BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476911
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77470.1 | Symbols: RFC3, RFC5 | replication factor C subuni... 2145 0.0
> AT1G77470.1 | Symbols: RFC3, RFC5 | replication factor C subunit
3 | chr1:29111948-29114435 REVERSE LENGTH=1468
Length=1468
Score = 2145 bits (1161), Expect = 0.0
Identities = 1321/1399 (94%), Gaps = 7/1399 (1%)
Strand=Plus/Plus
Query 1 AGAAAATGGCGGAAGGAAA-CCCCTAGAGGGTTTTGGCGCCATCAGC-GGGAGAGAGTGA 58
||||||||||||||||||| ||| ||||| ||||||||||| | | ||||||||||||
Sbjct 1 AGAAAATGGCGGAAGGAAAGAGCCTTGAGGG-TTTGGCGCCATTACCGGGGAGAGAGTGA 59
Query 59 AATTAGGGCTGAGCGAGATAGATTCTGAAGCAATTTCTTTTACGGCGGCGAAGATGACTG 118
|||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct 60 AATTAGGGCTGAGCGAGAGAGATTCTGAAATAATTTCTTTTACGGCGGTGAAGATGACTG 119
Query 119 AGATAACGTCGGCGATGGACATTGACGTAGACGAAATTCAGCCTCGCAAGCCGATTAACA 178
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 120 AGCTAACGTCGGCGATGGACATTGACGTAGACGAAATTCAGCCTCGCAAGCCGATAAACA 179
Query 179 AGGGCAAAGATGTCGCCGGATTTGGTGCTCCGCCGCAGAGTAAGGCGACGCCTTGGGTTG 238
|||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 180 AGGGCAAAGACGTCGTCGGTTTTGGACCTCCGCCGCAGAGTAAGGCGACGCCTTGGGTTG 239
Query 239 AGAAGTACCGACCTCAGTCGCTTGATGACGTCGCTGCACATCGTGACATCATTGACACGA 298
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 240 AGAAGTATCGACCTCAGTCGCTTGATGACGTGGCTGCACATCGTGACATTATTGATACGA 299
Query 299 TTGATAGGCTGACCAATGAGAACAAATTGCCCCATCTTCTCTTGTATGGTCCTCCCGGTA 358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 300 TTGATAGGCTGACCAATGAGAACAAATTGCCCCATCTTCTGTTGTATGGTCCTCCCGGTA 359
Query 359 CAGGCAAAACATCCACCATTCTAGCCGTCGCCCGGAAACTATATGGACCCAAGTACCGTA 418
| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |
Sbjct 360 CTGGCAAAACATCCACCATTCTAGCTGTTGCCCGGAAACTATATGGACCAAAGTACCGGA 419
Query 419 ATATGATTCTTGAACTGAACGCATCAGATGATAGAGGAATTGATGTTGTAAGGCAGCAGA 478
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 420 ATATGATTCTTGAACTGAACGCATCAGACGATAGAGGAATCGATGTTGTAAGGCAGCAGA 479
Query 479 TTCAGGATTTCGCTAGCACGCAGAGCTTCTCTTTAGGAAAATCTTCGGTGAAGTTGGTTC 538
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 480 TTCAAGATTTCGCTAGCACGCAGAGTTTCTCTTTAGGAAAATCTTCGGTGAAGTTGGTTT 539
Query 539 TGCTAGATGAAGCAGATGCCATGACAAAAGATGCTCAGTTTGCCTTGCGTAGAGTGATTG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGCTAGATGAAGCAGATGCCATGACAAAAGATGCTCAGTTTGCCTTGCGTAGAGTGATTG 599
Query 599 AGAAATACACAAAGAGTACTAGGTTTGCGCTCATTGGAAACCATGTCAATAAGATCATCC 658
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGAAATACACTAAGAGTACTAGGTTTGCGCTCATTGGAAACCATGTCAATAAGATCATCC 659
Query 659 CAGCTTTGCAGTCGAGATGTACTCGATTTAGATTTGCCCCTCTTGATCCTCTTCATGTGA 718
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 660 CAGCTTTGCAGTCGAGATGTACTCGATTTAGATTTGCCCCTCTTGATGGAGTTCATATGA 719
Query 719 GTCAACGTCTGAAACATGTAATAGAAGCTGAAGGGCTTGGTGTTAGTGATTGTGGTTTGG 778
|||||||||| ||||||||||||||||||||| |||||| ||| ||||| ||||||||||
Sbjct 720 GTCAACGTCTTAAACATGTAATAGAAGCTGAAAGGCTTGTTGTAAGTGACTGTGGTTTGG 779
Query 779 CAGCTCTTGTACGGCTGAGCAATGGAGACATGAGAAAAGCATTGAACATTTTGCAGTCAA 838
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 780 CAGCTCTTGTACGGCTGAGCAATGGGGACATGAGAAAAGCATTGAACATTTTGCAGTCAA 839
Query 839 CGCATATGTCGTCAAAGGAAATTACAGAGAAAGAGTCAAAGAAAATTACAGAGGAAGAGG 898
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct 840 CGCATATGGCGTCAAAGGAAATTACAGAGGAAGAGTCAAAGCAAATTACAGAGGAAGACG 899
Query 899 TTTACCTCTGCACCGGAAACCCATTGCCCAAGGACATTCAGCAGATATCTCACTGGCTTC 958
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 900 TTTACCTCTGCACCGGAAACCCATTGCCCAAGGACATTGAGCAGATATCTCACTGGCTTC 959
Query 959 TGAATAAACCATTTGATGAGTGCTACAAAAACATTTCAGAAATTAAAACGAGAAAAGGAC 1018
||||||||||||||||||||||||||||| || |||||||||| || |||||||||||||
Sbjct 960 TGAATAAACCATTTGATGAGTGCTACAAAGACGTTTCAGAAATCAAGACGAGAAAAGGAC 1019
Query 1019 TTGCCATTGTTGATATCGTCAGAGAGGTTACCATGTTTGTTTTAAAAATCAAGATGCCTT 1078
||||||||||||||||||||| |||| ||||| ||||| |||| ||||||||||||||||
Sbjct 1020 TTGCCATTGTTGATATCGTCAAAGAGATTACCTTGTTTATTTTTAAAATCAAGATGCCTT 1079
Query 1079 CA-CATGTCAGAGTTCAACTGATAAACGATTTGGCAGACATCGAGTACAGATTGAGTTTT 1137
| | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1080 CCGC-TGTCAGAGTTCAACTGATAAACGATTTGGCAGACATTGAGTACAGATTAAGTTTT 1138
Query 1138 GGGTGCAACGACAAACTGCAGCTTGGAGCTATCATTTCTACGTTCACACATGCCCGGTCT 1197
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1139 GGTTGCAACGACAAACTGCAGCTTGGAGCTATCATTTCTACTTTCACACATGCCCGGTCT 1198
Query 1198 ATCATTGTTGATGCAGCAAAATAAACCATGTTTTTACCATTTTGGAACCCGCAGTAGCTC 1257
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATCATTGTTGGTGCAGCAAAGTAAACCATGTTTTTACCATTTTGGAACCCGCAGTAGCTC 1258
Query 1258 GCCACCTTAACAAACCGCTAGAATATTTTATCTCGGTGATGTTTTCCTGATAGTCTCTGT 1317
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1259 GCCACCTTAACAAACCGCTAGAATGTTTTATCTCCGTGATGTTTTCCTGATAGTCTCTGT 1318
Query 1318 ACATTTTATGGCGTATGTGACCAA-AGCCTTGCTTTTAAATTTCCTATGAAGAGTTTCAA 1376
||||||| |||||| ||||||||| || ||||||||| | |||| |||||||||||||||
Sbjct 1319 ACATTTTGTGGCGTTTGTGACCAATAGGCTTGCTTTTTA-TTTCTTATGAAGAGTTTCAA 1377
Query 1377 TGCCACCTTGTTATCCTCT 1395
|||||||||||||||||||
Sbjct 1378 TGCCACCTTGTTATCCTCT 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69728557005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5