BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476902
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77380.1 | Symbols: AAP3, ATAAP3 | amino acid permease 3 | c... 2763 0.0
AT5G09220.1 | Symbols: AAP2 | amino acid permease 2 | chr5:2866... 486 3e-136
> AT1G77380.1 | Symbols: AAP3, ATAAP3 | amino acid permease 3 |
chr1:29074888-29077390 REVERSE LENGTH=1882
Length=1882
Score = 2763 bits (1496), Expect = 0.0
Identities = 1747/1862 (94%), Gaps = 41/1862 (2%)
Strand=Plus/Plus
Query 1 AGACAGTTCTTCAACAAAGGCATTAAACATTTCCCTTACCTTCTAAAGGCCAACTCTTTC 60
||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 8 AGACAGTTCTTTAACAAAGTCATTAAACATTTCCCTTACCTTCTAAAGATCAACTCTTTC 67
Query 61 AAACACTTACTTTGCATGTAACTTC----A-T------------aaaaaaacagagcaaa 103
||||||||||| ||||||||||||| | | ||||||||||||||||
Sbjct 68 AAACACTTACTCTGCATGTAACTTCATAGATTGAACGAAGAACCAAAAAAACAGAGCAAA 127
Query 104 aaaaacaaaaaaTGGTTCAACTCCACCAAACAGTTCTCGCCGTCGATATGCCACAAACCG 163
| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 128 ACAAACAAAAGATGGTTCAAAACCACCAAACAGTTCTCGCCGTCGATATGCCACAAACCG 187
Query 164 GCGGCTCTAAGTACTTGGACGACGAC-GGAAAAGTCAAAAGAACTGGGAGTGTTTGGACG 222
||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 188 GCGGCTCCAAGTACTTGGACGACGACGGGAAAA-ACAAAAGAACTGGGAGTGTTTGGACG 246
Query 223 GCGAGTGCACACATAATAACGGCGGTGATAGGTTCGGGAGTTTTGTCACTGGCGTGGGCT 282
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 247 GCGAGTGCACACATAATAACGGCAGTGATAGGTTCGGGAGTTTTGTCACTAGCGTGGGCT 306
Query 283 ACGGCGCAGCTAGGTTGGCTAGCCGGACCAGTGGTGATGTTGCTCTTCTCTGCAGTCACT 342
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 307 ACGGCGCAGCTAGGTTGGCTCGCCGGACCGGTGGTGATGTTGCTCTTCTCTGCCGTCACT 366
Query 343 TATTTCACTTCTTCTCTTCTTGCGGCATGTTACCGCTCTGGCAACCCTATCTCCGGCAAG 402
||||||||||||||||||||||| || ||||||||||| ||| |||||||||||||||||
Sbjct 367 TATTTCACTTCTTCTCTTCTTGCTGCTTGTTACCGCTCCGGCGACCCTATCTCCGGCAAG 426
Query 403 AGGAACTACACTTATATGGATGCTGTCCGATCTAATCTCGGTGGCGTGAAGGTGACGCTA 462
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 427 AGGAACTACACTTATATGGATGCTGTCCGATCAAATCTCGGTGGCGTGAAGGTGACGCTA 486
Query 463 TGTGGGATTGTTCAGTATCTTAATATCTTTGGTGTTGCAATAGGCTACACAATTGCTTCA 522
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 487 TGTGGGATTGTTCAGTATCTTAATATCTTTGGTGTTGCTATTGGCTACACAATTGCTTCA 546
Query 523 GCTATAAGCATGATGGCAATAAAGAGATCAAACTGTTTCCACAAGAGTGGAGGGAAAGAT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GCTATAAGCATGATGGCAATAAAGAGATCAAACTGTTTCCACAAGAGTGGAGGGAAAGAT 606
Query 583 CCATGTCACATGAACAGTAATCCTTACATGATAGCTTTTGGATTAGTCCAGATTCTATTC 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 CCATGTCACATGAACAGTAATCCTTACATGATAGCTTTTGGATTAGTCCAGATTCTATTC 666
Query 643 TCTCAGATTCCAGATTTTGATCAACTTTGGTGGCTCTCAATCCTCGCCGCCGTAATGTCC 702
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 667 TCTCAGATTCCAGATTTTGATCAACTTTGGTGGCTCTCAATCCTCGCCGCCGTTATGTCC 726
Query 703 TTCACTTATTCCTCTGCCGGTCTCGCCCTAGGCATAGCCCAAGTTGTTGTAAATGGGAAG 762
|||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 727 TTCACTTATTCCTCAGCCGGTCTCGCCCTCGGCATAGCCCAAGTTGTCGTTAATGGGAAG 786
Query 763 GTGAAGGGAAGTCTCACTGGGATTAGCATAGGAGCAGTAACAGAGACACAGAAGATATGG 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GTGAAGGGAAGTCTCACTGGGATTAGCATAGGAGCAGTAACAGAGACACAGAAGATATGG 846
Query 823 AGAACCTTCCAAGCTCTTGGAGACATTGCTTTTGCTTACTCTTACTCCATCATTCTCATC 882
|| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 847 AGGACCTTTCAAGCTCTTGGAGACATTGCTTTTGCTTACTCTTACTCCATTATCCTCATC 906
Query 883 GAGATTCAGGACACAGTGAAGTCACCACCATCAGAAGAAAAAACGATGAAGAAGCCAACA 942
|||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 907 GAGATTCAGGACACAGTGAAGTCACCACCATCAGAAGAGAAGACGATGAAGAAGGCAACA 966
Query 943 CTTGTGAGCGTCAGTGTAACGACTATGTTCTACATGTTGTGTGGATGTATGGGTTATGCA 1002
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 967 CTTGTGAGCGTCAGTGTAACGACTATGTTCTATATGTTGTGTGGATGTATGGGATATGCA 1026
Query 1003 GCCTTTGGAGACCTATCTCCGGGAAATCTCTTAACCGGTTTTGGGTTTTATAATCCTTAT 1062
|||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1027 GCCTTTGGAGACTTGTCTCCGGGAAATCTCTTAACCGGTTTCGGGTTTTATAATCCTTAT 1086
Query 1063 TGGCTTCTTGACATTGCAAATGCAGCCATTGTGATTCACCTTATTGGTGCATACCAAGTC 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 TGGCTTCTTGACATTGCAAATGCAGCCATTGTGATTCACCTTATTGGTGCATACCAAGTC 1146
Query 1123 TATTGCCAACCTCTGTTTGCTTTCATCGAGAAGCAAGCTTCCATTCGATTCCCTGATAGT 1182
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1147 TATTGCCAACCTCTGTTTGCTTTCATCGAGAAGCAAGCTTCCATTCAATTCCCTGATAGT 1206
Query 1183 GAGTTCATTGCAAGAGATATCAAAATTCCAATTCCAGGTTTCAAGCATCTCCACTTGAAT 1242
||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||
Sbjct 1207 GAGTTCATTGCAAAAGATATCAAAATTCCAATTCCTGGTTTCAAGCCTCTCCGCTTGAAT 1266
Query 1243 GTCTTCAGGTTGATATGGGGGACAGTGTTTGTGATCATAACGACAGTTATCTCAATGCTT 1302
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GTCTTCAGGTTGATATGGAGGACAGTGTTTGTGATCATAACGACAGTTATCTCAATGCTT 1326
Query 1303 CTTCCGTTTTTCAACGACGTTGTGGGTCTGCTCGGGGCACTCGGGTTTTGGCCATTGACA 1362
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1327 CTTCCGTTTTTCAACGACGTTGTGGGTCTGCTCGGGGCACTAGGGTTTTGGCCATTGACG 1386
Query 1363 GTGTATTTTCCAGTGGAAATGTACATTGCGCAGAAGAAGATACCTAGATGGAGCACCAGA 1422
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1387 GTGTATTTTCCAGTGGAAATGTACATCGCGCAGAAGAAGATACCTAGATGGAGCACCAGA 1446
Query 1423 TGGGTTTGCCTTCAAGTCTTCAGCTCAGGGTGTTTAGTAATTAGCATTGCTGCAGCTGCA 1482
||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 1447 TGGGTTTGCCTTCAAGTCTTCAGCTTAGGGTGTCTAGTAGTTAGCATTGCTGCAGCTGCA 1506
Query 1483 GGGTCCATAGCTGGGGTACTTCTTGATCTAAAGTCCTACAAGCCATTTCGAAGCGAATAC 1542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 GGGTCCATAGCTGGAGTACTTCTTGATCTAAAGTCCTACAAGCCATTTCGAAGCGAATAC 1566
Query 1543 TGATCAACTTGAG-ACTTTGCCATTTCGAAGCGATGACTGAGTCAGTTTTAAACACAAAC 1601
|||||||||||| | | |||| ||| ||||||||||| ||||||||||||||||||
Sbjct 1567 TGATCAACTTGAATAGTA-GCCAATTCAAAGCGATGACTAAGTCAGTTTTAAACACAATG 1625
Query 1602 AATATATCAAAAACGGTCAAGAGAACCAATGA-CAATGAATTTGGGAATTTTGATCAGCT 1660
|| |||||| ||| |||||||||||||| || | |||||||||||||||||||||||||
Sbjct 1626 GATTTATCAAGAACAGTCAAGAGAACCAA-GAACCATGAATTTGGGAATTTTGATCAGCT 1684
Query 1661 TGTTTTTGATATAGATAAAAGCAATAATGCTGTTAGTTCTTCTCT------------GTA 1708
| ||||| ||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1685 TTTTTTT-ATATAGATAGAAGCAATAATGCTGTTAGTTCTTCTCTATAATCTTCTCTGTA 1743
Query 1709 CCCTGAAGGCAAGAATTGTAGTCCTAATGAGTAAATCTTCGATTAATTT-----TCATGT 1763
||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1744 CCCTGAAGGCAAGAATTGTAGTCCTAATGAGTAAATCTTCGATTAATGACAGAGTCATGT 1803
Query 1764 GCTGCAAAAGAATCATGAACTGGCAGCATAATAGTATATTACCATTGTGGTAAAATTGCA 1823
||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 1804 GCTGCAACAGAATCATGAACTAGCACCATAATAGTATATTACCATTGTGGTAAAATTTCA 1863
Query 1824 AT 1825
||
Sbjct 1864 AT 1865
> AT5G09220.1 | Symbols: AAP2 | amino acid permease 2 | chr5:2866252-2869054
FORWARD LENGTH=1794
Length=1794
Score = 486 bits (263), Expect = 3e-136
Identities = 955/1278 (75%), Gaps = 91/1278 (7%)
Strand=Plus/Plus
Query 197 TCAAAAGAACTGGGAGTGTTTGGACGGCGAGTGCACACATAATAACGGCGGTGATAGGTT 256
||||||||||||||| ||||||||| ||||| || || |||||||| ||||| || || |
Sbjct 252 TCAAAAGAACTGGGACTGTTTGGACCGCGAGCGCTCATATAATAACTGCGGTTATCGGAT 311
Query 257 CGGGAGTTTTGTCACTGGCGTGGGCTACGGCGCAGCTAGGTTGGCTAGCCGGACCAG-TG 315
| || ||||||||| |||||||||| | || ||||| || ||| | || || || | |
Sbjct 312 CCGGCGTTTTGTCATTGGCGTGGGCGATTGCACAGCTCGGATGGATCGCTGGCCCTGCT- 370
Query 316 GTGATGTTGCTCTTCTCTGC-AGTCACTTATTTCACT--TCTTCTCTTCTT-GCGGCATG 371
|||||| | | |||||| | || || | ||| ||| || | |||||| ||| | ||
Sbjct 371 GTGATGCTATTGTTCTCT-CTTGTTAC-TCTTT-ACTCCTCCACACTTCTTAGCGAC-TG 426
Query 372 TTACCGCTCTGGCAACCCTA-TCTCCGGCAAGAGGAACTACACTTATATGGATGCTGTCC 430
||| | | ||| | | | | || |||||||| ||||||||||| |||||||| || |
Sbjct 427 CTACAGAACCGGCGATGC-AGTGTCTGGCAAGAGAAACTACACTTACATGGATGCCGTTC 485
Query 431 GATCTAA-TCTCGGTGGCG-TGAAGGTGACGCTATGTGGGATTG-TTCAGTATCTT-AAT 486
|||| || ||||||||| | | ||| | | | | |||||| ||| |||| || ||| |||
Sbjct 486 GATC-AATTCTCGGTGG-GTTCAAGTTCAAGATTTGTGGG-TTGATTCAATA-CTTGAAT 541
Query 487 ATCTTTGGTGTTGCAATAGGCTACACAATTGCTTCAGCTATAAGCATGATGGCAATAAAG 546
|||||||| | ||||| || ||||| || || | | |||||||||||||| || |||
Sbjct 542 CTCTTTGGTATCGCAATTGGATACACGATAGCAGCTTCCATAAGCATGATGGCGATCAAG 601
Query 547 AGATCAAACTGTTTCCACAAGAGTGGAGGGAAAGATCCATGTCACATGAACAGTAATCCT 606
||||| ||||| ||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct 602 AGATCCAACTGCTTCCACAAGAGTGGAGGAAAAGACCCATGTCACATGTCCAGTAATCCT 661
Query 607 TACATGATAGCT-TTTGGATTAGT-CCAGA-TTC-TATTCTCTCAGATTCCAGATTTTGA 662
|||||||| | | ||||| | || |||| || | |||||||| |||| ||||| ||
Sbjct 662 TACATGATCG-TATTTGG--T-GTGGCAGAGATCTTGCTCTCTCAGGTTCCTGATTTCGA 717
Query 663 TCA-ACTTTGGTGGCTCTCAATCCTCGCCGCCGTAATGTCCTTCACTTATTCCTCTGCC- 720
||| | |||||||| |||| || | || || || |||||||||||||| |||||||
Sbjct 718 TCAGA-TTTGGTGGATCTCCATTGTTGCAGCTGTTATGTCCTTCACTTA---CTCTGCCA 773
Query 721 --GGTCTCGCCCTAGGCATAGCCCAAGTTGTTGTAAATGGGAAG--GTGAAGGGAAGTCT 776
||||| || || || || | ||||||| | ||| || || | || ||||||||
Sbjct 774 TTGGTCTAGCTCTTGGAATCGTTCAAGTTGCAGCGAAT-GG-AGTTTTCAAAGGAAGTCT 831
Query 777 CACTGGGATTAGCATAGGAGCAGTAACAGAGACACAGAAGATATGGAGAACCTTCCAAGC 836
|||||| || ||||| ||| |||| || | |||||||||||||||||||||||||||||
Sbjct 832 CACTGGAATAAGCATCGGAACAGTGACTCAAACACAGAAGATATGGAGAACCTTCCAAGC 891
Query 837 TCTTGGAGACATTGCTTTTGCTTACTCTTACTCCATCATTCTCATCGAGATTCAGGACAC 896
|||||||||||||| ||||| ||||| ||||| | | || |||||||||||||| ||
Sbjct 892 ACTTGGAGACATTGCCTTTGCGTACTCATACTCTGTTGTCCTAATCGAGATTCAGGATAC 951
Query 897 AGTGAAG-TCACCACCATCAGAAGAAAAAACGATGAAGAA-GCCAACACTTGTGAGCGTC 954
|| ||| || ||||| | ||| |||||||||||||| || |||| | || |
Sbjct 952 TGT-AAGATCCCCACCGGCGGAATCGAAAACGATGAAGAAAGC-AACAAAAATCAGTATT 1009
Query 955 AGT-GTAACGACTATGTTCTACATGTTGTGTGGATGTATGGGTTATGCAGCCTTTGGAGA 1013
| || || ||||| ||||||||| | ||||| | ||||||||||| || ||||||||
Sbjct 1010 -GCCGTCACAACTATCTTCTACATGCTATGTGGCTCAATGGGTTATGCCGCTTTTGGAGA 1068
Query 1014 C-CTATCTCCGGGAAATCTCTTAACCGGTTTTGGGTTTTATAATCC-TTATTGGCTTCTT 1071
| | | |||||||| ||| | ||||||||||| || || || || || |||||| |||
Sbjct 1069 TGC-AGCACCGGGAAACCTCCTCACCGGTTTTGGATTCTACAACCCGTT-TTGGCTCCTT 1126
Query 1072 GACATTGCAAATGCAGCCATTGT-GATTCACCTTATTGGTGCATACCAAGTCTATTGC-C 1129
||||| || || || |||||||| | | ||||| |||| || |||||||||| |||| |
Sbjct 1127 GACATAGCTAACGCCGCCATTGTTG-TCCACCTCGTTGGAGCTTACCAAGTCT-TTGCTC 1184
Query 1130 AACCTC-TGTTTGC-TTTCATCGAGAAG-CAAGCTTC-CATTC-GAT-TCCCTGATAGTG 1183
| || | | ||||| ||| || || || || | | | || ||| ||| || | ||
Sbjct 1185 AGCC-CATCTTTGCCTTT-ATTGAAAAATCA-G-T-CGCAGAGAGATATCCA-GACAATG 1238
Query 1184 AGTTCATT-GCAAGAGA-TATCAAAATTCC-AATTCCAGG-TTTCAAGCATCTCC--ACT 1237
| ||| | ||||| || | | ||| | | ||| || || ||| ||| ||||| ||
Sbjct 1239 ACTTCCTCAGCAAG-GAATTTGAAA-T-CAGAATCCCCGGATTT-AAG--TCTCCTTACA 1292
Query 1238 T-G-AAT-GTCTTCAGGTTGATATGGGGGACAGTG--TTTGT-GATCATAACGACAGTTA 1291
| || || |||||| || | | ||| ||| ||||| | | | ||| || || |
Sbjct 1293 AAGTAAACGTTTTCAGGATGGTTTACAGGA--GTGGCTTTGTCGTT-ACAACCACCGTGA 1349
Query 1292 TCTCAATGCTTCTTCCGTTTTTCAACGACGTTGT-GGG-TCTGCTCGGGGCACTCGGGTT 1349
| || ||||| | |||||||| |||||||| || ||| ||| | ||||| | |||||
Sbjct 1350 TATCGATGCTGATGCCGTTTTTTAACGACGTGGTCGGGATCT--TAGGGGCGTTAGGGTT 1407
Query 1350 TTGGCCATTGACAGTGTATTTTCCAGTGGAAATGTACATTGCGCAGAAGAAGATACCTAG 1409
|||||| ||||| || |||||||| ||||| ||||| ||| ||||| |||| | |
Sbjct 1408 TTGGCCCTTGACGGTTTATTTTCCGGTGGAGATGTATATTAAGCAGAGGAAGGTTGAGAA 1467
Query 1410 ATGGAGCACCAGATGGGT 1427
||||||||| ||||||||
Sbjct 1468 ATGGAGCACGAGATGGGT 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90310780455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5