BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476898
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77330.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1749 0.0
> AT1G77330.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr1:29062990-29064537
REVERSE LENGTH=1239
Length=1239
Score = 1749 bits (947), Expect = 0.0
Identities = 1108/1182 (94%), Gaps = 26/1182 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTTTCTCTCTTTGTGGATCTGAAATGGCGATTCCTGTTATCGATTTCTCCAAGCT 60
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 63 TCTCTCTCTCTCTCTTTGCGGATCTGAAATGGCGATTCCTGTTATCGATTTCTCCAAACT 122
Query 61 CAATGGTGAAGAAAGGGAGAAGACACTGTCTGAAATAGCTAGAGCTTGTGAAGAATGGGG 120
||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 123 CAATGGTGAAGAAAGAGAGAAGACACTGTCTGAAATCGCTAGAGCTTGCGAAGAGTGGGG 182
Query 121 ATTTTTTCAGCTGGTGAACCATGGTATTCCATTGGAGCTTCTGAATAAGGTGAAGAAACT 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 183 ATTTTTTCAGCTGGTGAACCATGGTATTCCATTGGAGCTTCTAAATAAGGTGAAGAAGCT 242
Query 181 GAGCTCAGATTGCTACAAAACAGAGAGAGAAGAAGCATTCAAGACCTCTAATCCCGTGAA 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 243 GAGCTCAGATTGCTACAAAACAGAGAGAGAAGAAGCATTCAAGACTTCTAATCCCGTGAA 302
Query 241 GTTACTCAACGAATTGGTTCAAAAGAACTCTGGCGAGAAACTCGAAAACGTTGACTGGGA 300
||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 303 GTTGCTCAACGAATTGGTTCAAAAGAACTCTGGCGAGAAGCTAGAAAACGTGGACTGGGA 362
Query 301 AGATGTCTTCACTCTCTTGGACCATAACCAAAACGAATGGCCATCCAACACTAAAGAGAC 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 363 AGATGTCTTCACTCTCTTGGACCATAACCAAAACGAATGGCCATCCAACATTAAAGAGAC 422
Query 361 GATGGGGGAATACAGAGAAGAAGTGAGGAAGCTAGCGAGCAAAATGATGGAAGTGATGGA 420
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 423 TATGGGAGAATACAGAGAAGAAGTGAGGAAGCTAGCGAGCAAGATGATGGAAGTGATGGA 482
Query 421 TGAGAATTTGGGTTTGCCTAAAGGTTACATTAAGAAAGCTTTTAATGAAGGAATGGAAGA 480
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 483 TGAGAATTTGGGTTTGCCTAAAGGTTACATAAAGAAAGCTTTCAATGAAGGAATGGAAGA 542
Query 481 TGGAGAAGAGACAGCTTTCTTTGGGACTAAAGTCAGCCATTACCCACCTTGCCCTCATCC 540
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 543 TGGAGAAGAGACAGCTTTCTTTGGGACTAAAGTCAGCCATTACCCTCCTTGTCCTCATCC 602
Query 541 GGAGCTCGTCAATGGCCTTCGAGCTCATACTGATGCAGGAGGAGTCGTTTTG-TTGTTCC 599
||||| ||||||||||||||||||||||||||||||||||| ||||||||| || ||||
Sbjct 603 TGAGCTAGTCAATGGCCTTCGAGCTCATACTGATGCAGGAGGTGTCGTTTTGCTT-TTCC 661
Query 600 AAGACGATGAATATGATGGCCTTCAAGTCTTGAAAGGCGGCGAGTGGATCGATGTTCAGC 659
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 662 AAGACGATGAATATGATGGCCTTCAGGTCTTGAAAGACGGCGAGTGGATCGATGTTCAGC 721
Query 660 CGCTACCTAACGCTATTGTTATCAACACTGGTGATCAGATTGAAGTTCTTAGCAACGGAA 719
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CTCTACCTAATGCCATTGTTATCAACACTGGTGATCAGATTGAAGTTCTTAGCAACGGAA 781
Query 720 GGTACAAAAGCGCGTGGCACAGGGTGTTGGCGAGGGAGGAAGGAAACCGAAGGTCCATAG 779
||||||| || |||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 782 GGTACAAGAGTGCGTGGCACAGGGTGTTGGCGAGGGAGGAAGGAAACAGAAGGTCTATAG 841
Query 780 CTTCCTTCTACAATCCGTCGTACAAGGCGGCGATTGGGCCAGCCGCGGTGGCGGAAGAGG 839
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 842 CTTCCTTCTACAATCCGTCGTACAAGGCGGCGATAGGGCCAGCCGCGGTGGCGGAAGAGG 901
Query 840 AAGGAAGTGAGAAGAAGTATCCAAAGTTTGTGTTTGGAGATTACATGGATGTCTATGCAA 899
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 902 AAGGAAGTGAGAAGAAGTATCCAAAGTTTGTGTTTGGAGATTACATGGATGTTTATGCAA 961
Query 900 ACCAGAAGTTCATGCCTAAGGAGCCTCGTTTTCTAGCTGTAAAGTCTCTCTAAATGT--T 957
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 962 ACCAGAAGTTCATGCCTAAAGAGCCTCGTTTTCTAGCTGTAAAGTCTCTCTAAATGTACT 1021
Query 958 -TTT-A----------CAGTATTATCACTGTTTTATCTACCCCCCACATTATGTATTTTC 1005
||| | ||||| |||||||||||||||||| ||| | ||||||||||||
Sbjct 1022 ATTTTATTTATTTTTACAGTACTATCACTGTTTTATCTACACCC-A--TTATGTATTTTC 1078
Query 1006 TCTTAAGTTATAAATGCCAAATTATATAGTTAAAAATTTGGCATCTGTTCTTCTGGCTTT 1065
||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 1079 TCTTAAGCTATAAATGCCAAATTATATAGTTAAAAATTTGGCATCTGCTCTCCAGGCTTT 1138
Query 1066 ATGATTT----GtttttttttgtttttCCATGTGATGTATGAATCTTTGTTGTG--ACCT 1119
|| |||| ||||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 1139 AT-ATTTTTTTGTTTTTTTTTGTTTTGCCATGTGATGTATGAATCTTTCTTGTGTGACCT 1197
Query 1120 ATGTTCTTAGTTTTTGAATACGAATGTGTGTACCTTTTTCTT 1161
|||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1198 ATGTTCTTAGTTTTTGAATATAAATGTGTGTGCCTTTTTCTT 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56977618575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5