BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg476904 Length=989 Score E Sequences producing significant alignments: (Bits) Value AT1G77400.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 1424 0.0 > AT1G77400.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 328 Blast hits to 314 proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa - 130; Fungi - 28; Plants - 92; Viruses - 10; Other Eukaryotes - 56 (source: NCBI BLink). | chr1:29085811-29086864 FORWARD LENGTH=1054 Length=1054 Score = 1424 bits (771), Expect = 0.0 Identities = 922/990 (93%), Gaps = 29/990 (3%) Strand=Plus/Plus Query 1 CTAAAGTCatctctcttctatctatctatctgtctcttctTGAGAGCTaaaaa-aaaaTC 59 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| Sbjct 9 CTAAAGTCATCTCTCTTCTATCTATCTCTCTGTCTCTTCTTGAGAGCTAAAAAGAACATC 68 Query 60 AAATGGCCATTGTCCACGTTGATGATTCATTCAAGAGACCTGGAACTATACCTTTTAGCT 119 ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 69 AAATGGCCATTATCGACGTTGATGATTCATTCAAGAGACCAGGAACTATACCTTTTAGCT 128 Query 120 GGGAGATCCGACCCGGTGTACCCAAAACCCGAATGTCTCAACCCGGTAACACAACTCCTC 179 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 129 GGGAGATCCGACCCGGTGTACCTAAAACCCGAATGTCTCAACCCGGTAACACAACTCCTC 188 Query 180 TTCAGCCTCCAAAGAAACTCTCTCCTCTCCGGTTAAAACCTTTGTCTCACTCTCAGCCGC 239 ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| Sbjct 189 TTCAGCCTCCAAAGAAACTCTCTCCTCTCCGTTTTAAACCATTGTCTCACTCTCAGCCGC 248 Query 240 TTCTACCGCCGGCGTTATCTCCACCGTCTTCTTCTTTCATCTCCAACTCCAAAAGCCGTC 299 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 249 TTCTCCCGCCGGCGTTATCTCCACCGTCTTCTTCTTTCATCTCCAATTCCAAAAGCCGTC 308 Query 300 CTTTATCTCCTCTCACTCCCCATTCCTTTTCTACAACCCCATCGAAGCTCAAGCCGCCAC 359 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 309 CTTTATCTCCTCTCACTCCCCATTCCTTTTCTACAACCCCATCGAAGCTCAAGCCACCAC 368 Query 360 CAACACCGTCGTCG-TTTGCTGGATTCTACTCTCCGGGTCCTTCTTTCAGATCCTCTCCG 418 ||||||||||||| ||| ||||||| ||||||||||| ||||||||| |||| || ||| Sbjct 369 GAACACCGTCGTCGCTTT-CTGGATTTTACTCTCCGGGACCTTCTTTCCGATCATCGCCG 427 Query 419 CGTGCTTTCTCGGAACGGTGGCAGCTCCACCGCCCTAACCGGATTCGACCCGGATCTGAA 478 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 428 CGTGCTTTCTCGGAACGGTGGCAGCTCCACCGCCCTAACCGGATTCGACCCGAATCCGAA 487 Query 479 CCCGAACCAAGTTCCGATTTTTCTGTTGCCGGGTTCGGGTGTTTCCCGTCGCCTAGGTTT 538 || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 488 CCAGAACCAAGTTCCGATTTTTCTGTTGCCGGGTTCGGGTGTTTCCCGTCGCCTAAGTTT 547 Query 539 AGGTTGAGGAAGAAT-AAGAGCGGTGGTAGTCGGAGGAAAA-CCGGGTCGAGATCGGAGA 596 ||||||||||| | | |||||||||||||||||||| |||| |||||||||||||||||| Sbjct 548 AGGTTGAGGAA-AGTTAAGAGCGGTGGTAGTCGGAG-AAAATCCGGGTCGAGATCGGAGA 605 Query 597 ATGATTATTACTGCTCCGACATGGAGACGATGTCGCCGTGGACTGTTTCTAGCCGGAGAT 656 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 606 ATGATTATTATTGCTCCGACATGGAGACGATGTCGCCGTGGACTGTTTCAAGCCGTAGAT 665 Query 657 CGGTTTCTCCGAGATGGGAATCACCCAAGTCGTCGTTCTCTTCCCTCCGATTCTCGCCAC 716 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 666 CGGTTTCTCCGAGATGGGAATCACCCAAGTCGTCGTTTTCTTCTCTCCGATTCTCGCCAC 725 Query 717 GAATCGCCAACGAGGCTGAATGGGTTGGGTTTGGACTCTTTTGAGCACATTT-----G-- 769 || |||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 726 GATTCGCCAACGAAGCTGAATGGGTTGGGTTTGGACTCTTTTGAGCACATTTTCAATGAA 785 Query 770 --G-CTCGCGATCGGTTCTTTAGCCATCCGAAC-A--G----CTTCTTGAATCGCTCAAA 819 | ||||||||||||||||||||||||||||| | | | ||||||||||| |||| Sbjct 786 ATGGCTCGCGATCGGTTCTTTAGCCATCCGAACCAACGGAAGCCTCTTGAATCGCGCAAA 845 Query 820 TCAAATTAAAGCAAATGTTGGGCTAAAATGGGAGTTTTCAAAAGTTTAGGGTCCTATATC 879 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 846 TCAAATTAAAGCAAATGTTGGGCTAAAATGGGATTTTTCAAAAGTTTAGGGTCCTATATC 905 Query 880 TAATGTCCTT-AGAGTTTTCACATCTTTGTAGTATAA-TTTGTGGAA-TGTGGATGTCTA 936 |||||| ||| ||||||||||||||| |||| ||||| |||||||| |||||||||||| Sbjct 906 TAATGTGCTTTAGAGTTTTCACATCTGTGTAATATAAATTTGTGGATCTGTGGATGTCTA 965 Query 937 AAGACAATCCACCATTTTGAAGTTTTAAAG 966 |||||||| ||| |||||||| |||| ||| Sbjct 966 AAGACAATTCAC-ATTTTGAA-TTTTGAAG 993 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48425717708 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5