BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg476899

Length=1149
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G77340.1 | Symbols:  | Pentatricopeptide repeat (PPR) superf...   595    3e-169


> AT1G77340.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily 
protein | chr1:29068343-29069828 REVERSE LENGTH=1486
Length=1486

 Score =  595 bits (322),  Expect = 3e-169
 Identities = 359/377 (95%), Gaps = 2/377 (1%)
 Strand=Plus/Plus

Query  578   ATGACAACTGTTGTCCTAATGTTCGTACATACACAGTGCTTATAGATGCTTTGTGTGGAT  637
             ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  758   ATGACAATTGTTGTCCTAATGTTCGAACATACACAGTGCTTATAGATGCTTTGTGTGGAT  817

Query  638   CAGGGA-AGAAGTCAGAAGCTCTGAATTTGTTTAAGCAGATGTCAGAGAGTGGCATTAAG  696
             || ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  818   CA-GGACAGAAGTCAGAAGCTATGAATTTGTTTAAGCAGATGTCAGAGAGTGGCATTAAG  876

Query  697   CCTGATGTTTATATGTATACTGTGCTTATTCAGAGCTTTTGTAGTGGAGATACACTCGAT  756
             ||||||| || |||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  877   CCTGATGATTGTATGTATACTGTGCTTATTCAGAGTTTTTGTAGTGGAGATACACTTGAT  936

Query  757   GAAGCTAGTGGGTTGCTAGATCATATGTTTGAAAATGGGTTGATGCCAAATTTTATTACA  816
             ||||| ||||| |||||||| |||||||| || |||||||||||||||||| ||||||||
Sbjct  937   GAAGCAAGTGGATTGCTAGAACATATGTTGGAGAATGGGTTGATGCCAAATGTTATTACA  996

Query  817   TACAATGCATTGATCAAAGGGTTTTGTAAGAAGAATGTGCACAAAGCAATGGGACTGCTT  876
             |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  997   TACAATGCATTGATCAAAGGTTTTTGTAAGAAGAATGTGCACAAAGCAATGGGACTGCTT  1056

Query  877   AGTAAGATGCTAGAGCAAAATTTGGTTCCAGACTTGATAACTTATAATACATTGATTGCT  936
             ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct  1057  AGTAAGATGCTAGAGCAGAATTTGGTTCCAGACTTGATAACTTATAATACATTGATCGCT  1116

Query  937   GGACAGTGTAGCTCTGG  953
             |||||||||||||||||
Sbjct  1117  GGACAGTGTAGCTCTGG  1133


 Score =  348 bits (188),  Expect = 8e-95
 Identities = 242/267 (91%), Gaps = 8/267 (3%)
 Strand=Plus/Plus

Query  234  CTTTGAGATTAAATACATGCTTAGTCCTAAATGCTATAATACTCTGTTGAGTTCATT-GT  292
            ||| ||||||||||| |  |||| |||||||||||| |||| ||||||||||||||| | 
Sbjct  333  CTTCGAGATTAAATATAAACTTACTCCTAAATGCTACAATAATCTGTTGAGTTCATTAG-  391

Query  293  CTAGATTTGGATTAGTCGATGAAATGAAGAGACATTATACAGAAATGTTGGACGATTTGG  352
            ||||||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||
Sbjct  392  CTAGATTTGGATTAGTCGAAGAAATGAAGAGACTTTATACTGAAATGTTGGAGGATTTGG  451

Query  353  TTTCTCCAGACATTTACACGTTTAACACATTGGTTAATGGGTATTGTATGCTTGGATATG  412
            ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  452  TTTCTCCAGACATATACACGTTTAACACATTGGTTAATGGGTATTGTAAGCTTGGATATG  511

Query  413  TAGTAGAAGCAAAGCAGTATGTGAGTAGGCTTATTCAGGCTGGTT-TGACTCCTGATTAT  471
            |||||||||||||||||||||||| | |||||||||| ||||| | ||| ||||||||||
Sbjct  512  TAGTAGAAGCAAAGCAGTATGTGACTTGGCTTATTCAAGCTGGATGTGA-TCCTGATTAT  570

Query  472  TTCACATATATATACTTCTTTTATTAC  498
            ||||||||||    |||||||||||||
Sbjct  571  TTCACATATA----CTTCTTTTATTAC  593


 Score =  158 bits (85),  Expect = 1e-37
 Identities = 91/94 (97%), Gaps = 0/94 (0%)
 Strand=Plus/Plus

Query  71   TCATGTCTCTTCTCTGTTTTCACTCAATCTTGATCCTCAGACAGCTCTCACTTTCTCCGA  130
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct  84   TCATGTCTCTTCTCTGTTTTCACTCAATCTTGATCCTCAGACAGCTCTCAGTTTCTCGGA  143

Query  131  TTGGATCTCTCGGATACCAAAATTCAAGCACAAC  164
            ||||||||||||||||||||| ||||||||||||
Sbjct  144  TTGGATCTCTCGGATACCAAACTTCAAGCACAAC  177


 Score =  130 bits (70),  Expect = 3e-29
 Identities = 79/83 (95%), Gaps = 2/83 (2%)
 Strand=Plus/Plus

Query  953   GAGGAATAACTG-TAAGTGAGAAGATTTGTAATGGTCTTCTTAGATGTTACTATAAGCTG  1011
             |||||||| | | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1208  GAGGAATATC-GTTAAGTGAGAAGATTTGTAATGGTCTTCTTAGATGTTACTACAAGCTG  1266

Query  1012  CAAAAGTATGAGGAAGCTGCAAA  1034
             |||||||||||||||||||||||
Sbjct  1267  CAAAAGTATGAGGAAGCTGCAAA  1289


 Score =  117 bits (63),  Expect = 2e-25
 Identities = 69/72 (96%), Gaps = 0/72 (0%)
 Strand=Plus/Plus

Query  500  GGTTTTTAAGGAGATGTCTCAGAACGGTTGCCATAGAAATGAGGTTTCCTACACTCAACT  559
            |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct  633  GGTTTTTAAGGAGATGACTCAGAACGGTTGCCATAGAAATGAGGTTTCTTACACTCAGCT  692

Query  560  TATATATGGTCT  571
            ||||||||||||
Sbjct  693  TATATATGGTCT  704


 Score = 58.4 bits (31),  Expect = 2e-07
 Identities = 31/31 (100%), Gaps = 0/31 (0%)
 Strand=Plus/Plus

Query  42  CAAATTGGCAGAACAATCCATCTCTAAAATC  72
           |||||||||||||||||||||||||||||||
Sbjct  30  CAAATTGGCAGAACAATCCATCTCTAAAATC  60



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56375212035


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5