 ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1580 GAAACAAATCAAGAAGCTGGAACATCAGACGATTTTCAGGATGTTGGATCTCTTGGAAAG 1639 Query 1565 CCACCTGTGAAGAAGTTTGTCATGGATGTGGCGCTGGAGGCAAAATTGTGTGATCTATAT 1624 ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1640 TCACCTGTGAAGAAGTTTGTCATGGATGTGGCGCTGGAGGAAAAATTGTGTGATCTATAT 1699 Query 1625 GACGTGTTTGTTGAGGGAATGGATGAACATTCAGGTCCACAGATTAGAAAGCTTTATTCA 1684 |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||| Sbjct 1700 GACGTGTTTGTTGAGGGAATGGATGAACATTCAGGTTCACAAATCAGAAAGCTTTATTCA 1759 Query 1685 GATCTAGCTGAACTCTGGCCAAATAGGTTAGTGGACAATCATGAGATCAGGCGTGCCATT 1744 ||||||||| |||| ||||| ||||| ||||| ||||||||||||||||||||||||||| Sbjct 1760 GATCTAGCTCAACTGTGGCCCAATAGTTTAGTTGACAATCATGAGATCAGGCGTGCCATT 1819 Query 1745 TGCCGGGAAAAGGAAAGGCGGAGAGCATTGAAAGGAAACCTTGGGAAGGAGATGGATCAA 1804 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 1820 TGCCGGGAAAAGGAAAGGCGGAGAGCATTGGAAGGAAACATTGGGAAGGAGATGGATCAA 1879 Query 1805 ACGACGATAGCAAAGAAGAAAGAGACACAATTGGTCCCAAAATCAGAGGGTACTACTTAT 1864 |||| |||| ||||||||||| |||||||||||||||| ||||| ||||||| ||||||| Sbjct 1880 ACGAAGATAACAAAGAAGAAACAGACACAATTGGTCCCTAAATCTGAGGGTATTACTTAT 1939 Query 1865 CCCGACAAGGCTTCAGGTGTTGGAGTTATAGCGAGTGTTGTCCTAAGTGCAACTACCACG 1924 ||||||||| |||||||||||| ||||| ||| ||||||||||||| |||||| |||||| Sbjct 1940 CCCGACAAGACTTCAGGTGTTGAAGTTAAAGCAAGTGTTGTCCTAACTGCAACCACCACG 1999 Query 1925 TCCTTAGTGGACTGTGAAGCTGCATCAGATTCGTCCTGTGAAAGGTCAAAGAAGCAAAAT 1984 ||||||||||||||| || ||||| |||| ||||||| ||||||||||||| ||||| || Sbjct 2000 TCCTTAGTGGACTGTCAACCTGCAGCAGACTCGTCCTTTGAAAGGTCAAAGCAGCAACAT 2059 Query 1985 GAGAAACTAAAGGGAACCTCGAGCTTAAGCAACCCTGCAGCAGAAGGAAAGACAGTCAGA 2044 |||||| ||||| |||| |||||||||||||| ||||||||||||||||||| ||||||| Sbjct 2060 GAGAAATTAAAGCGAACTTCGAGCTTAAGCAATCCTGCAGCAGAAGGAAAGAAAGTCAGA 2119 Query 2045 AGAAAGACAGAACCAGCTGTAGAAAAAACTCAGCTGCCCGCAGAGAAACCTCTCGTTCTG 2104 |||||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||| Sbjct 2120 AGAAAGACAGAACCAGCTCTAGAAGAAACTCACCTGCCCGCAGAGAAACCCCTCGTTCTG 2179 Query 2105 GCCCTGAAGCAGCAGAAACATCCACAGTCCAAGGCACATAAAAAGGCACAGGTACATCCA 2164 |||||||||| ||||| ||||| | | |||||| |||||||| ||| ||||||||||||| Sbjct 2180 GCCCTGAAGCGGCAGACACATCTAAAATCCAAGACACATAAACAGGTACAGGTACATCCA 2239 Query 2165 CAGTCCAAGGCACATAAACAGGCACAAGTACATG-AACAGGCCAAGACACAAACACAGAC 2223 |||||||||||||||||||||||||| |||||| || ||||||||||||| ||| Sbjct 2240 CAGTCCAAGGCACATAAACAGGCACAGGTACATCCAA-AGGCCAAGACACA------GAC 2292 Query 2224 TCCTCCAGACCTGAACCTGCCAAGTTAGGTACTCCAGCTTAG-ttttttttGTCAAAGTC 2282 ||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| Sbjct 2293 TCCTCCAGACCTGAACCTGCCAAGTTAGGTACTACAGCTTAGATTTTTTTTCTCAAAGTC 2352 Query 2283 TGGCTCTAGCCGTGCCTTTGTTCTTCGTAGCTATAGTTTGGCTTCTAATTTTTGCGCCTA 2342 ||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 2353 TGGCTCTAGCCTTGCCTTTGTTTTTCGTAGCTATAGTTTCGCTTCTAATTTTTGCGCCTA 2412 Query 2343 GTTAT-GATTCTCTAGCCGTTTCTTACGTAGAAGACGAAGTCCTCTCTCCTCTGT-ACAA 2400 || || |||| ||||| |||||||||||||||||||||||||| |||||||| || |||| Sbjct 2413 GT-ATTGATTTTCTAGTCGTTTCTTACGTAGAAGACGAAGTCC-CTCTCCTC-GTTACAA 2469 Query 2401 ATTAAAGAT 2409 ||||||||| Sbjct 2470 ATTAAAGAT 2478 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 119627898735 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5