BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg476928
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77640.1 | Symbols: | Integrase-type DNA-binding superfamil... 713 0.0
AT1G21910.1 | Symbols: DREB26 | Integrase-type DNA-binding supe... 283 2e-75
> AT1G77640.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr1:29178737-29179675 FORWARD LENGTH=939
Length=939
Score = 713 bits (386), Expect = 0.0
Identities = 428/448 (96%), Gaps = 3/448 (1%)
Strand=Plus/Plus
Query 1 CCCAACACTTGTTCAAGCATATCCAAGTCAATAACAACATCACCACATAACATGGTGAAA 60
||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 9 CCCAACACTTGTTCAAGCATATCTAAGTCAATAACAACATTACAACATAACATGGTGAAA 68
Query 61 CAAGAACTCAAGATCCAAGTTACTActtcctcatcatcactctctcattcttcatcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 CAAGAACTCAAGATCCAAGTTACTACTTCCTCATCATCACTCTCTCATTCTTCATCTTCT 128
Query 121 tcttcttcG--A-CGTCGGGGCTACTTCATCAATCTTGTAAGAACAAGATAAAGAAGTAC 177
|||||||| | |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 129 TCTTCTTCTTCAACGTCGGCACTACGTCATCAATCTTGTAAGAACAAGATAAAGAAGTAT 188
Query 178 AAAGGAGTGAGGATGAGAAGTTGGGGATCATGGGTTACTGAAATTAGGGCACCAAACCAA 237
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 189 AAAGGTGTGAGGATGCGAAGTTGGGGATCATGGGTTACTGAAATTAGGGCACCAAATCAA 248
Query 238 AAGACAAGAATCTGGTTAGGTTCTTACTCTACCGCAGAAGCAGCTGCTAGGGCTTACGAT 297
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 249 AAGACAAGAATCTGGTTAGGTTCTTACTCCACCGCAGAAGCAGCTGCTAGGGCTTACGAC 308
Query 298 GCTGCTCTCTTGTGTCTCAAGGGACCTAAAGCTAATCTCAACTTCCCTAACATCACCACT 357
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GCTGCTCTCTTGTGTCTTAAGGGACCTAAAGCTAATCTCAACTTCCCTAACATCACCACT 368
Query 358 ACTTCTCCTTTTCTTATGAACATCGATGAAAAGACCCTTTTGTCCCCCAAATCCATCCAA 417
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 369 ACTTCTCCTTTTCTTATGAACATCGACGAAAAGACCCTTTTGTCCCCAAAATCAATCCAA 428
Query 418 AAGGTCGCCGCTCAAGCCGCTAACTCCT 445
||||||||||||||||||||||||||||
Sbjct 429 AAGGTCGCCGCTCAAGCCGCTAACTCCT 456
Score = 562 bits (304), Expect = 2e-159
Identities = 399/442 (90%), Gaps = 17/442 (4%)
Strand=Plus/Plus
Query 446 ATGTTCATGATGACGGACTCCATCGCCATCCATCTCCTTCTTCTTCAACTGCATCTTCTC 505
||| |||||||||||||||| ||| |||||||||| ||||||||||| |||||||||| |
Sbjct 496 ATGATCATGATGACGGACTCGATCACCATCCATCTGCTTCTTCTTCAGCTGCATCTTCAC 555
Query 506 CACCAGATGATGATCATCATAATGATGATGATGGTGATTTGGTATCGTTGATGGAATCTT 565
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 556 CACCAGATGATGATCATCATAATGATGACGATGGTGATTTGGTATCGTTGATGGAATCTT 615
Query 566 TCGTGGACTACAAGGAACACGTGTCTCTGATGGATCCATCA-TGGTATGAATTTGAACAT 624
||||||| ||||| |||||||||||||||||||||||||| || |||||||||| ||||
Sbjct 616 TCGTGGATTACAACGAACACGTGTCTCTGATGGATCCATCGCTG-TATGAATTTGGACAT 674
Query 625 AATGAGATGTTATTCACCAACGGAGCTCCGTTTGATTATTCTCCACAGTTAAATAGCTC- 683
|||||||| || ||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 675 AATGAGATCTTCTTCACCAACGGAGATCCGTTTGATTATTCTCCACAGTTACATAGCTCA 734
Query 684 GA--------TGGATGACTTCTACGACGATGTTGATATTCGGCTATGGAGTTTTAGTTGA 735
|| |||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct 735 GAGGCAACGATGGATGACTTCTACGACGATGTTGATATTCCGCTATGGAGTTTCAGTTAA 794
Query 736 TCCAACGGTCAATATTATTATACTACGAAACACTTTCAATTCACATTATTTCATTTAATT 795
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 795 TCCAACGGTCCATATTATTATACTACGAAACACTTTTAATTCACATTATTTCATTTAATT 854
Query 796 TATTCTTTTAAACTTATCGATTATCATTCGACGTTGTTGTTTCTTTATGTATGAAATATA 855
|||||||| || || | || || ||||| | |||||||||| |||||||| |||||||
Sbjct 855 TATTCTTTCAA--TT--C-AT-ATTATTCGTCCTTGTTGTTTCGTTATGTATTAAATATA 908
Query 856 CACACACTAATTTAAGAAGATC 877
||||||||||||||||||||||
Sbjct 909 CACACACTAATTTAAGAAGATC 930
> AT1G21910.1 | Symbols: DREB26 | Integrase-type DNA-binding superfamily
protein | chr1:7696536-7697699 FORWARD LENGTH=1164
Length=1164
Score = 283 bits (153), Expect = 2e-75
Identities = 248/291 (85%), Gaps = 17/291 (6%)
Strand=Plus/Plus
Query 163 AAGATAAAGAAGTACAAAGGAGTGAGGATGAGAAGTTGGGGATCATGGGT-TACTGAAAT 221
||||| |||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 255 AAGATTAAGAAGTACAAAGGAGTGAGGATGAGAAGTTGGGGATCATGGGTCT-CTGAGAT 313
Query 222 TAGGGCACCAAACCAAAAGACAAGAATCTGGTTAGGTTCTTACTCTACCGCAGAAGCAGC 281
|||||||||||| ||||||||||| || ||||||||||||||||| || || ||||||||
Sbjct 314 TAGGGCACCAAATCAAAAGACAAGGATTTGGTTAGGTTCTTACTCAACAGCTGAAGCAGC 373
Query 282 TGCTAGGGCTTACGATGCTGCTCTCTTGTGTCTCAAGGGACCTAAAGCTAATCTCAACTT 341
|||||| |||||||||| ||| ||||| |||||||| || ||| |||| |||||||||||
Sbjct 374 TGCTAGAGCTTACGATGTTGCACTCTTATGTCTCAAAGGCCCTCAAGCCAATCTCAACTT 433
Query 342 CCCTAACATCACCACTACTTCTCCT--T-TTCTT-ATGAA-CATC---GATGAAAAGACC 393
||||| | || | | |||||| | | ||||| || || | || |||||||| |||
Sbjct 434 CCCTA-CTTCTTCT-T-CTTCTCATCATCTTCTTGAT-AATC-TCTTAGATGAAAATACC 488
Query 394 CTTTTGTCCCCCAAATCCATCCAAA-AGGTCGCCGCTCAAGCCGCTAACTC 443
||||||||||||||||||||||||| || | || |||||||| || |||||
Sbjct 489 CTTTTGTCCCCCAAATCCATCCAAAGAG-TAGCTGCTCAAGCTGCCAACTC 538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42799493244
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5