BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476904
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77400.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 1424 0.0
> AT1G77400.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis
thaliana protein match is: hydroxyproline-rich glycoprotein
family protein (TAIR:AT1G21695.1); Has 328 Blast hits
to 314 proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa
- 130; Fungi - 28; Plants - 92; Viruses - 10; Other Eukaryotes
- 56 (source: NCBI BLink). | chr1:29085811-29086864
FORWARD LENGTH=1054
Length=1054
Score = 1424 bits (771), Expect = 0.0
Identities = 922/990 (93%), Gaps = 29/990 (3%)
Strand=Plus/Plus
Query 1 CTAAAGTCatctctcttctatctatctatctgtctcttctTGAGAGCTaaaaa-aaaaTC 59
||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||
Sbjct 9 CTAAAGTCATCTCTCTTCTATCTATCTCTCTGTCTCTTCTTGAGAGCTAAAAAGAACATC 68
Query 60 AAATGGCCATTGTCCACGTTGATGATTCATTCAAGAGACCTGGAACTATACCTTTTAGCT 119
||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 69 AAATGGCCATTATCGACGTTGATGATTCATTCAAGAGACCAGGAACTATACCTTTTAGCT 128
Query 120 GGGAGATCCGACCCGGTGTACCCAAAACCCGAATGTCTCAACCCGGTAACACAACTCCTC 179
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 129 GGGAGATCCGACCCGGTGTACCTAAAACCCGAATGTCTCAACCCGGTAACACAACTCCTC 188
Query 180 TTCAGCCTCCAAAGAAACTCTCTCCTCTCCGGTTAAAACCTTTGTCTCACTCTCAGCCGC 239
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 189 TTCAGCCTCCAAAGAAACTCTCTCCTCTCCGTTTTAAACCATTGTCTCACTCTCAGCCGC 248
Query 240 TTCTACCGCCGGCGTTATCTCCACCGTCTTCTTCTTTCATCTCCAACTCCAAAAGCCGTC 299
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 249 TTCTCCCGCCGGCGTTATCTCCACCGTCTTCTTCTTTCATCTCCAATTCCAAAAGCCGTC 308
Query 300 CTTTATCTCCTCTCACTCCCCATTCCTTTTCTACAACCCCATCGAAGCTCAAGCCGCCAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 309 CTTTATCTCCTCTCACTCCCCATTCCTTTTCTACAACCCCATCGAAGCTCAAGCCACCAC 368
Query 360 CAACACCGTCGTCG-TTTGCTGGATTCTACTCTCCGGGTCCTTCTTTCAGATCCTCTCCG 418
||||||||||||| ||| ||||||| ||||||||||| ||||||||| |||| || |||
Sbjct 369 GAACACCGTCGTCGCTTT-CTGGATTTTACTCTCCGGGACCTTCTTTCCGATCATCGCCG 427
Query 419 CGTGCTTTCTCGGAACGGTGGCAGCTCCACCGCCCTAACCGGATTCGACCCGGATCTGAA 478
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 428 CGTGCTTTCTCGGAACGGTGGCAGCTCCACCGCCCTAACCGGATTCGACCCGAATCCGAA 487
Query 479 CCCGAACCAAGTTCCGATTTTTCTGTTGCCGGGTTCGGGTGTTTCCCGTCGCCTAGGTTT 538
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 488 CCAGAACCAAGTTCCGATTTTTCTGTTGCCGGGTTCGGGTGTTTCCCGTCGCCTAAGTTT 547
Query 539 AGGTTGAGGAAGAAT-AAGAGCGGTGGTAGTCGGAGGAAAA-CCGGGTCGAGATCGGAGA 596
||||||||||| | | |||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 548 AGGTTGAGGAA-AGTTAAGAGCGGTGGTAGTCGGAG-AAAATCCGGGTCGAGATCGGAGA 605
Query 597 ATGATTATTACTGCTCCGACATGGAGACGATGTCGCCGTGGACTGTTTCTAGCCGGAGAT 656
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 606 ATGATTATTATTGCTCCGACATGGAGACGATGTCGCCGTGGACTGTTTCAAGCCGTAGAT 665
Query 657 CGGTTTCTCCGAGATGGGAATCACCCAAGTCGTCGTTCTCTTCCCTCCGATTCTCGCCAC 716
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 666 CGGTTTCTCCGAGATGGGAATCACCCAAGTCGTCGTTTTCTTCTCTCCGATTCTCGCCAC 725
Query 717 GAATCGCCAACGAGGCTGAATGGGTTGGGTTTGGACTCTTTTGAGCACATTT-----G-- 769
|| |||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 726 GATTCGCCAACGAAGCTGAATGGGTTGGGTTTGGACTCTTTTGAGCACATTTTCAATGAA 785
Query 770 --G-CTCGCGATCGGTTCTTTAGCCATCCGAAC-A--G----CTTCTTGAATCGCTCAAA 819
| ||||||||||||||||||||||||||||| | | | ||||||||||| ||||
Sbjct 786 ATGGCTCGCGATCGGTTCTTTAGCCATCCGAACCAACGGAAGCCTCTTGAATCGCGCAAA 845
Query 820 TCAAATTAAAGCAAATGTTGGGCTAAAATGGGAGTTTTCAAAAGTTTAGGGTCCTATATC 879
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 846 TCAAATTAAAGCAAATGTTGGGCTAAAATGGGATTTTTCAAAAGTTTAGGGTCCTATATC 905
Query 880 TAATGTCCTT-AGAGTTTTCACATCTTTGTAGTATAA-TTTGTGGAA-TGTGGATGTCTA 936
|||||| ||| ||||||||||||||| |||| ||||| |||||||| ||||||||||||
Sbjct 906 TAATGTGCTTTAGAGTTTTCACATCTGTGTAATATAAATTTGTGGATCTGTGGATGTCTA 965
Query 937 AAGACAATCCACCATTTTGAAGTTTTAAAG 966
|||||||| ||| |||||||| |||| |||
Sbjct 966 AAGACAATTCAC-ATTTTGAA-TTTTGAAG 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48425717708
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5