BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476925
Length=1562
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77610.1 | Symbols: | EamA-like transporter family protein ... 2366 0.0
AT1G21870.1 | Symbols: GONST5 | golgi nucleotide sugar transpor... 1050 0.0
> AT1G77610.1 | Symbols: | EamA-like transporter family protein
| chr1:29165210-29167773 FORWARD LENGTH=1577
Length=1577
Score = 2366 bits (1281), Expect = 0.0
Identities = 1490/1586 (94%), Gaps = 33/1586 (2%)
Strand=Plus/Plus
Query 1 ATAATTTTCATGGCATaaaaagagagaaagagagagtcaaaga-gggagacgtttgagat 59
||||||||||||||||||| || |||| ||||||||||| ||| |||||||||||||||
Sbjct 1 ATAATTTTCATGGCATAAAGAGTGAGAGAGAGAGAGTCATAGACAGGAGACGTTTGAGAT 60
Query 60 tgatgaacagagaATTCGAAACAAATCACATGGAAGAAGAGCTCTC-TTCTGCTACCGTT 118
|||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 61 TGATGAACAGCGAATTCGAAACAAATCACATGGAAGAAGAGCTCTCTTTC-GCTACCGTT 119
Query 119 ACCTTCTTCACTTTTCTCCTTCATTAGGGTTTTCTCTC-TATTTAGCTGCGCAGctctct 177
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 ACCTTCTCCACTTTTCTCCTTCATTAGGGTTTTCTCTCTTATTTAGCTGCGCAGCTCTCT 179
Query 178 ctctctctct-ctctTTCTCATCTTAAAACTCGTTAATTTCTTCTGGGTTTTTGTCTCTT 236
|||| ||| | | ||| | |||||||||||||||||||||| ||||||||||||||||
Sbjct 180 CTCTTTCT-TACGGATTCACTTCTTAAAACTCGTTAATTTCTTGTGGGTTTTTGTCTCTT 238
Query 237 TTGCGATCTGATTCCGAAAGTTGAGT--GA--GAGAGAATCATGGAGGAAGGAAGTATGT 292
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 239 TTGCGATCTGATTCCGAAAGTTGAGTGAGAGTGAGAGAATCATGGAGGAAGGAAGTATGT 298
Query 293 TCAGATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAACGTTACCGTCATCATCATGA 352
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 TCAGATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAATGTTACCGTCATCATCATGA 358
Query 353 ACAAATGGATCTTTCAGAAACTGGATTTCAAGTTTCCACTATCGGTTTCATGTGTTCACT 412
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 ACAAATGGATCTTTCAGAAACTGGATTTTAAGTTTCCACTATCGGTTTCATGTGTTCACT 418
Query 413 TCATATGTTCATCGATTGGAGCTTACATCGTTATCAAAGTTCTCAAGCTTAAACCATTGA 472
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TCATATGTTCGTCGATTGGAGCTTACATCGTTATCAAAGTTCTCAAGCTTAAACCATTGA 478
Query 473 TTGTTGTTGA-CCAGAAGATCGGTGGAGGAGGATTTTTCCAATGTCTTTCGTGTTTTGTA 531
||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 TTGTTGTCGATCCTGAAGATCGATGGAGGAGGATTTTTCCAATGTCTTTCGTGTTTTGTA 538
Query 532 TCAACATTGTGTTGGGAAATGTCAGTCTTCGATACATTCCTGTTTCGTTTATGCAGACGA 591
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 539 TCAACATTGTCTTGGGAAATGTCAGTCTTCGTTACATTCCGGTTTCGTTTATGCAGACGA 598
Query 592 TTAAATCTTTCACTCCAG---CTAC--------TACAGTGGCTAGTATGGAGGAAATACT 640
|||| ||||||||||||| |||| |||||||||| ||||||||||||||||
Sbjct 599 TTAAGTCTTTCACTCCAGCTACTACAGTTGTGTTACAGTGGCTGGTATGGAGGAAATACT 658
Query 641 TTGACTGGCGTATTTGGGCGTCTCTCGTGCCCATTGTTGGTGGAATTCTTCTGACCTCTG 700
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 659 TTGACTGGCGTATTTGGGCGTCTCTCGTGCCTATTGTTGGTGGAATTCTTCTGACATCTG 718
Query 701 TTACCGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCTTGTTTGGATGTTTAGCTA 760
| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 719 TGACTGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCCTGTTTGGATGTTTAGCTA 778
Query 761 CTTCCACAAAGACCATTCTAGCCGAATCCCTTCTTCATGGTTACAAATTTGACAGCATAA 820
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 779 CTTCCACAAAGACCATTCTAGCCGAATCTCTTCTTCATGGTTACAAATTTGACAGCATAA 838
Query 821 ACACTGTATACTATATGGCGCCTTTTGCCACCATGATCCTCGGGATACCAGCACTATTAC 880
|||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 839 ACACCGTTTACTATATGGCGCCTTTTGCCACCATGATTCTCGGGATACCAGCGTTATTAC 898
Query 881 TGGAAGGCAGTGGAATTTTGAGTTGGTTTGAAGCACACCCTGCTCCCTGGTCAGCCCTCA 940
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 TGGAAGGCAGTGGAATTTTGAGCTGGTTTGAAGCACACCCTGCTCCCTGGTCAGCCCTCA 958
Query 941 TCATTATATTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCCATCTTCTACGTCA 1000
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 959 TCATTATACTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCCATCTTCTATGTCA 1018
Query 1001 TTCACTCCACAACCGCAGTCACATTCAACGTAGCTGGAAACCTTAAGGTTGCCGTAGCTG 1060
||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 1019 TTCACTCCACAACTGCAGTCACATTCAACGTGGCTGGAAACCTTAAGGTTGCAGTGGCTG 1078
Query 1061 TATTGGTCTCATGGTTGATATTCCGTAACCCAATATCGTATATGAATGCTGTTGGATGCG 1120
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1079 TAATGGTCTCATGGTTGATATTCCGTAACCCAATATCATATATGAATGCTGTTGGATGCG 1138
Query 1121 GAATTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATGCTTTCACAGCAAA 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GAATTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATGCTTTCACAGCAAA 1198
Query 1181 CACCGGGAACTCCTAGGACACCTCGTACCCCAAGAAGCAAGATGGAATTACTTCCTCTTG 1240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1199 CACCGGGAACTCCTAGGACTCCTCGTACCCCAAGAAGCAAGATGGAATTACTTCCACTTG 1258
Query 1241 TTAATAATGATAAACTCGAAGGCAAAGTCTGATCTTATCCAATCCGCAGCTCAGTTTAGC 1300
|||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct 1259 TTAATAATGATAAACTCGAAGGCAAAGTCTGATCTTCTTCATTCCGCAGCTCAGTTTAG- 1317
Query 1301 ACTCACTGTCACTGGGTT-AGGGTACTGCGGAAGAGAAGCATTCACACAAGCGGTGTTGA 1359
| ||| |||||| || ||||| |||| ||||||||||||| ||||||| ||||||||
Sbjct 1318 --T-ACT--CACTGG-TTCAGGGTGCTGCAGAAGAGAAGCATTGACACAAGGGGTGTTGA 1371
Query 1360 ATTTTTACTAAATATGCGTTTTACTAAAAAACCTTAATAGAGAAAAGTTACAtttttttt 1419
||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1372 ATTTTTACTAAATATGCATTTTACTCAAAAACCTTAGTAGAGAAAAGTTACATTTTTTTT 1431
Query 1420 tttCGTTTTGATTTGATTTCGTAGAAGAGATAATGGTTCCTACTA-T-TT-ATATCTCTG 1476
|||||||||||||||| ||||||||||||||||||||||||||| | || |||| ||||
Sbjct 1432 TTTCGTTTTGATTTGAGCTCGTAGAAGAGATAATGGTTCCTACTACTATTTATATTTCTG 1491
Query 1477 TGAAGTGTAGAATCTTTTAATTTATCAAATACATTTTCTGAAACCTGAAGGAGAGTACTA 1536
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1492 TGAAGTGTAGAATCTTTTAATTTATCAAATACATTTTCTGAAACCCGAAGGAGAGAACTA 1551
Query 1537 CTACATTAATTGCTTCTTCTTTTTTG 1562
||||||| ||||||||||||||||||
Sbjct 1552 CTACATTTATTGCTTCTTCTTTTTTG 1577
> AT1G21870.1 | Symbols: GONST5 | golgi nucleotide sugar transporter
5 | chr1:7678208-7679697 FORWARD LENGTH=1026
Length=1026
Score = 1050 bits (568), Expect = 0.0
Identities = 857/993 (86%), Gaps = 33/993 (3%)
Strand=Plus/Plus
Query 288 TATGTTCAGATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAACGTTACCGTCATCAT 347
||||||||||||||| ||| |||||||||| ||||||||||| |||||||| || |||||
Sbjct 33 TATGTTCAGATCTCTGTTATCGATTCTTCAATGGTGGGGTTTTAACGTTACTGTTATCAT 92
Query 348 CATGAACAAATGGATCTTTCAGAAACTGGATTTCAAGTTTCCACTATCGGTTTCATGTGT 407
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 93 CATGAACAAATGGATCTTTCAGAAACTGGATTTCAAGTTTCCATTATCAGTTTCATGTGT 152
Query 408 TCACTTCATATGTTCATCGATTGGAGCTTACATCGTTATCAAAGTTCTCAA-GCTTAAAC 466
||| ||||||||||| ||||||||||| ||||| || || ||||| || || ||||||||
Sbjct 153 TCATTTCATATGTTCGTCGATTGGAGCATACATTGTGATTAAAGT-CTTAAAGCTTAAAC 211
Query 467 CATTGATTGTTGTTGA-CCAGAAGATCGGTGGAGGAGGATTTTTCCAATGTC-TTTCGTG 524
| |||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 212 CTTTGATTGTGGTTGATCCAGAAGATAGGTGGAGGAGGATTTTTCCAATGTCATTT-GTG 270
Query 525 TTTTGTATCAACATTGTGTTGGGAAATGTCAGTCTTCGATACATTCCTGTTTCGTTTATG 584
|| |||||||||||||||||||| ||| | |||||| ||||||||||||| || ||||||
Sbjct 271 TTCTGTATCAACATTGTGTTGGGGAATATTAGTCTTAGATACATTCCTGTCTCTTTTATG 330
Query 585 CAGACGATTAAATCTTTCACTCCAGCTACTACAGT-G-GCTA--GT-------ATGGAGG 633
||||| || |||||||| ||||| || || ||||| | | || || |||||||
Sbjct 331 CAGACTATCAAATCTTTAACTCCTGCAACAACAGTTGTGTTACAGTGGTTGGTATGGAGG 390
Query 634 AAATACTTTGACTGGCGTATTTGGGCGTC-TCTCGTGCCCATTGTTGGTGGAATTCTTCT 692
||||| ||||| ||||||||||||||||| | | ||||| |||||||| || ||||||||
Sbjct 391 AAATATTTTGATTGGCGTATTTGGGCGTCAT-TGGTGCCTATTGTTGGAGGGATTCTTCT 449
Query 693 GACCTCTGTTACCGAACTTAGTTTTAACATGTTTGGATTCTGTGCTGCCTTGTTTGGATG 752
|| ||| |||| |||||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 450 TACTTCTATTACAGAACTTAGCTTTAATGTGTTTGGATTCTGTGCTGCTTTGTTTGGATG 509
Query 753 TTTAGCTACTTCCACAAAGACCATTCTAGCCGAATCCCTTCTTCATGGTTACAAATTTGA 812
||||||||| || |||||||||||||| || ||||| ||||||||||| |||||||||||
Sbjct 510 TTTAGCTACCTCTACAAAGACCATTCTTGCAGAATCTCTTCTTCATGGATACAAATTTGA 569
Query 813 CAGCATAAACACTGTATACTATATGGCGCCTTTTGCCACCATGATCCTCGGGATACCAGC 872
|||||||||||| |||||||||||||||||||| || |||||||| |||||| |||| ||
Sbjct 570 CAGCATAAACACGGTATACTATATGGCGCCTTTCGCGACCATGATTCTCGGGTTACCTGC 629
Query 873 ACTATTACTGGAA-GGCAGTGGAATTTTG-AGTTGGTTTGAAGCACACCC-TGCTCCCTG 929
| | ||||| ||| || | |||||||||| | ||||||||||||||| || | |||| ||
Sbjct 630 ATTTTTACTAGAAAGGAA-TGGAATTTTGGA-TTGGTTTGAAGCACATCCAT-CTCCATG 686
Query 930 GTCAGCCCTCATCATTATATTCAGTTCTGGTGTTCTAGCCTTCTGTCTCAACTTCTCCAT 989
||| || ||||| ||| | |||| || ||||||||||| |||||||| |||||||||||
Sbjct 687 GTCGGCTCTCATAATTCTTTTCAACTCAGGTGTTCTAGCTTTCTGTCTTAACTTCTCCAT 746
Query 990 CTTCTACGTCATTCACTCCACAACCGCAGTCACATTCAACGTAGCTGGAAACCTTAAGGT 1049
|||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 747 CTTCTATGTCATTCAATCCACAACAGCAGTCACATTCAATGTAGCTGGAAACCTTAAGGT 806
Query 1050 TGCCGTAGCTGTATTGGTCTCATGGTTGATATTCCGTAACCCAATATCGTATATGAATGC 1109
||| |||||||| || || |||||| ||||||| || ||||| ||||| ||||||||
Sbjct 807 TGCAGTAGCTGTGTTTGTTTCATGGATGATATTTCGAAACCCGATATCACCGATGAATGC 866
Query 1110 TGTTGGATGCGGAATTACGCTTGTGGGCTGCACGTTTTATGGATATGTGAGGCATATGCT 1169
|||||| |||||||| || |||||||||||||| ||||| |||||||| || || |||||
Sbjct 867 TGTTGGCTGCGGAATCACACTTGTGGGCTGCACCTTTTACGGATATGTAAGACACATGCT 926
Query 1170 TTCACAGCAAACA-CCGGGAACTCCTAGGACACCTCGTACCCCAAG-AAGCAAGATGGAA 1227
||| |||||| || || |||||||||||||| |||||||||||||| || ||||||||||
Sbjct 927 TTCTCAGCAA-CAACCCGGAACTCCTAGGACTCCTCGTACCCCAAGGAA-CAAGATGGAA 984
Query 1228 TT-ACTTCCTCTTGTTAATAATGATAAACTCGA 1259
| | | |||||||||||| |||||||||||
Sbjct 985 CTGA-TCCCTCTTGTTAAT---GATAAACTCGA 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77108037120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5