BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476912
Length=1641
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77480.1 | Symbols: | Eukaryotic aspartyl protease family p... 2357 0.0
> AT1G77480.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:29114558-29117338 REVERSE LENGTH=1736
Length=1736
Score = 2357 bits (1276), Expect = 0.0
Identities = 1444/1522 (95%), Gaps = 24/1522 (2%)
Strand=Plus/Plus
Query 74 ATTCTACAAAGAAAGGAGCCCTCCTTTTTGTTGCCCTGTGTCAAAAAAGAAACCTTTTT- 132
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 90 ATTCTACAAAGAAA-AAG-CCTCCTTTTTGTTGCCCTGTGTCAAAAAAGAAACCTTTTTG 147
Query 133 G-GGGATTTGGTTTCGCTTTCTT-GGGGCCaaaaaaaaaG-GA-GATGAATCCG-A-AA- 185
| ||||||||||||||||||||| |||||| ||||| | | || |||||||||| | ||
Sbjct 148 GTGGGATTTGGTTTCGCTTTCTTGGGGGCC-AAAAAGAGGAGATGATGAATCCGAATAAG 206
Query 186 CAGGAGACAAGAAACCTTCACTTCTTCTTCTTAGTCTTCGTCTTCTATGTGTTCGTCCTC 245
||| | | |||||||||| ||||||||||| ||||||||||||||||| ||| |||||
Sbjct 207 CAGCAAAGAAGAAACCTTTACTTCTTCTTC---GTCTTCGTCTTCTATGTCTTCATCCTC 263
Query 246 TGTGCTCGCTTTCAACCCTCTGATGCTACTACCAAAGACTCGTCGGCTGGACAAGTGAAG 305
||||||||||||||| ||||||| |||||| ||||||||||||||| |||||||||
Sbjct 264 TGTGCTCGCTTTCAAACCTCTGAAGCTACT---AAAGACTCGTCGGCT---CAAGTGAAG 317
Query 306 TTACAGAATCGTCGACTTGGCTCCTCCGTCGTGTTTCCTGTCTCCGGGAATGTGTATCCT 365
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 318 TTACAGAATCGTCGACTTAGCTCCACCGTCGTGTTTCCTGTCTCCGGGAATGTGTATCCT 377
Query 366 CTTGGGTACTATTATGTGTTGCTTAACATCGGCAACCCACCTAAGCTCTTTGACTTGGAC 425
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 378 CTTGGGTACTATTATGTGTTGCTTAACATTGGCAACCCACCTAAGCTCTTTGACTTGGAC 437
Query 426 ATTGACACTGGCAGTGACCTCACTTGGGTTCAGTGTGATGCACCCTGCAACGGTTGCACA 485
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 438 ATTGACACTGGCAGTGACCTCACTTGGGTTCAGTGTGATGCACCTTGCAACGGTTGCACA 497
Query 486 AAGCCTCGTGCTAAGCAGTACAAGCCCAATCACAACACTTTGCCTTGTTCACACCA-CTT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 498 AAGCCTCGTGCTAAGCAGTACAAGCCCAATCACAACACTTTGCCTTGTTCACA-CATCTT 556
Query 545 GTGTTCTGGCCTCGACCTTACCCAAAATAGACCTTGTGATGACCCTGAGGATCAATGTGA 604
||||||||| || |||||| |||| | |||||||||| |||||||||||||||||||||
Sbjct 557 GTGTTCTGGTCTTGACCTTCCCCAGGACAGACCTTGTGCTGACCCTGAGGATCAATGTGA 616
Query 605 CTATGAAATCGGATACTCCGATCATGCATCATCTATTGGTGCACTTGTAACTGATGAGTT 664
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 617 CTATGAAATCGGATACTCCGATCATGCATCATCTATTGGTGCACTTGTAACTGATGAGGT 676
Query 665 TCCTCTAAAACTCGCAAATGGCTCCATTATGAATCCTCATTTGACATTTGGATGTGGGTA 724
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 677 TCCTCTAAAACTCGCAAATGGCTCCATTATGAATCTTCGTTTGACATTTGGATGTGGGTA 736
Query 725 TGATCAGCAGAATCCTGGTCCACACCCTCCTCCTCCAACAGCGGGAATACTTGGCCTTGG 784
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 737 TGATCAGCAGAATCCTGGTCCACATCCTCCTCCTCCAACAGCGGGAATACTTGGCCTTGG 796
Query 785 AAGAGGGAAAGTAGGCATCTCAACTCAGCTTAAGTCCTTGGGGATAACGAAGAATGTGAT 844
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 797 AAGAGGGAAAGTAGGCCTCTCAACTCAGCTAAAGTCCTTGGGGATAACGAAGAATGTGAT 856
Query 845 TGTGCATTGCTTAAGTCATACTGGTAAAGGCTTTCTCTCTATTGGAGATGAGCTTGTTCC 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 TGTGCATTGCTTAAGTCATACTGGTAAAGGCTTTCTCTCTATTGGAGATGAGCTTGTTCC 916
Query 905 TTCTTCTGGAGTTACATGGAATTCATTGGCTACTAATTCAGCTAGTAAAAACTACATGAC 964
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct 917 TTCTTCTGGAGTTACATGGACTTCATTGGCTACTAATTCACCTAGTAAAAACTACATGGC 976
Query 965 TGGACCAGCAGAGCTTCTCTTTAACGACAAGACCACAGGTGTCAAAGGCATTAACGTAGT 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TGGACCAGCAGAGCTTCTCTTTAACGACAAGACCACAGGTGTCAAAGGCATTAACGTAGT 1036
Query 1025 TTTTGATAGTGGAAGCTCGTACACTTACTTCAACGCCGAAGCATACCAAGCGATTCTCGA 1084
||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1037 TTTCGATAGTGGAAGCTCGTACACTTACTTCAATGCAGAAGCATACCAAGCTATTCTCGA 1096
Query 1085 TCTTATAAGAAAAGACTTGAATGGGAAGCCTTTGACGGAGACAAAAGATGATAAAAGCTT 1144
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1097 TCTTATAAGAAAAGACTTGAATGGGAAGCCTTTGACGGACACAAAAGATGATAAAAGCTT 1156
Query 1145 ACCGGTCTGCTGGAAAGGTAAAAAACCTTTGAAATCACTTGATGAGGTCAAGAAATACTT 1204
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1157 ACCAGTCTGCTGGAAAGGCAAAAAACCTTTGAAATCACTTGATGAGGTTAAGAAATACTT 1216
Query 1205 CAAGACTATTACTTTACGATTTGGGTATCAAAAGAATGGTCAGCTATTTCAGGTTCCACC 1264
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1217 CAAGACGATTACTTTACGATTTGGGAATCAAAAGAATGGTCAGCTATTTCAGGTTCCACC 1276
Query 1265 TGAGTCGTGTCTCATTATCACTGAAAAAGGAA-ATGTATGTTTGGGTATTCTGAACGGAA 1323
|||||||| |||||| ||||| |||||||||| | |||||||||||||||||||| ||||
Sbjct 1277 TGAGTCGTATCTCATAATCACCGAAAAAGGAAGA-GTATGTTTGGGTATTCTGAATGGAA 1335
Query 1324 CTGAAGTCGGGCTCAACAGCTACAATATCATTGGAGACATATCTTTCCAAGGGATAATGG 1383
||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 CTGAAATCGGTCTCGAGGGCTACAATATCATTGGAGACATATCTTTCCAAGGGATAATGG 1395
Query 1384 TGATCTATGACAATGAGAAGCAGAGGATTGGATGGATTTCTTCAGACTGTGACAAACTTC 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 TGATCTATGACAATGAGAAGCAGAGGATTGGATGGATTTCTTCAGACTGTGACAAACTTC 1455
Query 1444 CCAATGTGAATCACGACTATGAAGGAGATCTGTCGGAGGAAGCTTATCCAATAGGATTTG 1503
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1456 CCAATGTGAATCACGACTATGGAGGAGATCTGTCGGAGGAAGCTTATCCAATAGGATTTG 1515
Query 1504 GTTTGATAAAAGAGCTTTTCTCAGGAAGTGATTCTTCTAAGAACAAGAACTTGGTCTCTG 1563
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1516 GTTTGATAAAAGAGCTTTTCTCAGGAAGTGATTCTTCAAAGAACAAGAACTTGGTCTCAG 1575
Query 1564 ATGGAGAGCTTTGACACATGAG 1585
|||||||||||||||||| |||
Sbjct 1576 ATGGAGAGCTTTGACACAAGAG 1597
Score = 95.3 bits (51), Expect = 2e-18
Identities = 56/58 (97%), Gaps = 1/58 (2%)
Strand=Plus/Plus
Query 1585 GGTTTTTGGTTTTGTTGTTATCATAGAAACAAGGAAA-TCTTTTGTGAATATATATAT 1641
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1644 GGTTTTTGGTTTTGTTGTTATCATAGAAACAAGGAAAATATTTTGTGAATATATATAT 1701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81073880175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5