BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476907
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77420.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2080 0.0
> AT1G77420.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:29093499-29095716 FORWARD LENGTH=1565
Length=1565
Score = 2080 bits (1126), Expect = 0.0
Identities = 1347/1447 (93%), Gaps = 42/1447 (3%)
Strand=Plus/Plus
Query 84 TTGAATCTCCAGAATCCATGGATCGTGCTTTAACTTCC-CGTTTTG-------A--TACT 133
|||||||||||||||||||||||||||||||||| ||| ||||||| | ||||
Sbjct 126 TTGAATCTCCAGAATCCATGGATCGTGCTTTAAC-TCCGCGTTTTGATACTCCAGCTACT 184
Query 134 CTCTACCCTTTCCGATACCGACATAGGAGCTCTCTGACCATCACTCGACGATTCGCGCCG 193
|||| |||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 185 CTCTCCCCTTTCCGATACCGATATGGGAGCTCTCTGGCCATCACTCGACGATTCGCGCCG 244
Query 194 GCGATTGTTTGCGCGAAACGATCTCCGATCGATGGAGTGAGCGACGAGCTGAATCTGATC 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GCGATTGTTTGCGCGAAACGATCTCCGATCGATGGAGTGAGCGACGAGCTGAATCTGATT 304
Query 254 GCTTCACAGAACTTAGATCAAGCTCCCGCACGAAGACGAGCCCGTTCCGCATTTGTTGAC 313
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 305 GCTTCACAGAACTTAGATCAAGCTCCCGCACGAAGACTAGCCCGTTCCGCTTTTGTTGAC 364
Query 314 TTGCAGCTTCAGCTGGATCACTGCTTGTTCAAGAAAGCTCCGATTGGAATCAGAACAGAG 373
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 365 TTGCAGCTTCAGCTGGATCACTGCTTGTTCAAGAAAGCTCCGAGTGGGATCAGAACAGAG 424
Query 374 GAGTGGTATGAGAGAAATTCGAAAGGGGAAGAAATTTTCTGCAAGAGTTGGTTGCCGAAA 433
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 425 GAGTGGTATGAGAGAAATTCGAAAGGGGAAGATATTTTCTGCAAGAGTTGGTTGCCGAAA 484
Query 434 TCCGGCGAAGAAATCAAAGCTGCGGTGTGTTTCTGTCATGGCTATGGCAGCACTTGCACT 493
|||||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 485 TCCGGCGACGAAATCAAAGCTGCTGTATGTTTCTGTCATGGCTATGGAAGCACTTGCACT 544
Query 494 TTCTTCTTCGATGGTATAGCAAAGCAAATAGCAGGTTTTGGTTATGGAGTTTATGCTATA 553
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 545 TTCTTCTTCGATGGTATAGCAAAGCAAATAGCAGGTTTTGGTTATGGGGTTTATGCTATA 604
Query 554 GACCATCCTGGTTTTGGCCTATCAGATGGTTTACATGGTCACATCCCAAGTTTTGATGAC 613
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 605 GACCATCCTGGTTTTGGTTTATCAGATGGTTTACATGGTCACATTCCAAGTTTTGATGAC 664
Query 614 TTAGCTGAGAATGCTATTGAACAGTTCACCAAAATGAAAGGGAGACCTGAATTGAGAAAT 673
||||| || |||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 665 TTAGCAGACAATGCTATTGAACAGTTCACCAAAATGAAAGGGAGATCGGAATTGAGAAAT 724
Query 674 TTGCCCCGGTTTCTGCTCGGACAGTCAATGGGAGGAGCAGTTGCCTTGAAAATTCATCTG 733
|||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 725 TTGCCCCGGTTTTTGCTGGGACAGTCAATGGGAGGAGCAGTTGCCTTAAAAATTCATCTT 784
Query 734 AAAGAACCTCAAGCTTGGGATGGTCTTATCCTTGCCGCTCCAATGTGTAAGATTTCAGAA 793
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 785 AAAGAACCTCAAGCTTGGGATGGTCTTATCCTTGTCGCTCCAATGTGTAAGATTTCAGAA 844
Query 794 GATGTAAAACCTCCTCCACTAGTCTTGAAGGCGTTAATCTTGATGTCGACACTATTTCCC 853
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 845 GATGTAAAACCTCCTCCACTAGTCTTGAAGACGTTAATCTTGATGTCGACACTATTTCCC 904
Query 854 AAAGCGAAGCTCTTTCCAAAGAGAGACTTGAGCGACTTCTTCTTCAGGGACCCGAGTAAA 913
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 905 AAAGCAAAGCTCTTTCCAAAGAGAGACTTGAGCGACTTCTTCTTCAGGGACCTGAGTAAA 964
Query 914 AGAAAATTGTGTGAGTACGATGTGATTTGCTACGATGATCAAACACGTCTAAAAACTGCT 973
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 965 AGAAAATTGTGTGAGTACGATGTGATATGCTACGATGATCAAACACGTCTCAAAACTGCT 1024
Query 974 GTTGAACTTCTAAATGCAACAAGAGACATTGAGATGCAAGTTGACAAGGTCTCGTTGCCG 1033
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GTTGAACTTCTAAATGCAACAAGAGACATTGAGATGCAAGTTGACAAGGTCTCGTTGCCA 1084
Query 1034 CTGTTGATACTTCATGGAGACGCTGATAAAGTCACAGATCCCACTGTGAGCAAATTCCTT 1093
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1085 CTGTTGATACTTCATGGAGACACTGATAAAGTCACAGATCCCACTGTGAGTAAATTCCTT 1144
Query 1094 CACGAGCATGCAATCAGCCAAGACAAGACTCTAAAACTCTATCCAGGTGGCTACCATTGC 1153
||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 CACAAACATGCAGTCAGCCAAGACAAGACTCTAAAACTCTATCCAGGTGGCTACCATTGC 1204
Query 1154 ATTCTAGAAGGTGATACAGACGAAAATATTTTCACTGTAATCAACGACATAGTTGCTTGG 1213
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1205 ATTCTAGAAGGTGATACAGACGAAAATATTTTCACTGTAATCAATGACATCGTTGCTTGG 1264
Query 1214 CTCGATGCCCGCGTTGCTCCCAAGTAAAGTGAGATTATATCTCCACAAACCTATACTCAT 1273
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||| ||
Sbjct 1265 CTCGATGCCCGCGTTGATCCCAAGTAAAGTGAGATCATCTCTCCACAAACCTATACTTAT 1324
Query 1274 TATTGTCTTCTGAAAAATGTCGAGTCTCTATGATTAAAGATC----T--G---------T 1318
|||||||||||||| | |||||||||||| |||||||| ||| | | |
Sbjct 1325 TATTGTCTTCTGAATACTGTCGAGTCTCTGTGATTAAACATCCGGATAAGAAGAAAAAAT 1384
Query 1319 -G----G---CTTACAATGAATACACAACCTTGGCCCTTGCTTGCTTAGCTTAGCTAGTG 1370
| | |||||||||||||||||||||| ||| ||| || | ||||||||||||
Sbjct 1385 AGATATGTGGCTTACAATGAATACACAACCTTAGCCGTTG-TT--T--GCTTAGCTAGTG 1439
Query 1371 CCTCTAAAGCTACATCAGCCGCATCTTTCAAACTGTAGTTAGTAGTGTTTGGGTGCACAT 1430
| |||| ||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct 1440 CTTCTAGTGCTACATCAGCCGCATCTTTCGAAGTGTAGTTAGTATTGTTTGGGTGCACAT 1499
Query 1431 AAGTCAGGCTCAGAATCAAATTGATGACTGATTCTCTCATTTGAACCATATTGCTCTAAG 1490
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
Sbjct 1500 AAGTCAGGCTCAGAATCAAATTGATGACTGAT-CTC--ATTTGAACCATATTGCTCTGAC 1556
Query 1491 AGATCCT 1497
|||||||
Sbjct 1557 AGATCCT 1563
Score = 87.9 bits (47), Expect = 3e-16
Identities = 77/90 (86%), Gaps = 7/90 (8%)
Strand=Plus/Plus
Query 1 TCGATTATCATTCTGGTAGTTGAAGAC--T-T-GAAGAC-T-G-AGTCGTCGTAGCACGT 53
||||| |||||||||||||||||| || | | | | | | | |||||||||||||||
Sbjct 3 TCGATCATCATTCTGGTAGTTGAAAACTTTGTCGTCGTCGTCGTCGTCGTCGTAGCACGT 62
Query 54 GTTGCACGTGAGAAATTTCCCGCACAAAAT 83
||||||||||||||||||||||||||||||
Sbjct 63 GTTGCACGTGAGAAATTTCCCGCACAAAAT 92
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5