BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476896
Length=2409
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77310.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2146 0.0
> AT1G77310.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: wound-responsive family protein (TAIR:AT1G21610.1);
Has 493 Blast hits to 482 proteins in 163 species: Archae -
0; Bacteria - 100; Metazoa - 172; Fungi - 66; Plants - 65;
Viruses - 7; Other Eukaryotes - 83 (source: NCBI BLink). | chr1:29051505-29056339
FORWARD LENGTH=2480
Length=2480
Score = 2146 bits (1162), Expect = 0.0
Identities = 1363/1456 (94%), Gaps = 29/1456 (2%)
Strand=Plus/Plus
Query 1 CGCACAACGTTCTAACAAAAATCATCCTCTCAGTTGCAA--TCTCTC-----CTCCT-CT 52
||| ||||||| ||||||||||| ||||||||||| ||| |||||| ||||| ||
Sbjct 3 CGCGCAACGTTGTAACAAAAATCGTCCTCTCAGTTCCAATCTCTCTCAGATTCTCCTCCT 62
Query 53 CATCA-AGATTCCCCACTCCTTTGATTCTTGT-CCAGAGTCACGTCCTCTCCGATCCGGG 110
||||| | |||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 63 CATCACA-ATTCCCCACTCCTTTGATTCTTGTCCCAGAGTCACGTCCTCTCCTATTCGGG 121
Query 111 TCTCCACAGAGTCTAACTCTGACCCGACCCGACCCAATTCACT-AATGGAGGACGAACCA 169
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 122 TCTCTACAGAGTCTAACTCTGACCCGACCCGACCCAATTCACTAAATGGAGGACGAACCA 181
Query 170 AAGCTCCCAACCGATGACGGTCCAACTTTCGGCGAGTCGTGTAAAATCTCGTCAGCGATA 229
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||
Sbjct 182 AAGCTCCCAACCGATGACGGTCCAACTTTCAACGAATCGTGTAAAATCTCGTCTGAGATA 241
Query 230 TTGACTGCCGGTGATCGGAAATTACTTAAAGTTGAACTCCTTC-AAGAGGAGACCACGCA 288
||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 242 TTGACCGCCGGTGATCGGAAATTACTTAAAGTTGAACTCC-TCAAAGAGGAGACCACGCT 300
Query 289 CGTGTCGTGGAAGAAGCTTATGGACGAGGCTTGCAAGGAAAA---CGGCTTGTTCGCTTC 345
||| |||||||||||||||||||| |||||| |||| ||||| ||||||||||| |||
Sbjct 301 CGTATCGTGGAAGAAGCTTATGGATGAGGCTAGCAAAGAAAACGGCGGCTTGTTCGTTTC 360
Query 346 GCCCCCCGAACGGCCTCCTAATGCTAACCCTAACCTCGACTTTCGCCTTGCACCGGGGGC 405
| | |||||||||| || |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 361 GGCTCCCGAACGGCTTCTTAATGCCAACCCTAACCTCGAGTTTCGCCTTGCACCGGGGGC 420
Query 406 ACAAACAGAAAATGAAATGGTGAATCAACCTCATCCTAATCGTCTTAACTCCGTTATAGC 465
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 ACAAACAGAGAATGAAATGGTGAATCAACCTCATCCTAATCGTCTTAACTCTGTTATAGC 480
Query 466 AAAGATTGAGAGACTTTATATGGGTAAAGACGGTAGTGATGGGGAAGAGTTAGATGGTGC 525
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 CAAGATTGAGAGACTTTATATGGGTAAAGACGGTAGTGATGGGGAAGAGTTAGACGGTGC 540
Query 526 TCCTGACGATGACGACTATGACACTGAAGATTCATTTATCGATGATGCTGAATTGGATGA 585
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCCTGACGATGATGACTATGACACTGAAGATTCATTTATCGATGATGCTGAATTGGATGA 600
Query 586 GTATTTTGAAGTTGACAATTCGCCAATAAAACATGATGGATTTTTTGTCAATAGAGGAAA 645
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 GTATTTTGAAGTTGATAATTCGCCAATTAAACATGATGGATTTTTTGTCAATAGAGGAAA 660
Query 646 GTTAGAACGAATTGAACCTTCAGCTACATCAAACCAGCAGCAACCAAAGAAAAGGCGAAG 705
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 661 GTTAGAACGAATTGAACCTTCAGCTACATCGAACCAGCAGCAACCAAAGAAAAGGCGAAG 720
Query 706 GAAGGAGTCAGCAAAACCTTGTGGCGACGTTGTTGATGTATCCAGAAAACAAGCCAAAAT 765
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||
Sbjct 721 GAAGGAGTCAGCAAAACCTTGTGGCGATGTTGTTGATGTATCCAGAAAACGAGCCAAGAT 780
Query 766 GGCTAAGACGGCTGGGGGAAAGGATCAATCAGCTGCTCCTGGGCCCTCTTCGAAGAAAAT 825
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 781 GGCTAAGACGGCTGGGGGAAAGGATCAATCTGCTTCTCCTGGGCCCTCTTCGAAGAAAAT 840
Query 826 TTCCAATGATTCAAAGACAGTGCAAGATTCGTTTTCCCCTTTGAAAGCTCAAAATGGCAA 885
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 841 TTCCAATGATTCAAAGACGGTGCAAGATTCGTTTTCCCCTTTGAAAGCGCAAAATGGCAA 900
Query 886 TGATTCCTTAGTTTTGGAAAATGTGAAGCATACTGATAAAGCGAATCATCAGCCAATGAA 945
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 901 TGATTCCTTAGTTTTGGAAAATGTGAAGCATACTGATAAAGCGAATCACCAGCCAATGAA 960
Query 946 TGCCACGAGTCCGAAATCAAAGGCAGCTGGATCGTCTTTCCCCCTTCATCTGAAGTGCA- 1004
||||||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 961 TGCCACGAGTCCGAAGTCAAAGGCAGCTGGATCTTCTGGCCCCCTTCATCCGAAGTGCAG 1020
Query 1005 CAAGCAAAA------ATGAACAATCTAATTCCCTTCCCGGAATATCTCGGCCAAATGATT 1058
| ||||||| |||||||||||||||||| ||| |||| |||||||||||||| ||
Sbjct 1021 C-AGCAAAAGTGTTCATGAACAATCTAATTCCCCTCCAGGAAAATCTCGGCCAAATGTTT 1079
Query 1059 CGGCAAAATCAGCAGTAGTTCGTCAGCAAGCTAACAATGGCATGCCTGACCTGGACATTG 1118
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 CGGCAAAATCAGCAGTAGTTCGTCAGCAAGTTAACAATGGCATGCCTGACCTGGACATTG 1139
Query 1119 CAACGGAAAGCGAAAA-ATCTGTTCAAATATCTAAAAAAGGCGGTTCGAATGGCAGGCCT 1177
||||||||||| |||| |||| ||||||||||||||||| ||||||| |||||| |||||
Sbjct 1140 CAACGGAAAGC-AAAACATCTATTCAAATATCTAAAAAAAGCGGTTCAAATGGCCGGCCT 1198
Query 1178 AAATCCTCAACACTTGAGAAAGCCATCAGGGAA-TTGGAGAAGGTGGTCGCTGAATCAAG 1236
|||| ||| ||||||||||||||||||| |||| ||||||||| ||||||||||||||||
Sbjct 1199 AAATACTCGACACTTGAGAAAGCCATCA-GGAATTTGGAGAAGTTGGTCGCTGAATCAAG 1257
Query 1237 GCCTCCTGCTGTCACTGAGAATCAAGATGCCGATATCTCTTCCCAAGCAGTGAAGAGGGG 1296
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GCCTCCTGCTGCCACTGAGAATCAAGATGCCGATATCTCTTCCCAAGCAGTGAAGAGGGG 1317
Query 1297 ATTGCCAGGAGATGTAAAATTGAATCTTGCTAAAGTTGCTAGAATCGCGCATGCGAGCCA 1356
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1318 ATTGCCAGGAGATGTAAAATTGCATCTTGCTAAAGTTGCTAGAATCGCGTATGCGAGCCA 1377
Query 1357 AGGAGATATATCAGGAGAGTTAATCAATCGTCTCATGAGCATTGTCGGTCATCTAATACA 1416
||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1378 AGGTGAAATATCAGGAGAGTTAATCAATCGTCTCATGGGCATTGTCGGTCATCTAATACA 1437
Query 1417 GATTAGATCACTTAAG 1432
||||||||||||||||
Sbjct 1438 GATTAGATCACTTAAG 1453
Score = 1262 bits (683), Expect = 0.0
Identities = 836/909 (92%), Gaps = 14/909 (2%)
Strand=Plus/Plus
Query 1505 GAAACAAGTCAAGAAGCTGGAACATCAGACGATTTTCAGGATGTTGGCTCTCTTGGAAAG 1564
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1580 GAAACAAATCAAGAAGCTGGAACATCAGACGATTTTCAGGATGTTGGATCTCTTGGAAAG 1639
Query 1565 CCACCTGTGAAGAAGTTTGTCATGGATGTGGCGCTGGAGGCAAAATTGTGTGATCTATAT 1624
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1640 TCACCTGTGAAGAAGTTTGTCATGGATGTGGCGCTGGAGGAAAAATTGTGTGATCTATAT 1699
Query 1625 GACGTGTTTGTTGAGGGAATGGATGAACATTCAGGTCCACAGATTAGAAAGCTTTATTCA 1684
|||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct 1700 GACGTGTTTGTTGAGGGAATGGATGAACATTCAGGTTCACAAATCAGAAAGCTTTATTCA 1759
Query 1685 GATCTAGCTGAACTCTGGCCAAATAGGTTAGTGGACAATCATGAGATCAGGCGTGCCATT 1744
||||||||| |||| ||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 1760 GATCTAGCTCAACTGTGGCCCAATAGTTTAGTTGACAATCATGAGATCAGGCGTGCCATT 1819
Query 1745 TGCCGGGAAAAGGAAAGGCGGAGAGCATTGAAAGGAAACCTTGGGAAGGAGATGGATCAA 1804
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1820 TGCCGGGAAAAGGAAAGGCGGAGAGCATTGGAAGGAAACATTGGGAAGGAGATGGATCAA 1879
Query 1805 ACGACGATAGCAAAGAAGAAAGAGACACAATTGGTCCCAAAATCAGAGGGTACTACTTAT 1864
|||| |||| ||||||||||| |||||||||||||||| ||||| ||||||| |||||||
Sbjct 1880 ACGAAGATAACAAAGAAGAAACAGACACAATTGGTCCCTAAATCTGAGGGTATTACTTAT 1939
Query 1865 CCCGACAAGGCTTCAGGTGTTGGAGTTATAGCGAGTGTTGTCCTAAGTGCAACTACCACG 1924
||||||||| |||||||||||| ||||| ||| ||||||||||||| |||||| ||||||
Sbjct 1940 CCCGACAAGACTTCAGGTGTTGAAGTTAAAGCAAGTGTTGTCCTAACTGCAACCACCACG 1999
Query 1925 TCCTTAGTGGACTGTGAAGCTGCATCAGATTCGTCCTGTGAAAGGTCAAAGAAGCAAAAT 1984
||||||||||||||| || ||||| |||| ||||||| ||||||||||||| ||||| ||
Sbjct 2000 TCCTTAGTGGACTGTCAACCTGCAGCAGACTCGTCCTTTGAAAGGTCAAAGCAGCAACAT 2059
Query 1985 GAGAAACTAAAGGGAACCTCGAGCTTAAGCAACCCTGCAGCAGAAGGAAAGACAGTCAGA 2044
|||||| ||||| |||| |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 2060 GAGAAATTAAAGCGAACTTCGAGCTTAAGCAATCCTGCAGCAGAAGGAAAGAAAGTCAGA 2119
Query 2045 AGAAAGACAGAACCAGCTGTAGAAAAAACTCAGCTGCCCGCAGAGAAACCTCTCGTTCTG 2104
|||||||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 2120 AGAAAGACAGAACCAGCTCTAGAAGAAACTCACCTGCCCGCAGAGAAACCCCTCGTTCTG 2179
Query 2105 GCCCTGAAGCAGCAGAAACATCCACAGTCCAAGGCACATAAAAAGGCACAGGTACATCCA 2164
|||||||||| ||||| ||||| | | |||||| |||||||| ||| |||||||||||||
Sbjct 2180 GCCCTGAAGCGGCAGACACATCTAAAATCCAAGACACATAAACAGGTACAGGTACATCCA 2239
Query 2165 CAGTCCAAGGCACATAAACAGGCACAAGTACATG-AACAGGCCAAGACACAAACACAGAC 2223
|||||||||||||||||||||||||| |||||| || ||||||||||||| |||
Sbjct 2240 CAGTCCAAGGCACATAAACAGGCACAGGTACATCCAA-AGGCCAAGACACA------GAC 2292
Query 2224 TCCTCCAGACCTGAACCTGCCAAGTTAGGTACTCCAGCTTAG-ttttttttGTCAAAGTC 2282
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 2293 TCCTCCAGACCTGAACCTGCCAAGTTAGGTACTACAGCTTAGATTTTTTTTCTCAAAGTC 2352
Query 2283 TGGCTCTAGCCGTGCCTTTGTTCTTCGTAGCTATAGTTTGGCTTCTAATTTTTGCGCCTA 2342
||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 2353 TGGCTCTAGCCTTGCCTTTGTTTTTCGTAGCTATAGTTTCGCTTCTAATTTTTGCGCCTA 2412
Query 2343 GTTAT-GATTCTCTAGCCGTTTCTTACGTAGAAGACGAAGTCCTCTCTCCTCTGT-ACAA 2400
|| || |||| ||||| |||||||||||||||||||||||||| |||||||| || ||||
Sbjct 2413 GT-ATTGATTTTCTAGTCGTTTCTTACGTAGAAGACGAAGTCC-CTCTCCTC-GTTACAA 2469
Query 2401 ATTAAAGAT 2409
|||||||||
Sbjct 2470 ATTAAAGAT 2478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119627898735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5