BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476900
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2268 0.0
> AT1G77360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:29071983-29073536 REVERSE LENGTH=1554
Length=1554
Score = 2268 bits (1228), Expect = 0.0
Identities = 1370/1441 (95%), Gaps = 0/1441 (0%)
Strand=Plus/Plus
Query 9 GATCAGAATTCTCAATCGTCAATCCAGATTGTGTTCTAAGAGTTTTCTGTCTGCGAGGCT 68
|||||||||| ||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 114 GATCAGAATTATCAATCGTCAATCCAGATTCTGCTGTAAGAGTTTTCTGTCTGCGAGGCT 173
Query 69 GTATAGTTCAAGCGAACAAGTGAGAGATGTTGCAGATGTGGCCAAGAACATATCTAAAGT 128
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 174 GTATAGTTCAAGCGAACAAGTGAGAGATGTTGCGGATGTGGCGAAGAACATATCTAAAGT 233
Query 129 ATTGATGTCTTCTCCACAACTGGTGATTGACTCGGCTTTAGATCAAAGTGGGTTAAGGGT 188
||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 234 ATTGATGTCTTCTCCGCAATTGGTGCTTGACTCGGCTTTAGATCAAAGTGGGTTAAGGGT 293
Query 189 TTCACCAGAAGTTGTAGAAGATGTTTTATATAGATTCAGGAATGCTGGTTTGTTGGCATA 248
||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 294 TTCACAAGAAGTTGTAGAAGATGTTTTAAATAGATTCAGGAATGCTGGTTTGTTGACATA 353
Query 249 CAGGTTCTTCCAATGGTCTGAGAAGCAACGTCATTACGAGCATAGTGTTCGTGCCTACCA 308
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 354 CAGGTTCTTCCAATGGTCTGAGAAGCAACGGCATTACGAGCATAGTGTTCGTGCGTACCA 413
Query 309 CATGATGATTGAGTCTACGGCAAAGATTAGGCAGTACAAGCTCATGTGGGATCTCATCAA 368
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 414 CATGATGATTGAGTCTACGGCGAAGATAAGGCAGTACAAGCTCATGTGGGATCTTATCAA 473
Query 369 TGCAATGAGGAAGAAGGAGATGCTAAACGTCGAGACTTTTTGTATCGTAATGAGGAAGTA 428
|||||||||||||||| |||||||||| || ||||||||||||||||| |||||||||||
Sbjct 474 TGCAATGAGGAAGAAGAAGATGCTAAATGTAGAGACTTTTTGTATCGTGATGAGGAAGTA 533
Query 429 CGCCAGGGCGCAGAAAGTGGATGAGGCGATTTACGCGTTTAATGTGATGGAGAAGTATGA 488
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TGCGAGGGCGCAGAAAGTGGATGAGGCGATTTACGCGTTTAATGTGATGGAGAAGTATGA 593
Query 489 TTTACCGCCAAATCTTGTGGCGTTCAACGGGTTGCTGAGTGCGTTGTGTAAATCCAAGAA 548
||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 594 TTTGCCGCCGAATCTTGTGGCGTTCAACGGGTTGTTGAGTGCGTTGTGTAAATCCAAGAA 653
Query 549 TGTGAGGAAATCACAGGAAATTTTCGAGAATATGAGGGATCGGTTTACGCCTGACTCTAA 608
|||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||| ||
Sbjct 654 TGTGAGGAAAGCACAGGAAGTTTTCGAAAATATGAGGGATCGCTTTACGCCTGACTCCAA 713
Query 609 AACCTATAGCATATTGCTTGAAGGATGGGGGAAAGAACCCAACTTGCCCAAGGCAAGAGA 668
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 714 AACGTATAGCATATTGCTTGAGGGATGGGGGAAAGAACCCAACTTGCCCAAGGCAAGAGA 773
Query 669 GGTTTTTCGGGAAATGGTTGATGCGGGTTCTCTTCCGGATATAGTGACCTATAGTATAAT 728
||| || ||||||||| |||||||||||| || ||||||||||||||| |||||||||||
Sbjct 774 GGTCTTCCGGGAAATGATTGATGCGGGTTGTCATCCGGATATAGTGACGTATAGTATAAT 833
Query 729 GGTTGACATACTTTGTAAAGCTGGAAGAGTTGATGAAGCTCTTGGCATTGTGAGGAGCAT 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GGTTGACATACTTTGTAAAGCTGGAAGAGTTGATGAAGCTCTTGGCATTGTGAGGAGCAT 893
Query 789 GGATCCAAGCATTTGCAAGCCGACAACTTTTATCTATAGTGTGCTTGTACATACTTATGG 848
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 894 GGATCCAAGCATTTGCAAGCCGACCACTTTTATCTATAGTGTGCTTGTACATACTTATGG 953
Query 849 AACTGAGAACCGGCTTGAAGAGGCGGTTGATACGTTCCTCGAGATGGAAAGAAGTGGAAT 908
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 954 AACTGAGAACCGGCTTGAAGAGGCGGTTGATACTTTCCTCGAGATGGAAAGAAGTGGAAT 1013
Query 909 GAAGGCCGATGTAGCGGTTTTCAATTCATTGATTGGTGCATTTTGCAAAACAAATAGGAT 968
||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1014 GAAAGCCGATGTAGCAGTTTTCAATTCATTGATCGGTGCATTTTGCAAAGCAAATAGGAT 1073
Query 969 GAAGAATGTGTATAGGGTTTTGAAAGAAATGAAGAGTAAAGGTGTGACGCCTAACTCCAA 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GAAGAATGTGTATAGGGTTTTGAAAGAAATGAAGAGTAAAGGTGTGACGCCTAACTCCAA 1133
Query 1029 GTCATGTAACATTATTCTACGCCATCTAATAGATCGAGGGGAGAAAGACGAAGCTTATAA 1088
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | |
Sbjct 1134 GTCATGTAACATCATTCTACGCCATCTAATAGAACGAGGGGAGAAAGACGAAGCTTTTGA 1193
Query 1089 TGTCTTTAGGAAGATGATTAAAGTGTGCGAACCAGATGCAGACACATACACTATGATGAT 1148
||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||
Sbjct 1194 TGTCTTTAGGAAGATGATTAAAGTGTGTGAACCAGATGCAGACACTTACACGATGGTGAT 1253
Query 1149 AAAGATGTTTTGTGAGAAGAAAGAGATGGAGACCGCGGATAAAGTGTGGAAGTACATGAG 1208
|||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1254 CAAGATGTTTTGTGAAAAGAAAGAGATGGAGACAGCGGATAAAGTGTGGAAATACATGAG 1313
Query 1209 GAAGAAAGGGGTGTTCCCTAGTATGCACACATTCTCAGTTCTTATTAATGGGTTGGGCGA 1268
||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 1314 GAAGAAAGGGGTGTTCCCTAGTATGCATACATTCTCGGTTCTTATTAATGGGTTGTGCGA 1373
Query 1269 GGAGCCTAACACTCAAAAAGCTTGTGTTTTGTTAGAGGAGATGATCGAGATGGGGATTCG 1328
||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GGAGCGTACCACTCAGAAAGCTTGTGTTTTGTTAGAGGAGATGATCGAGATGGGGATTCG 1433
Query 1329 ACCATCGGGTGCGACATTTGGTAGATTAAGACAGCTGCTTCTCAAAGAAGATAGAGAAGA 1388
||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1434 ACCATCGGGTGTAACGTTTGGTAGATTAAGACAGCTGCTTATCAAAGAAGAGAGAGAAGA 1493
Query 1389 TGTGCTTAAGTTTCTTAATGAGAAGATGAACGTTTTGGTCAATGAGCCTTTGTGTGATTG 1448
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1494 TGTGCTCAAGTTCCTTAATGAGAAGATGAACGTTTTGGTCAATGAGCCGTTGTGTGATTG 1553
Query 1449 A 1449
|
Sbjct 1554 A 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5